Free for academic non-profit institutions. Other users need a Commercial license

Aliases for OR4F21 Gene

Aliases for OR4F21 Gene

  • Olfactory Receptor Family 4 Subfamily F Member 21 2 3 5
  • OR4F21P 3 4
  • Olfactory Receptor, Family 4, Subfamily F, Member 21 Pseudogene 3
  • Olfactory Receptor, Family 4, Subfamily F, Member 21 2
  • Olfactory Receptor 4F21 3

External Ids for OR4F21 Gene

Previous HGNC Symbols for OR4F21 Gene

  • OR4F21P

Previous GeneCards Identifiers for OR4F21 Gene

  • GC08M000107
  • GC08M000018

Summaries for OR4F21 Gene

Entrez Gene Summary for OR4F21 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4F21 Gene

OR4F21 (Olfactory Receptor Family 4 Subfamily F Member 21) is a Protein Coding gene. Among its related pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and transmembrane signaling receptor activity. An important paralog of this gene is OR4F16.

UniProtKB/Swiss-Prot for OR4F21 Gene

  • Odorant receptor.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR4F21 Gene

Genomics for OR4F21 Gene

Regulatory Elements for OR4F21 Gene


Genomic Location for OR4F21 Gene

Chromosome:
8
Start:
166,049 bp from pter
End:
167,043 bp from pter
Size:
995 bases
Orientation:
Minus strand

Genomic View for OR4F21 Gene

Genes around OR4F21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR4F21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR4F21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR4F21 Gene

Proteins for OR4F21 Gene

  • Protein details for OR4F21 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95013-O4F21_HUMAN
    Recommended name:
    Olfactory receptor 4F21
    Protein Accession:
    O95013
    Secondary Accessions:
    • A6NIU1

    Protein attributes for OR4F21 Gene

    Size:
    312 amino acids
    Molecular mass:
    35094 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR4F21 Gene

Post-translational modifications for OR4F21 Gene

  • Glycosylation at Asn5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR4F21 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR4F21 Gene

Domains & Families for OR4F21 Gene

Gene Families for OR4F21 Gene

Protein Domains for OR4F21 Gene

Suggested Antigen Peptide Sequences for OR4F21 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95013

UniProtKB/Swiss-Prot:

O4F21_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR4F21: view

Function for OR4F21 Gene

Molecular function for OR4F21 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4F21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR4F21: view
genes like me logo Genes that share phenotypes with OR4F21: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR4F21 Gene

Localization for OR4F21 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4F21 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR4F21 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR4F21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR4F21: view

Pathways & Interactions for OR4F21 Gene

genes like me logo Genes that share pathways with OR4F21: view

Pathways by source for OR4F21 Gene

Interacting Proteins for OR4F21 Gene

Gene Ontology (GO) - Biological Process for OR4F21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050907 detection of chemical stimulus involved in sensory perception IBA --
genes like me logo Genes that share ontologies with OR4F21: view

No data available for SIGNOR curated interactions for OR4F21 Gene

Transcripts for OR4F21 Gene

mRNA/cDNA for OR4F21 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR4F21 Gene

No ASD Table

Relevant External Links for OR4F21 Gene

GeneLoc Exon Structure for
OR4F21
ECgene alternative splicing isoforms for
OR4F21

Expression for OR4F21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR4F21 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR4F21 Gene:

OR4F21

SOURCE GeneReport for Unigene cluster for OR4F21 Gene:

Hs.690459
genes like me logo Genes that share expression patterns with OR4F21: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR4F21 Gene

Orthologs for OR4F21 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR4F21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC744286 34
  • 99.25 (n)
-- 35
  • 97 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 91 (a)
OneToMany
cOR4F25 34
  • 77.99 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 90 (a)
ManyToMany
-- 35
  • 88 (a)
ManyToMany
-- 35
  • 88 (a)
ManyToMany
LOC788764 34
  • 77.06 (n)
rat
(Rattus norvegicus)
Mammalia Olr774 34
  • 82.37 (n)
mouse
(Mus musculus)
Mammalia Olfr1303 34 35
  • 82.05 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 74 (a)
OneToMany
Species where no ortholog for OR4F21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR4F21 Gene

ENSEMBL:
Gene Tree for OR4F21 (if available)
TreeFam:
Gene Tree for OR4F21 (if available)

Paralogs for OR4F21 Gene

(439) SIMAP similar genes for OR4F21 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR4F21: view

Variants for OR4F21 Gene

Sequence variations from dbSNP and Humsavar for OR4F21 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1008794619 -- 167,616(+) GAAAT(A/G)GAATC intron-variant, upstream-variant-2KB
rs1010748579 -- 166,619(+) GCTCA(C/T)AATGG intron-variant, reference, missense
rs1014497226 -- 166,466(+) GGCTA(C/G)TCTGA intron-variant, reference, missense
rs1018875181 -- 167,626(+) CACCA(C/G)CATTA intron-variant, upstream-variant-2KB
rs1027771873 -- 167,713(+) AAATG(C/G)CTTCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR4F21 Gene

Variant ID Type Subtype PubMed ID
dgv6788n100 CNV gain 25217958
dgv6789n100 CNV gain 25217958
dgv6790n100 CNV gain 25217958
dgv6791n100 CNV gain 25217958
esv26079 CNV gain+loss 19812545
esv2759581 CNV gain+loss 17122850
esv2761228 CNV gain+loss 21179565
nsv1030422 CNV gain 25217958
nsv1030576 CNV gain 25217958
nsv1031378 CNV loss 25217958
nsv1076028 CNV deletion 25765185
nsv1119154 CNV deletion 24896259
nsv428193 CNV gain+loss 18775914
nsv471521 CNV gain 19718026
nsv515053 CNV gain 21397061
nsv820991 CNV deletion 20802225
nsv8253 CNV gain+loss 18304495
nsv831205 CNV loss 17160897
nsv967513 OTHER complex 23825009

Variation tolerance for OR4F21 Gene

Gene Damage Index Score: 0.70; 14.86% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR4F21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR4F21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR4F21 Gene

Disorders for OR4F21 Gene

Relevant External Links for OR4F21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR4F21

No disorders were found for OR4F21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR4F21 Gene

Publications for OR4F21 Gene

  1. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4 64

Products for OR4F21 Gene

Sources for OR4F21 Gene

Content
Loading form....