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Aliases for OR4D1 Gene

Aliases for OR4D1 Gene

  • Olfactory Receptor Family 4 Subfamily D Member 1 2 3 5
  • Olfactory Receptor TPCR16 3 4
  • Olfactory Receptor 4D3 3 4
  • OR4D3 3 4
  • Olfactory Receptor, Family 4, Subfamily D, Member 4 Pseudogene 3
  • Olfactory Receptor, Family 4, Subfamily D, Member 1 2
  • Olfactory Receptor, Family 4, Subfamily D, Member 3 3
  • Olfactory Receptor OR17-23 Pseudogene 3
  • Seven Transmembrane Helix Receptor 3
  • Olfactory Receptor 4D1 3
  • OR17-23 3
  • OR4D4P 3
  • TPCR16 3

External Ids for OR4D1 Gene

Previous HGNC Symbols for OR4D1 Gene

  • OR4D3

Previous GeneCards Identifiers for OR4D1 Gene

  • GC17P055976
  • GC17M058713
  • GC17P056539
  • GC17P056707
  • GC17P053552
  • GC17P053588
  • GC17P056232

Summaries for OR4D1 Gene

Entrez Gene Summary for OR4D1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4D1 Gene

OR4D1 (Olfactory Receptor Family 4 Subfamily D Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR4D2.

UniProtKB/Swiss-Prot for OR4D1 Gene

  • Odorant receptor.

Gene Wiki entry for OR4D1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR4D1 Gene

Genomics for OR4D1 Gene

Regulatory Elements for OR4D1 Gene

Enhancers for OR4D1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F058081 0.5 FANTOM5 ENCODE 16.3 -71.5 -71481 4.2 ATF1 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ZNF143 OR4D1 ENSG00000264914 SETP3 LOC101927557 CCDC182 IGBP1P2 LOC101927666 DYNLL2 VEZF1 MTMR4
GH17F058005 1.2 ENCODE 16.2 -148.6 -148629 4.1 CREB3L1 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 SRSF1 VEZF1 ENSG00000264914 OR4D1 LOC101927557 SETP3 CCDC182 IGBP1P2 TEX14 ENSG00000266086
GH17F057983 0.8 FANTOM5 ENCODE 16.2 -167.5 -167521 7.4 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF416 ZNF207 ENSG00000264914 OR4D1 LOC101927557 SETP3 CCDC182 IGBP1P2 LOC101927666 VEZF1 LOC101929185 GC17P057973
GH17F058351 0.2 ENCODE 16.2 +198.1 198057 3.9 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 TSPOAP1 SUPT4H1 SETP3 OR4D1 ENSG00000264914 LOC101927557 SPDYE22P RAD51C CCDC182 RNF43
GH17F057602 1.5 FANTOM5 Ensembl ENCODE 16.2 -548.8 -548780 7.5 ATF1 MLX ARID4B FEZF1 DMAP1 ZNF48 ZNF143 MXD4 MIER2 REST CCDC182 LOC101927557 ENSG00000264914 OR4D1 LOC100419768 SETP3 DGKE SRSF1 MSI2 LOC101927539
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around OR4D1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR4D1 Gene

Chromosome:
17
Start:
58,155,133 bp from pter
End:
58,156,156 bp from pter
Size:
1,024 bases
Orientation:
Plus strand

Genomic View for OR4D1 Gene

Genes around OR4D1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR4D1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR4D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR4D1 Gene

Proteins for OR4D1 Gene

  • Protein details for OR4D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15615-OR4D1_HUMAN
    Recommended name:
    Olfactory receptor 4D1
    Protein Accession:
    Q15615
    Secondary Accessions:
    • B2RN14
    • Q8NGB1
    • Q96R76

    Protein attributes for OR4D1 Gene

    Size:
    310 amino acids
    Molecular mass:
    35240 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR4D1 Gene

Post-translational modifications for OR4D1 Gene

  • Glycosylation at Asn 5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR4D1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR4D1 Gene

Domains & Families for OR4D1 Gene

Gene Families for OR4D1 Gene

Protein Domains for OR4D1 Gene

Suggested Antigen Peptide Sequences for OR4D1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q15615

UniProtKB/Swiss-Prot:

OR4D1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR4D1: view

Function for OR4D1 Gene

Molecular function for OR4D1 Gene

GENATLAS Biochemistry:
olfactory receptor,family 4,subfamily D,member 1,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity NAS 9119360
genes like me logo Genes that share ontologies with OR4D1: view
genes like me logo Genes that share phenotypes with OR4D1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR4D1 Gene

Localization for OR4D1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4D1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR4D1 Gene COMPARTMENTS Subcellular localization image for OR4D1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR4D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane NAS 9119360
genes like me logo Genes that share ontologies with OR4D1: view

Pathways & Interactions for OR4D1 Gene

genes like me logo Genes that share pathways with OR4D1: view

Pathways by source for OR4D1 Gene

Gene Ontology (GO) - Biological Process for OR4D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell NAS 9119360
GO:0050896 response to stimulus IEA --
GO:0050907 detection of chemical stimulus involved in sensory perception IBA --
genes like me logo Genes that share ontologies with OR4D1: view

No data available for SIGNOR curated interactions for OR4D1 Gene

Transcripts for OR4D1 Gene

mRNA/cDNA for OR4D1 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR4D1 Gene

No ASD Table

Relevant External Links for OR4D1 Gene

GeneLoc Exon Structure for
OR4D1
ECgene alternative splicing isoforms for
OR4D1

Expression for OR4D1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR4D1 Gene

Protein differential expression in normal tissues from HIPED for OR4D1 Gene

This gene is overexpressed in Liver (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for OR4D1 Gene



Protein tissue co-expression partners for OR4D1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR4D1 Gene:

OR4D1

SOURCE GeneReport for Unigene cluster for OR4D1 Gene:

Hs.531188
genes like me logo Genes that share expression patterns with OR4D1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for OR4D1 Gene

Orthologs for OR4D1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR4D1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OR4D1 35
  • 100 (a)
OneToOne
LOC468418 34
  • 99.46 (n)
dog
(Canis familiaris)
Mammalia OR4D1 34 35
  • 87.31 (n)
cow
(Bos Taurus)
Mammalia LOC788693 34
  • 86.77 (n)
-- 35
  • 85 (a)
OneToMany
-- 35
  • 83 (a)
OneToMany
-- 35
  • 83 (a)
OneToMany
-- 35
  • 79 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Or4d1 55 Olfr464 34 16 35
  • 84.3 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 81 (a)
ManyToMany
-- 35
  • 76 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 70 (a)
ManyToMany
-- 35
  • 69 (a)
ManyToMany
-- 35
  • 68 (a)
ManyToMany
-- 35
  • 68 (a)
ManyToMany
-- 35
  • 65 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 56 (a)
ManyToMany
-- 35
  • 53 (a)
ManyToMany
Species where no ortholog for OR4D1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR4D1 Gene

ENSEMBL:
Gene Tree for OR4D1 (if available)
TreeFam:
Gene Tree for OR4D1 (if available)

Paralogs for OR4D1 Gene

(443) SIMAP similar genes for OR4D1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR4D1: view

Variants for OR4D1 Gene

Sequence variations from dbSNP and Humsavar for OR4D1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1075009 -- 58,153,502(+) CCCTC(A/G)TAAGT upstream-variant-2KB
rs111333003 -- 58,153,721(+) TACTT(C/G)TGGAA upstream-variant-2KB
rs112470493 -- 58,155,559(+) CCATC(A/T)TGAAC upstream-variant-2KB, reference, missense
rs113393553 -- 58,155,107(+) GTTTG(A/T)TTGTT upstream-variant-2KB
rs114029935 -- 58,154,788(+) ATTCA(C/T)TGATT upstream-variant-2KB

Variation tolerance for OR4D1 Gene

Residual Variation Intolerance Score: 60% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.67; 86.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR4D1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR4D1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OR4D1 Gene

Disorders for OR4D1 Gene

Relevant External Links for OR4D1

Genetic Association Database (GAD)
OR4D1
Human Genome Epidemiology (HuGE) Navigator
OR4D1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR4D1

No disorders were found for OR4D1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR4D1 Gene

Publications for OR4D1 Gene

  1. Specific repertoire of olfactory receptor genes in the male germ cells of several mammalian species. (PMID: 9119360) Vanderhaeghen P. … Parmentier M. (Genomics 1997) 2 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4 64
  4. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4 64
  5. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 64

Products for OR4D1 Gene

Sources for OR4D1 Gene

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