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Aliases for OR4D2 Gene

Aliases for OR4D2 Gene

  • Olfactory Receptor Family 4 Subfamily D Member 2 2 3 5
  • Olfactory Receptor, Family 4, Subfamily D, Member 2 2 3
  • B-Lymphocyte Membrane Protein BC2009 3 4
  • Olfactory Receptor OR17-24 3 4
  • G-Protein Coupled Membrane Protein 3
  • OR17-24 3
  • BC2009 3

External Ids for OR4D2 Gene

Previous GeneCards Identifiers for OR4D2 Gene

  • GC17U990167
  • GC17P056722
  • GC17P053601
  • GC17P056246
  • GC17P056248
  • GC17P056253

Summaries for OR4D2 Gene

Entrez Gene Summary for OR4D2 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4D2 Gene

OR4D2 (Olfactory Receptor Family 4 Subfamily D Member 2) is a Protein Coding gene. Among its related pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR4Q3.

UniProtKB/Swiss-Prot for OR4D2 Gene

  • Odorant receptor.

Gene Wiki entry for OR4D2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR4D2 Gene

Genomics for OR4D2 Gene

Regulatory Elements for OR4D2 Gene

Enhancers for OR4D2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around OR4D2 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR4D2 Gene

Chromosome:
17
Start:
58,169,656 bp from pter
End:
58,170,579 bp from pter
Size:
924 bases
Orientation:
Plus strand

Genomic View for OR4D2 Gene

Genes around OR4D2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR4D2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR4D2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR4D2 Gene

Proteins for OR4D2 Gene

  • Protein details for OR4D2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P58180-OR4D2_HUMAN
    Recommended name:
    Olfactory receptor 4D2
    Protein Accession:
    P58180
    Secondary Accessions:
    • Q6IFN8
    • Q96R75

    Protein attributes for OR4D2 Gene

    Size:
    307 amino acids
    Molecular mass:
    34958 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR4D2 Gene

Proteomics data for OR4D2 Gene at MOPED

Post-translational modifications for OR4D2 Gene

  • Glycosylation at Asn 5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR4D2 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR4D2 Gene

Domains & Families for OR4D2 Gene

Gene Families for OR4D2 Gene

Protein Domains for OR4D2 Gene

Suggested Antigen Peptide Sequences for OR4D2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P58180

UniProtKB/Swiss-Prot:

OR4D2_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR4D2: view

Function for OR4D2 Gene

Molecular function for OR4D2 Gene

GENATLAS Biochemistry:
olfactory receptor,family 4,subfamily D,member 2,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4D2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
genes like me logo Genes that share ontologies with OR4D2: view

Phenotypes for OR4D2 Gene

genes like me logo Genes that share phenotypes with OR4D2: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR4D2 Gene

Localization for OR4D2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4D2 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR4D2 Gene COMPARTMENTS Subcellular localization image for OR4D2 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR4D2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA,IBA --
genes like me logo Genes that share ontologies with OR4D2: view

Pathways & Interactions for OR4D2 Gene

genes like me logo Genes that share pathways with OR4D2: view

Pathways by source for OR4D2 Gene

Interacting Proteins for OR4D2 Gene

Gene Ontology (GO) - Biological Process for OR4D2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR4D2: view

No data available for SIGNOR curated interactions for OR4D2 Gene

Drugs & Compounds for OR4D2 Gene

(3) Drugs for OR4D2 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(4) Additional Compounds for OR4D2 Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with OR4D2: view

Transcripts for OR4D2 Gene

mRNA/cDNA for OR4D2 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR4D2 Gene

No ASD Table

Relevant External Links for OR4D2 Gene

GeneLoc Exon Structure for
OR4D2
ECgene alternative splicing isoforms for
OR4D2

Expression for OR4D2 Gene

mRNA expression in normal human tissues for OR4D2 Gene

Protein differential expression in normal tissues from HIPED for OR4D2 Gene

This gene is overexpressed in Platelet (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for OR4D2 Gene



SOURCE GeneReport for Unigene cluster for OR4D2 Gene Hs.446879

genes like me logo Genes that share expression patterns with OR4D2: view

Protein tissue co-expression partners for OR4D2 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for OR4D2 Gene

Orthologs for OR4D2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR4D2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia LOC788704 35
  • 87.08 (n)
  • 84.04 (a)
-- 36
  • 80 (a)
OneToMany
-- 36
  • 82 (a)
OneToMany
-- 36
  • 83 (a)
OneToMany
-- 36
  • 82 (a)
OneToMany
dog
(Canis familiaris)
Mammalia LOC491108 35
  • 87.47 (n)
  • 87.25 (a)
-- 36
  • 66 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Olfr463 35
  • 84.65 (n)
  • 84.21 (a)
Olfr463 16
Olfr462 36
  • 83 (a)
OneToMany
Olfr463 36
  • 82 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Olr1521 35
  • 84.21 (n)
  • 83.88 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 78 (a)
ManyToMany
-- 36
  • 75 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 64 (a)
ManyToMany
-- 36
  • 67 (a)
ManyToMany
-- 36
  • 65 (a)
ManyToMany
-- 36
  • 68 (a)
ManyToMany
-- 36
  • 66 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 51 (a)
ManyToMany
-- 36
  • 55 (a)
ManyToMany
Species with no ortholog for OR4D2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR4D2 Gene

ENSEMBL:
Gene Tree for OR4D2 (if available)
TreeFam:
Gene Tree for OR4D2 (if available)

Paralogs for OR4D2 Gene

(437) SIMAP similar genes for OR4D2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR4D2: view

Variants for OR4D2 Gene

Sequence variations from dbSNP and Humsavar for OR4D2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs60994383 - 58,169,740(+) TGTTT(A/C)TAATG reference, missense
rs5821217 -- 58,169,015(+) ATAGG(-/C)TTTGG upstream-variant-2KB
rs4603619 -- 58,167,832(+) CACAG(C/T)GAAAC upstream-variant-2KB
rs9901415 -- 58,168,765(+) TCTCC(C/T)TCCCT upstream-variant-2KB
rs9901524 -- 58,168,956(+) AAGTT(A/G)ACTGT upstream-variant-2KB

Variation tolerance for OR4D2 Gene

Residual Variation Intolerance Score: 87.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.79; 86.79% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR4D2 Gene

HapMap Linkage Disequilibrium report
OR4D2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OR4D2 Gene

Disorders for OR4D2 Gene

Relevant External Links for OR4D2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR4D2

No disorders were found for OR4D2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR4D2 Gene

Publications for OR4D2 Gene

  1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 3 4 67
  2. Structural basis of GDP release and gating in G protein coupled Fe2+ transport. (PMID: 19629046) Guilfoyle A. … Jormakka M. (EMBO J. 2009) 23
  3. Neurosteroids as endogenous inhibitors of neuronal cell apoptosis in aging. (PMID: 17192562) Charalampopoulos I. … Gravanis A. (Ann. N. Y. Acad. Sci. 2006) 23
  4. Functional role of lipid rafts in CD20 activity? (PMID: 15649140) Janas E. … Malhotra R. (Biochem. Soc. Symp. 2005) 23
  5. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3

Products for OR4D2 Gene

Sources for OR4D2 Gene

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