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Aliases for OR4D9 Gene

Aliases for OR4D9 Gene

  • Olfactory Receptor Family 4 Subfamily D Member 9 2 3 5
  • Olfactory Receptor, Family 4, Subfamily D, Member 9 Pseudogene 2 3
  • Olfactory Receptor OR11-253 3 4
  • Olfactory Receptor, Family 4, Subfamily D, Member 9 2
  • OR11-253 3

External Ids for OR4D9 Gene

Previous GeneCards Identifiers for OR4D9 Gene

  • GC11U990535
  • GC11P059058
  • GC11P059038
  • GC11P059282

Summaries for OR4D9 Gene

Entrez Gene Summary for OR4D9 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4D9 Gene

OR4D9 (Olfactory Receptor Family 4 Subfamily D Member 9) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and transmembrane signaling receptor activity. An important paralog of this gene is OR4Q3.

UniProtKB/Swiss-Prot for OR4D9 Gene

  • Odorant receptor.

Gene Wiki entry for OR4D9 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR4D9 Gene

Genomics for OR4D9 Gene

Regulatory Elements for OR4D9 Gene

Enhancers for OR4D9 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around OR4D9 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR4D9 Gene

59,514,913 bp from pter
59,515,857 bp from pter
945 bases
Plus strand

Genomic View for OR4D9 Gene

Genes around OR4D9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR4D9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR4D9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR4D9 Gene

Proteins for OR4D9 Gene

  • Protein details for OR4D9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Olfactory receptor 4D9
    Protein Accession:
    Secondary Accessions:
    • Q6IFF3

    Protein attributes for OR4D9 Gene

    314 amino acids
    Molecular mass:
    35666 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR4D9 Gene

Proteomics data for OR4D9 Gene at MOPED

Post-translational modifications for OR4D9 Gene

  • Glycosylation at Asn 5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR4D9 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR4D9 Gene

Domains & Families for OR4D9 Gene

Gene Families for OR4D9 Gene

Protein Domains for OR4D9 Gene

Suggested Antigen Peptide Sequences for OR4D9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the G-protein coupled receptor 1 family.
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR4D9: view

Function for OR4D9 Gene

Molecular function for OR4D9 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4D9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
genes like me logo Genes that share ontologies with OR4D9: view
genes like me logo Genes that share phenotypes with OR4D9: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR4D9 Gene

Localization for OR4D9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4D9 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for OR4D9 Gene COMPARTMENTS Subcellular localization image for OR4D9 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR4D9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA,IBA --
genes like me logo Genes that share ontologies with OR4D9: view

Pathways & Interactions for OR4D9 Gene

genes like me logo Genes that share pathways with OR4D9: view

Pathways by source for OR4D9 Gene

Interacting Proteins for OR4D9 Gene

Gene Ontology (GO) - Biological Process for OR4D9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR4D9: view

No data available for SIGNOR curated interactions for OR4D9 Gene

Drugs & Compounds for OR4D9 Gene

No Compound Related Data Available

Transcripts for OR4D9 Gene

mRNA/cDNA for OR4D9 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR4D9 Gene

No ASD Table

Relevant External Links for OR4D9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for OR4D9 Gene

mRNA expression in normal human tissues for OR4D9 Gene

SOURCE GeneReport for Unigene cluster for OR4D9 Gene Hs.553757

genes like me logo Genes that share expression patterns with OR4D9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for OR4D9 Gene

Orthologs for OR4D9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR4D9 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia OR4D9 35
  • 84.57 (n)
  • 87.46 (a)
OR4D9 36
  • 87 (a)
(Canis familiaris)
Mammalia OR4D9 35
  • 87.57 (n)
  • 89.07 (a)
OR4D9 36
  • 89 (a)
(Mus musculus)
Mammalia Olfr1425 35
  • 79.33 (n)
  • 81.17 (a)
Olfr1425 16
Olfr1427 36
  • 77 (a)
(Pan troglodytes)
Mammalia LOC466616 35
  • 98.73 (n)
  • 97.77 (a)
OR4D9 36
  • 98 (a)
(Rattus norvegicus)
Mammalia Olr322 35
  • 80.41 (n)
  • 82.47 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 78 (a)
-- 36
  • 77 (a)
-- 36
  • 78 (a)
-- 36
  • 76 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 66 (a)
-- 36
  • 66 (a)
-- 36
  • 65 (a)
-- 36
  • 50 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 50 (a)
-- 36
  • 57 (a)
Species with no ortholog for OR4D9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR4D9 Gene

Gene Tree for OR4D9 (if available)
Gene Tree for OR4D9 (if available)

Paralogs for OR4D9 Gene

(441) SIMAP similar genes for OR4D9 Gene using alignment to 1 proteins: Pseudogenes for OR4D9 Gene

genes like me logo Genes that share paralogs with OR4D9: view

Variants for OR4D9 Gene

Sequence variations from dbSNP and Humsavar for OR4D9 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs17501584 - 59,515,388(+) AGCGC(A/C/G)GATTT reference, missense
rs112106578 -- 59,513,098(+) TGAGA(C/T)GGAGT upstream-variant-2KB
rs112457480 -- 59,513,136(+) GTGGC(A/G)TGATC upstream-variant-2KB
rs112518743 -- 59,515,624(+) CCATC(C/T)CCACC reference, missense
rs143233893 -- 59,515,965(+) CCATC(A/G)AGTCC downstream-variant-500B

Variation tolerance for OR4D9 Gene

Residual Variation Intolerance Score: 91.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.73; 66.37% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for OR4D9 Gene

Disorders for OR4D9 Gene

Relevant External Links for OR4D9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for OR4D9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR4D9 Gene

Publications for OR4D9 Gene

  1. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 3 4 67
  2. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3

Products for OR4D9 Gene

Sources for OR4D9 Gene