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Aliases for OR4F5 Gene

Aliases for OR4F5 Gene

  • Olfactory Receptor, Family 4, Subfamily F, Member 5 2 3

External Ids for OR4F5 Gene

Summaries for OR4F5 Gene

Entrez Gene Summary for OR4F5 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4F5 Gene

OR4F5 (Olfactory Receptor, Family 4, Subfamily F, Member 5) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR4F4.

UniProtKB/Swiss-Prot for OR4F5 Gene

  • Odorant receptor.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR4F5 Gene

Genomics for OR4F5 Gene

Genomic Location for OR4F5 Gene

Start:
69,091 bp from pter
End:
70,008 bp from pter
Size:
918 bases
Orientation:
Plus strand

Genomic View for OR4F5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR4F5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR4F5 Gene

Regulatory Elements for OR4F5 Gene

Proteins for OR4F5 Gene

  • Protein details for OR4F5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NH21-OR4F5_HUMAN
    Recommended name:
    Olfactory receptor 4F5
    Protein Accession:
    Q8NH21
    Secondary Accessions:
    • Q5VT22

    Protein attributes for OR4F5 Gene

    Size:
    305 amino acids
    Molecular mass:
    34330 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR4F5 Gene

Proteomics data for OR4F5 Gene at MOPED

Post-translational modifications for OR4F5 Gene

No Post-translational modifications

Other Protein References for OR4F5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for OR4F5 Gene

Domains for OR4F5 Gene

Gene Families for OR4F5 Gene

HGNC:
  • OR4 :GPCR / Class A : Olfactory receptors

Protein Domains for OR4F5 Gene

UniProtKB/Swiss-Prot:

OR4F5_HUMAN
Family:
  • Belongs to the G-protein coupled receptor 1 family.:
    • Q8NH21
genes like me logo Genes that share domains with OR4F5: view

Function for OR4F5 Gene

Molecular function for OR4F5 Gene

UniProtKB/Swiss-Prot Function: Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4F5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR4F5: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OR4F5 Gene

Localization for OR4F5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4F5 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR4F5 Gene COMPARTMENTS Subcellular localization image for OR4F5 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR4F5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR4F5: view

Pathways for OR4F5 Gene

genes like me logo Genes that share pathways with OR4F5: view

Pathways by source for OR4F5 Gene

Interacting Proteins for OR4F5 Gene

Gene Ontology (GO) - Biological Process for OR4F5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0050907 detection of chemical stimulus involved in sensory perception IBA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR4F5: view

Transcripts for OR4F5 Gene

mRNA/cDNA for OR4F5 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR4F5 Gene

No ASD Table

Relevant External Links for OR4F5 Gene

GeneLoc Exon Structure for
OR4F5
ECgene alternative splicing isoforms for
OR4F5

Expression for OR4F5 Gene

mRNA expression in normal human tissues for OR4F5 Gene

SOURCE GeneReport for Unigene cluster for OR4F5 Gene Hs.554500

genes like me logo Genes that share expressions with OR4F5: view

Orthologs for OR4F5 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR4F5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 81 (a)
OneToMany
LOC100608733 36
  • 99.13 (n)
  • 98.03 (a)
cow
(Bos Taurus)
Mammalia -- 37
  • 77 (a)
OneToMany
LOC785647 36
  • 88.01 (n)
  • 84.82 (a)
mouse
(Mus musculus)
Mammalia Olfr1289 37
  • 81 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 55 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 57 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Olr765 36
  • 83.28 (n)
  • 82.51 (a)
Species with no ortholog for OR4F5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR4F5 Gene

ENSEMBL:
Gene Tree for OR4F5 (if available)
TreeFam:
Gene Tree for OR4F5 (if available)

Paralogs for OR4F5 Gene

Selected SIMAP similar genes for OR4F5 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for OR4F5 Gene

genes like me logo Genes that share paralogs with OR4F5: view

Variants for OR4F5 Gene

Sequence variations from dbSNP and Humsavar for OR4F5 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2531266 -- 69,552(+) TTGGC(C/G)TTTGC synonymous-codon, reference
rs2531267 -- 69,569(+) CTTAC(C/T)CTTCT missense, reference
rs2854682 -- 69,453(-) AGGGG(C/T)TTGCA synonymous-codon, reference
rs2907081 -- 68,316(+) ACCTA(C/T)TGTTA upstream-variant-2KB
rs3020702 -- 68,306(-) TAATA(A/G)CTGCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR4F5 Gene

Variant ID Type Subtype PubMed ID
nsv7879 CNV Gain+Loss 18304495
dgv2n71 CNV Gain 21882294
dgv1e1 CNV Complex 17122850
nsv428112 CNV Gain 18775914
dgv3e1 CNV Complex 17122850
esv27265 CNV Gain+Loss 19812545
nsv469759 CNV Loss 16826518
nsv471591 CNV Loss 15918152
nsv437198 CNV Loss 16327808
nsv437859 CNV Loss 16468122
nsv514929 CNV Complex 21397061

Relevant External Links for OR4F5 Gene

HapMap Linkage Disequilibrium report
OR4F5
Human Gene Mutation Database (HGMD)
OR4F5

Disorders for OR4F5 Gene

No disorders were found for OR4F5 Gene.

No data available for UniProtKB/Swiss-Prot for OR4F5 Gene

Publications for OR4F5 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4

Products for OR4F5 Gene

Sources for OR4F5 Gene

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