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Aliases for OR4C12 Gene

Aliases for OR4C12 Gene

  • Olfactory Receptor Family 4 Subfamily C Member 12 2 3 5
  • Olfactory Receptor OR11-259 3 4
  • Olfactory Receptor, Family 4, Subfamily C, Member 12 2
  • Seven Transmembrane Helix Receptor 3
  • Olfactory Receptor 4C12 3
  • OR11-259 3

External Ids for OR4C12 Gene

Previous GeneCards Identifiers for OR4C12 Gene

  • GC11U990545
  • GC11M049959
  • GC11M049894
  • GC11M050076
  • GC11M050568
  • GC11M050625
  • GC11M050845
  • GC11M051637
  • GC11M052299
  • GC11M052959

Summaries for OR4C12 Gene

Entrez Gene Summary for OR4C12 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4C12 Gene

OR4C12 (Olfactory Receptor Family 4 Subfamily C Member 12) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and transmembrane signaling receptor activity. An important paralog of this gene is OR4C13.

UniProtKB/Swiss-Prot for OR4C12 Gene

  • Odorant receptor.

Gene Wiki entry for OR4C12 Gene

Additional gene information for OR4C12 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR4C12 Gene

Genomics for OR4C12 Gene

Regulatory Elements for OR4C12 Gene


Genomic Location for OR4C12 Gene

Chromosome:
11
Start:
49,981,473 bp from pter
End:
49,982,535 bp from pter
Size:
1,063 bases
Orientation:
Minus strand

Genomic View for OR4C12 Gene

Genes around OR4C12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR4C12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR4C12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR4C12 Gene

Proteins for OR4C12 Gene

  • Protein details for OR4C12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96R67-OR4CC_HUMAN
    Recommended name:
    Olfactory receptor 4C12
    Protein Accession:
    Q96R67
    Secondary Accessions:
    • B2RNF0
    • Q6IF49

    Protein attributes for OR4C12 Gene

    Size:
    309 amino acids
    Molecular mass:
    34491 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR4C12 Gene

Post-translational modifications for OR4C12 Gene

  • Glycosylation at posLast=66
  • Modification sites at PhosphoSitePlus

Other Protein References for OR4C12 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR4C12 Gene

Domains & Families for OR4C12 Gene

Gene Families for OR4C12 Gene

HGNC:
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OR4C12 Gene

Suggested Antigen Peptide Sequences for OR4C12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96R67

UniProtKB/Swiss-Prot:

OR4CC_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR4C12: view

Function for OR4C12 Gene

Molecular function for OR4C12 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4C12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR4C12: view

Phenotypes for OR4C12 Gene

GenomeRNAi human phenotypes for OR4C12:
genes like me logo Genes that share phenotypes with OR4C12: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for OR4C12
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR4C12 Gene

Localization for OR4C12 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4C12 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR4C12 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR4C12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR4C12: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OR4C12 Gene

Pathways & Interactions for OR4C12 Gene

genes like me logo Genes that share pathways with OR4C12: view

Pathways by source for OR4C12 Gene

Interacting Proteins for OR4C12 Gene

Gene Ontology (GO) - Biological Process for OR4C12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050907 detection of chemical stimulus involved in sensory perception IBA --
genes like me logo Genes that share ontologies with OR4C12: view

No data available for SIGNOR curated interactions for OR4C12 Gene

Drugs & Compounds for OR4C12 Gene

No Compound Related Data Available

Transcripts for OR4C12 Gene

mRNA/cDNA for OR4C12 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for OR4C12
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for OR4C12 Gene

No ASD Table

Relevant External Links for OR4C12 Gene

GeneLoc Exon Structure for
OR4C12
ECgene alternative splicing isoforms for
OR4C12

Expression for OR4C12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR4C12 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR4C12 Gene:

OR4C12

SOURCE GeneReport for Unigene cluster for OR4C12 Gene:

Hs.553669
genes like me logo Genes that share expression patterns with OR4C12: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR4C12 Gene

Orthologs for OR4C12 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR4C12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466885 33
  • 99.14 (n)
OR4C12 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OR4C12 33
  • 87.38 (n)
-- 34
  • 86 (a)
OneToMany
-- 34
  • 84 (a)
OneToMany
cow
(Bos Taurus)
Mammalia OR4C12 33
  • 85.87 (n)
-- 34
  • 82 (a)
OneToMany
-- 34
  • 82 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Or4c12b 52 Olfr1255 33 16 34
  • 85.31 (n)
Or4c12 52 Olfr1259 34
  • 83 (a)
OneToMany
Or4c58 52 Olfr48
  • chr2:89,844,069-89,844,971
platypus
(Ornithorhynchus anatinus)
Mammalia OR4C12 34
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 67 (a)
ManyToMany
Species where no ortholog for OR4C12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR4C12 Gene

ENSEMBL:
Gene Tree for OR4C12 (if available)
TreeFam:
Gene Tree for OR4C12 (if available)

Paralogs for OR4C12 Gene

Paralogs for OR4C12 Gene

(447) SIMAP similar genes for OR4C12 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for OR4C12 Gene

genes like me logo Genes that share paralogs with OR4C12: view

Variants for OR4C12 Gene

Sequence variations from dbSNP and Humsavar for OR4C12 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs193920780 Uncertain significance 49,982,428(-) AGTCA(C/T)GTTTG reference, missense
rs11040695 -- 49,981,489(+) CAGCC(C/T)CTTGT utr-variant-3-prime
rs112073212 -- 49,981,462(+) CTTTA(C/T)TGACT downstream-variant-500B
rs112828389 -- 49,984,447(+) TATTT(C/T)TACAG upstream-variant-2KB
rs112929537 -- 49,982,483(+) AGTCA(C/T)ATTCT reference, missense

Structural Variations from Database of Genomic Variants (DGV) for OR4C12 Gene

Variant ID Type Subtype PubMed ID
dgv1128n100 CNV gain 25217958
dgv1130n100 CNV gain 25217958
dgv1813n54 CNV gain 21841781
esv2760533 CNV gain+loss 21179565
esv33425 CNV gain 17666407
esv3626326 CNV gain 21293372
esv3892002 CNV gain 25118596
esv3892003 CNV gain 25118596
nsv1048074 CNV gain 25217958
nsv428254 CNV loss 18775914
nsv467876 CNV gain 19166990

Variation tolerance for OR4C12 Gene

Residual Variation Intolerance Score: 78.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.72; 91.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR4C12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR4C12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR4C12 Gene

Disorders for OR4C12 Gene

Relevant External Links for OR4C12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR4C12

No disorders were found for OR4C12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR4C12 Gene

Publications for OR4C12 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B … Buck LB (Proceedings of the National Academy of Sciences of the United States of America 2004) 3 4 60
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T … Shamir R (Genomics 2002) 3 4 60
  3. Genome-wide molecular characterization of central nervous system primitive neuroectodermal tumor and pineoblastoma. (PMID: 21798848) Miller S … Grundy RG (Neuro-oncology 2011) 3 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for OR4C12 Gene

Sources for OR4C12 Gene

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