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Aliases for OR4A16 Gene

Aliases for OR4A16 Gene

  • Olfactory Receptor, Family 4, Subfamily A, Member 16 2 3
  • Olfactory Receptor OR11-117 3 4
  • Olfactory Receptor 4A16 3
  • OR11-117 3
  • OR4A16Q 3

External Ids for OR4A16 Gene

Previous GeneCards Identifiers for OR4A16 Gene

  • GC11U990560
  • GC11P054867
  • GC11P055110

Summaries for OR4A16 Gene

Entrez Gene Summary for OR4A16 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR4A16 Gene

OR4A16 (Olfactory Receptor, Family 4, Subfamily A, Member 16) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR4A5.

UniProtKB/Swiss-Prot for OR4A16 Gene

  • Odorant receptor.

Gene Wiki entry for OR4A16 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR4A16 Gene

Genomics for OR4A16 Gene

Regulatory Elements for OR4A16 Gene

Genomic Location for OR4A16 Gene

Start:
55,343,201 bp from pter
End:
55,344,187 bp from pter
Size:
987 bases
Orientation:
Plus strand

Genomic View for OR4A16 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR4A16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR4A16 Gene

Proteins for OR4A16 Gene

  • Protein details for OR4A16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NH70-O4A16_HUMAN
    Recommended name:
    Olfactory receptor 4A16
    Protein Accession:
    Q8NH70
    Secondary Accessions:
    • Q6IFL3

    Protein attributes for OR4A16 Gene

    Size:
    328 amino acids
    Molecular mass:
    36922 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR4A16 Gene

Proteomics data for OR4A16 Gene at MOPED

Post-translational modifications for OR4A16 Gene

  • Glycosylation at Asn6
  • Modification sites at PhosphoSitePlus

Other Protein References for OR4A16 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR4A16 Gene

Domains for OR4A16 Gene

Gene Families for OR4A16 Gene

HGNC:
  • OR4 :GPCR / Class A : Olfactory receptors

Protein Domains for OR4A16 Gene

Suggested Antigen Peptide Sequences for OR4A16 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NH70

UniProtKB/Swiss-Prot:

O4A16_HUMAN :
  • Q8NH70
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR4A16: view

Function for OR4A16 Gene

Molecular function for OR4A16 Gene

UniProtKB/Swiss-Prot Function: Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR4A16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR4A16: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR4A16

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OR4A16 Gene

Localization for OR4A16 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR4A16 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR4A16 Gene COMPARTMENTS Subcellular localization image for OR4A16 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR4A16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR4A16: view

Pathways for OR4A16 Gene

genes like me logo Genes that share pathways with OR4A16: view

Pathways by source for OR4A16 Gene

Interacting Proteins for OR4A16 Gene

Gene Ontology (GO) - Biological Process for OR4A16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0050907 detection of chemical stimulus involved in sensory perception IBA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR4A16: view

Transcripts for OR4A16 Gene

mRNA/cDNA for OR4A16 Gene

(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR4A16

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for OR4A16

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR4A16 Gene

No ASD Table

Relevant External Links for OR4A16 Gene

GeneLoc Exon Structure for
OR4A16
ECgene alternative splicing isoforms for
OR4A16

Expression for OR4A16 Gene

mRNA expression in normal human tissues for OR4A16 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for OR4A16 Gene

SOURCE GeneReport for Unigene cluster for OR4A16 Gene Hs.554530

genes like me logo Genes that share expressions with OR4A16: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for OR4A16 Gene

Orthologs for OR4A16 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR4A16 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC746859 35
  • 91.57 (n)
  • 83.84 (a)
OR4A16 36
  • 84 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 60 (a)
ManyToMany
LOC100294956 35
  • 69.53 (n)
  • 62.71 (a)
mouse
(Mus musculus)
Mammalia Olfr1238 36
  • 73 (a)
ManyToMany
Olfr1240 35
  • 78.7 (n)
  • 71.88 (a)
Olfr1240 16
Olfr1240 36
  • 72 (a)
ManyToMany
Olfr1241 36
  • 70 (a)
ManyToMany
Olfr1242 36
  • 64 (a)
ManyToMany
Olfr1243 36
  • 66 (a)
ManyToMany
Olfr1245 36
  • 71 (a)
ManyToMany
Olfr1246 36
  • 67 (a)
ManyToMany
Olfr1247 36
  • 70 (a)
ManyToMany
Olfr1248 36
  • 67 (a)
ManyToMany
Olfr1249 36
  • 65 (a)
ManyToMany
Olfr1250 36
  • 68 (a)
ManyToMany
Olfr1251 36
  • 65 (a)
ManyToMany
Olfr1252 36
  • 68 (a)
ManyToMany
Olfr1253 36
  • 65 (a)
ManyToMany
Olfr1254 36
  • 68 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia OPOR77 36
  • 70 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 64 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Olr702 35
  • 77.96 (n)
  • 69.68 (a)
Species with no ortholog for OR4A16:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR4A16 Gene

ENSEMBL:
Gene Tree for OR4A16 (if available)
TreeFam:
Gene Tree for OR4A16 (if available)

Paralogs for OR4A16 Gene

Selected SIMAP similar genes for OR4A16 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for OR4A16 Gene

genes like me logo Genes that share paralogs with OR4A16: view

Variants for OR4A16 Gene

Sequence variations from dbSNP and Humsavar for OR4A16 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs7121804 -- 55,343,746(+) CCATT(A/G)TTGGA synonymous-codon, reference
rs9666472 -- 55,341,768(+) GATGA(A/G)TCACA upstream-variant-2KB
rs9666583 -- 55,341,535(+) CATAG(A/T)AGACA upstream-variant-2KB
rs10750871 -- 55,342,801(+) TTGAG(A/G)GTGGG upstream-variant-2KB
rs10896659 - 55,344,108(+) TGAAA(A/T)GTTAA reference, missense

Structural Variations from Database of Genomic Variants (DGV) for OR4A16 Gene

Variant ID Type Subtype PubMed ID
esv2751030 CNV Gain 17911159
nsv524091 CNV Gain 19592680
nsv832153 CNV Loss 17160897
dgv68n21 CNV Loss 19592680
nsv467886 CNV Gain 19166990
esv998925 CNV Deletion 20482838
nsv825891 CNV Loss 20364138

Relevant External Links for OR4A16 Gene

HapMap Linkage Disequilibrium report
OR4A16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR4A16 Gene

Disorders for OR4A16 Gene

No disorders were found for OR4A16 Gene.

No data available for UniProtKB/Swiss-Prot for OR4A16 Gene

Publications for OR4A16 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OR4A16 Gene

Sources for OR4A16 Gene

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