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OR4C6 Gene

protein-coding   GIFtS: 47
GCID: GC11P055432

Olfactory Receptor, Family 4, Subfamily C, Member 6

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Olfactory Receptor, Family 4, Subfamily C, Member 61 2
Olfactory Receptor OR11-1382 3
OR11-1382
Olfactory Receptor 4C62

External Ids:    HGNC: 147431   Entrez Gene: 2194322   Ensembl: ENSG000001819037   UniProtKB: Q8NH723   

Export aliases for OR4C6 gene to outside databases

Previous GC identifers: GC11U990319 GC11P055209 GC11P055189


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for OR4C6 Gene:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the
perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled
receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain
structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G
protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the
genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent
of other organisms. (provided by RefSeq, Jul 2008)

GeneCards Summary for OR4C6 Gene:
OR4C6 (olfactory receptor, family 4, subfamily C, member 6) is a protein-coding gene. Diseases associated with OR4C6 include neuronitis. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR4C5.

UniProtKB/Swiss-Prot: OR4C6_HUMAN, Q8NH72
Function: Odorant receptor (Potential)

Gene Wiki entry for OR4C6 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000011.10  NC_018922.2  NT_167190.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the OR4C6 gene promoter:
         AML1a   Brachyury   Egr-1   Pax-2   CUTL1   Pax-2a   Tal-1beta   Egr-4   Pax-4a   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidOR4C6 promoter sequence
   Search Chromatin IP Primers for OR4C6

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OR4C6


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q11   Ensembl cytogenetic band:  11q11   HGNC cytogenetic band: 11q11

OR4C6 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OR4C6 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P055432:  view genomic region     (about GC identifiers)

Start:
55,432,643 bp from pter      End:
55,433,569 bp from pter
Size:
927 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: OR4C6_HUMAN, Q8NH72 (See protein sequence)
Recommended Name: Olfactory receptor 4C6  
Size: 309 amino acids; 34558 Da
Secondary accessions: B2RP11 Q6IFD2

Explore the universe of human proteins at neXtProt for OR4C6: NX_Q8NH72

Explore proteomics data for OR4C6 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn6
  • HORDE protein sequence for OR4C6

    See OR4C6 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001004704.1  
    ENSEMBL proteins: 
     ENSP00000324769  
    Reactome Protein details: Q8NH72

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    OR4: GPCR / Class A : Olfactory receptors

    3 InterPro protein domains:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR000725 Olfact_rcpt
     IPR000276 GPCR_Rhodpsn

    Graphical View of Domain Structure for InterPro Entry Q8NH72

    ProtoNet protein and cluster: Q8NH72

    1 Blocks protein domain: IPB000725 Olfactory receptor signature

    UniProtKB/Swiss-Prot: OR4C6_HUMAN, Q8NH72
    Similarity: Belongs to the G-protein coupled receptor 1 family


    OR4C6 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: OR4C6_HUMAN, Q8NH72
    Function: Odorant receptor (Potential)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004930G-protein coupled receptor activity IEA--
    GO:0004984olfactory receptor activity IEA--
         
    OR4C6 for ontologies           About GeneDecksing


    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    OR4C6_HUMAN, Q8NH72: Cell membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral component of membrane IEA--

    OR4C6 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for OR4C6 About                                                                                                See pathways by source

    SuperPathContained pathways About
    1Olfactory Signaling Pathway
    Olfactory Signaling Pathway0.82
    Olfactory transduction0.82
    2Signaling by GPCR
    Signaling by GPCR0.90
    Signal Transduction0.58
    GPCR downstream signaling0.90

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for OR4C6
        Olfactory Signaling Pathway


    1 Kegg Pathway  (Kegg details for OR4C6):
        Olfactory transduction


    OR4C6 for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OR4C6
    Interactions:

        Search GeneGlobe Interaction Network for OR4C6

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for OR4C6 (ENSP000003247694) via UniProtKB, MINT, STRING, and/or I2D (see all 273)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    OR52E6ENSP000003288784STRING: ENSP00000369279 STRING: ENSP00000328878
    OR10Q1ENSP000003143244STRING: ENSP00000314324
    OR4A16ENSP000003251284STRING: ENSP00000325128
    OR4A5ENSP000003676644STRING: ENSP00000367664
    OR4C11ENSP000003066514STRING: ENSP00000306651
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007186G-protein coupled receptor signaling pathway ----

    OR4C6 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for OR4C6



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for OR4C6 gene: 
    NM_001004704.1  

    Unigene Cluster for OR4C6:

    Olfactory receptor, family 4, subfamily C, member 6
    Hs.511921
    Unigene Representative Sequence: BC137218
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000314259(uc010rik.2)
    miRNA
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      QuantiFast Probe-based Assays in human, mouse, rat OR4C6

    Additional mRNA sequence: 

    BC137216.1 BC137218.1 

    6 AceView cDNA sequences:

    CR593785 NM_001004704 BX403225 BX330269 BX327855 BX358306 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    OR4C6 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AAGAAACTCT
    OR4C6 Expression
    About this image

    OR4C6 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    OR4C6 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.511921
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for OR4C6 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Olfr12301 olfactory receptor 1230 78.37(n)
    77.15(a)
      258785  NM_146789.1  NP_667000.1 


    ENSEMBL Gene Tree for OR4C6 (if available)
    TreeFam Gene Tree for OR4C6 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for OR4C6 gene
    OR4C52  OR4S12  OR4A472  OR4X22  OR4A162  OR4C152  OR4C132  OR4C462  
    OR4C162  OR4C32  OR4X12  OR4S22  OR4A152  OR4C112  OR4A52  OR4C122  
    OR4B12  OR4A8P2  
    Selected SIMAP similar genes for OR4C6 using alignment to 1 protein entry:     OR4C6_HUMAN(see all similar genes):
    OR4A15    OR4C13    OR4C46    OR4C15    OR4A47    OR4C12
    OR4C5    OR4A4P    OR4C3    OR4A8P    OR4S2    OR4X1
    OR4X2    OR4A16    OR4A5    OR4Q3    OR4B1    OR4C11

    OR4C6 for paralogs           About GeneDecksing


    3 Pseudogenes.org Pseudogenes for OR4C6
    PGOHUM00000261111 PGOHUM00000257882 PGOHUM00000242715


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for OR4C6 (see all 136)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1439327331,2
    C,Funtested155433266(+) GCCATC/GTTTCT 2 I M mis11Minor allele frequency- G:0.00NA 4550
    rs2014092951,2
    C--55430663(+) TATGG-/AAAAAA 1 -- us2k10--------
    rs2956041,2
    C,F,O,A--55430698(+) GAAGTG/AAGTGG 1 -- us2k115Minor allele frequency- A:0.44NA WA CSA EA 511
    rs1430933241,2
    --55430844(+) AGGTCC/TCAAAC 1 -- us2k10--------
    rs1482449921,2
    --55430934(+) AAATCA/CTACCC 1 -- us2k10--------
    rs756047851,2
    C,F--55431017(+) TACTCA/TTCTAG 1 -- us2k14Minor allele frequency- T:0.05WA CSA 123
    rs1915637401,2
    --55431076(+) AGCAGC/TATGCT 1 -- us2k10--------
    rs1837779231,2
    --55431095(+) GATTAA/CGTTAG 1 -- us2k10--------
    rs112305901,2
    C--55431176(+) GGATTG/TTTGCA 1 -- us2k14Minor allele frequency- T:0.24CSA WA NA EA 360
    rs342931561,2
    C,F--55431190(+) AAGTAC/TTCAGT 1 -- us2k15Minor allele frequency- T:0.07NA 128

    HapMap Linkage Disequilibrium report for OR4C6 ( 55432643 - 55433569 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for OR4C6 (see all 50):    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv212e199CNV Deletion23128226
    dgv213e199CNV Deletion23128226
    esv2421634CNV Deletion20811451
    dgv211e199CNV Deletion23128226
    dgv5e49CNV Loss18971310
    nsv468563CNV Loss19166990
    dgv217n67CNV Loss20364138
    nsv508632CNV Loss20534489
    dgv13n68CNV Loss17160897
    dgv12n68CNV Loss17160897

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for OR4C6:    About MalaCards
    neuronitis


    OR4C6 for disorders           About GeneDecksing

    Human Genome Epidemiology (HuGE) Navigator: OR4C6 (1 document)

    Export disorders for OR4C6 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for OR4C6 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with OR4C6)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    4. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 219432 HGNC: 14743 AceView: OR4C6 Ensembl:ENSG00000181903 euGenes: HUgn219432
    ECgene: OR4C6 Kegg: 219432 H-InvDB: OR4C6

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for OR4C6 Pharmacogenomics, SNPs, Pathways
    HORDE entry for OR4C6 The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for OR4C6 gene:
    Search GeneIP for patents involving OR4C6

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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