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OR4C3 Gene

protein-coding   GIFtS: 47
GCID: GC11P048346

Olfactory Receptor, Family 4, Subfamily C, Member 3

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Olfactory Receptor, Family 4, Subfamily C, Member 31 2
Olfactory Receptor OR11-982 3
OR11-982
Olfactory Receptor 4C32

External Ids:    HGNC: 146971   Entrez Gene: 2561442   Ensembl: ENSG000001765477   UniProtKB: Q8NH373   

Export aliases for OR4C3 gene to outside databases

Previous GC identifers: GC16U990205 GC11P048311 GC11P048300


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for OR4C3 Gene:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the
perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled
receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain
structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G
protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the
genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent
of other organisms. (provided by RefSeq, Jul 2008)

GeneCards Summary for OR4C3 Gene:
OR4C3 (olfactory receptor, family 4, subfamily C, member 3) is a protein-coding gene. Diseases associated with OR4C3 include neuronitis. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR4C5.

UniProtKB/Swiss-Prot: OR4C3_HUMAN, Q8NH37
Function: Odorant receptor (Potential)

Gene Wiki entry for OR4C3 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000011.10  NC_018922.2  NT_009237.19  
Regulatory elements:
   Regulatory transcription factor binding sites in the OR4C3 gene promoter:
         SRF   AML1a   SRF (504 AA)   HSF1 (long)   CUTL1   FOXL1   FOXC1   HSF1short   LyF-1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for OR4C3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OR4C3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p11.2   Ensembl cytogenetic band:  11p11.2   HGNC cytogenetic band: 11p11.2

OR4C3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OR4C3 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P048346:  view genomic region     (about GC identifiers)

Start:
48,346,574 bp from pter      End:
48,347,479 bp from pter
Size:
906 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: OR4C3_HUMAN, Q8NH37 (See protein sequence)
Recommended Name: Olfactory receptor 4C3  
Size: 302 amino acids; 33726 Da
Sequence caution: Sequence=AAI36854.1; Type=Erroneous initiation; Sequence=AAI36855.1; Type=Erroneous initiation;
Sequence=BAC05803.1; Type=Erroneous initiation; Sequence=DAA04747.1; Type=Erroneous initiation;
Sequence=EAW67868.1; Type=Erroneous initiation;
Secondary accessions: B2RNF2 Q6IFB3

Explore the universe of human proteins at neXtProt for OR4C3: NX_Q8NH37

Explore proteomics data for OR4C3 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn6
  • Modification sites at PhosphoSitePlus
  • HORDE protein sequence for OR4C3

    See OR4C3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001004702.1  
    ENSEMBL proteins: 
     ENSP00000321419  
    Reactome Protein details: Q8NH37

    OR4C3 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    OR4: GPCR / Class A : Olfactory receptors

    3 InterPro protein domains:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR000725 Olfact_rcpt
     IPR000276 GPCR_Rhodpsn

    Graphical View of Domain Structure for InterPro Entry Q8NH37

    ProtoNet protein and cluster: Q8NH37

    1 Blocks protein domain: IPB000725 Olfactory receptor signature

    UniProtKB/Swiss-Prot: OR4C3_HUMAN, Q8NH37
    Similarity: Belongs to the G-protein coupled receptor 1 family


    OR4C3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: OR4C3_HUMAN, Q8NH37
    Function: Odorant receptor (Potential)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004930G-protein coupled receptor activity IEA--
    GO:0004984olfactory receptor activity IEA--
         
    OR4C3 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for OR4C3:
     Synthetic lethal with c-Myc af 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for OR4C3
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    OR4C3_HUMAN, Q8NH37: Cell membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral component of membrane IEA--

    OR4C3 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for OR4C3 About    
    See pathways by source

    SuperPathContained pathways About
    1Olfactory Signaling Pathway
    Olfactory Signaling Pathway0.82
    Olfactory transduction0.82
    2Signaling by GPCR
    Signaling by GPCR0.90
    Signal Transduction0.58
    GPCR downstream signaling0.90

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 Reactome Pathway for OR4C3
        Olfactory Signaling Pathway


    1 Kegg Pathway  (Kegg details for OR4C3):
        Olfactory transduction


    OR4C3 for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OR4C3
    Interactions:

        Search GeneGlobe Interaction Network for OR4C3

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for OR4C3 (ENSP000003214194) via UniProtKB, MINT, STRING, and/or I2D (see all 273)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    OR52E6ENSP000003288784STRING: ENSP00000369279 STRING: ENSP00000328878
    OR1A1ENSP000003052074STRING: ENSP00000305207
    OR1A2ENSP000003713774STRING: ENSP00000371377
    OR4E2ENSP000003861954STRING: ENSP00000386195
    OR51I1ENSP000003695594STRING: ENSP00000369559
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007186G-protein coupled receptor signaling pathway ----

    OR4C3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for OR4C3



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for OR4C3 gene: 
    NM_001004702.1  

    Unigene Cluster for OR4C3:

    Olfactory receptor, family 4, subfamily C, member 3
    Hs.553656
    Unigene Representative Sequence: BC136854
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000319856(uc010rhv.2)
    miRNA
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    Primer
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      QuantiFast Probe-based Assays in human, mouse, rat OR4C3

    Additional mRNA sequence: 

    BC136853.1 BC136854.1 

    1 AceView cDNA sequence:

    NM_001004702 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    OR4C3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTAAGAAATT
    OR4C3 Expression
    About this image

    OR4C3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    OR4C3 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.553656
        Custom PCR Arrays for OR4C3
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for OR4C3 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Olfr1401 , 5 olfactory receptor 1401, 5 81.44(n)1
    78(a)1
      2 (50.14 cM)5
    572721  NM_020515.11  NP_065261.11 
     900514145 


    ENSEMBL Gene Tree for OR4C3 (if available)
    TreeFam Gene Tree for OR4C3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for OR4C3 gene
    OR4C52  OR4S12  OR4A472  OR4X22  OR4A162  OR4C152  OR4C132  OR4C62  
    OR4C462  OR4C162  OR4X12  OR4S22  OR4A152  OR4C112  OR4A52  OR4C122  
    OR4B12  OR4A8P2  
    Selected SIMAP similar genes for OR4C3 using alignment to 1 protein entry:     OR4C3_HUMAN(see all similar genes):
    OR4C12    OR4C15    OR4C13    OR4C46    OR4A15    OR4X2
    OR4A47    OR4C5    OR4A4P    OR4C11    OR4C6    OR4S1
    OR4X1    OR4A5    OR4B1    OR4D11    OR4D5    OR4Q2

    OR4C3 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for OR4C3
    PGOHUM00000261561


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for OR4C3 (see all 304)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs798916981,2
    Cuntested148347142(+) CAATAC/TGTATG 2 T M mis11Minor allele frequency- T:0.50NA 2
    rs791248011,2
    Cuntested148347144(+) ATACGC/TATGTC 2 H Y mis11Minor allele frequency- T:0.50NA 2
    rs2006397411,2
    C--48344502(+) GCAGA-/GAAGG 
            
    GGAGG
    1 -- us2k10--------
    rs775188161,2
    C--48344522(+) AACCC-/AGATGT 1 -- us2k10--------
    rs745625971,2
    C--48344549(+) GGTACC/TGTGAA 1 -- us2k11Minor allele frequency- T:0.50NA 2
    rs1434022391,2
    --48344550(+) GTACTC/GTGAAG 1 -- us2k10--------
    rs802154041,2
    C--48344555(+) GTGAAG/ACCCAC 1 -- us2k11Minor allele frequency- A:0.50NA 2
    rs1113595101,2
    C--48344563(+) CACAA-/ACTCTGT 1 -- us2k11Minor allele frequency- AC:0.50CSA 2
    rs797402621,2
    --48344608(+) TCACTG/TATTAG 1 -- us2k11Minor allele frequency- T:0.50NA 2
    rs1887810861,2
    --48344611(+) CTGATG/TAGTTA 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for OR4C3 ( 48346574 - 48347479 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for OR4C3 (see all 12):    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2744448CNV Deletion23290073
    nsv469953CNV Loss18288195
    nsv428253CNV Loss18775914
    dgv48e55CNV Loss17911159
    nsv508628CNV Loss20534489
    dgv1092n71CNV Loss21882294
    nsv467873CNV Loss19166990
    dgv1091n71CNV Gain21882294
    nsv467871CNV Gain19166990
    nsv897333CNV Gain21882294

    Human Gene Mutation Database (HGMD): OR4C3
    Site Specific Mutation Identification with PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing OR4C3
    DNA2.0 Custom Variant and Variant Library Synthesis for OR4C3

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for OR4C3:    
    About MalaCards
    neuronitis


    OR4C3 for disorders           About GeneDecksing


    Export disorders for OR4C3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for OR4C3 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with OR4C3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004)
    2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    4. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 256144 HGNC: 14697 AceView: OR4C3 Ensembl:ENSG00000176547 euGenes: HUgn256144
    ECgene: OR4C3 Kegg: 256144 H-InvDB: OR4C3

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for OR4C3 Pharmacogenomics, SNPs, Pathways
    HORDE entry for OR4C3 The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for OR4C3 gene:
    Search GeneIP for patents involving OR4C3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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     OriGene Antibodies for OR4C3   OriGene RNAi products in human, mouse, rat for OR4C3  
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     Block miRNA regulation of human, mouse, rat OR4C3 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing OR4C3
     DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OR4C3 Predesigned siRNA for gene silencing in human, mouse, rat OR4C3
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     Search Tocris compounds for OR4C3
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     Novus Tissue Slides
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     Browse ESI BIO Cell Lines and PureStem Progenitors for OR4C3
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     Search ThermoFisher Antibodies for OR4C3
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR4C3
     inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for OR4C3
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     LSBio Antibodies in human, mouse, rat for OR4C3
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