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Aliases for OR3A4P Gene

Aliases for OR3A4P Gene

  • Olfactory Receptor, Family 3, Subfamily A, Member 4 Pseudogene 2 3
  • OR17-24 3 4
  • OR3A5P 3 4
  • OR3A4 3 4
  • Olfactory Receptor, Family 3, Subfamily A, Member 5 Pseudogene 3
  • Olfactory Receptor, Family 3, Subfamily A, Member 4 2
  • Olfactory Receptor OR17-13 Pseudogene 3
  • Olfactory Receptor OR17-16 Pseudogene 3
  • Olfactory Receptor 17-24 4
  • Olfactory Receptor 3A5 4
  • OR17-16 3
  • OLFRA06 3
  • OR17-25 3
  • OLFRA05 3
  • OR17-13 3
  • OR25 3
  • OR24 3

External Ids for OR3A4P Gene

Previous HGNC Symbols for OR3A4P Gene

  • OR3A4

Previous GeneCards Identifiers for OR3A4P Gene

  • GC17P003214
  • GC17P003216
  • GC17P003222
  • GC17P003228
  • GC17P003233

Summaries for OR3A4P Gene

Entrez Gene Summary for OR3A4P Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. This olfactory receptor gene is transcribed and contains an intact ORF, but it is predicted to be a pseudogene due to a poorly conserved 7-transmembrane domain structure. [provided by RefSeq, Sep 2008]

GeneCards Summary for OR3A4P Gene

OR3A4P (Olfactory Receptor, Family 3, Subfamily A, Member 4 Pseudogene) is a Pseudogene. Among its related pathways are Signaling by GPCR and Signaling by GPCR.

UniProtKB/Swiss-Prot for OR3A4P Gene

  • Odorant receptor.

Gene Wiki entry for OR3A4P Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR3A4P Gene

Genomics for OR3A4P Gene

Genomic Location for OR3A4P Gene

Start:
3,310,245 bp from pter
End:
3,311,446 bp from pter
Size:
1,202 bases
Orientation:
Plus strand

Genomic View for OR3A4P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR3A4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR3A4P Gene

No data available for Regulatory Elements for OR3A4P Gene

Proteins for OR3A4P Gene

  • Protein details for OR3A4P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P47883-OR3A4_HUMAN
    Recommended name:
    Putative olfactory receptor 3A4
    Protein Accession:
    P47883
    Secondary Accessions:
    • Q96R24

    Protein attributes for OR3A4P Gene

    Size:
    348 amino acids
    Molecular mass:
    37194 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR3A4P Gene

Proteomics data for OR3A4P Gene at MOPED

Post-translational modifications for OR3A4P Gene

Other Protein References for OR3A4P Gene

Reactome Protein details:

No data available for DME Specific Peptides for OR3A4P Gene

Domains for OR3A4P Gene

Gene Families for OR3A4P Gene

HGNC:
  • OR3 :GPCR / Class A : Olfactory receptors

Protein Domains for OR3A4P Gene

Graphical View of Domain Structure for InterPro Entry

P47883

UniProtKB/Swiss-Prot:

OR3A4_HUMAN :
  • P47883
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR3A4P: view

No data available for Suggested Antigen Peptide Sequences for OR3A4P Gene

Function for OR3A4P Gene

Molecular function for OR3A4P Gene

GENATLAS Biochemistry: olfactory receptor gene family 3,subfamily A,member 4,pseudogene,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function: Odorant receptor.

Phenotypes for OR3A4P Gene

GenomeRNAi human phenotypes for OR3A4P:
genes like me logo Genes that share phenotypes with OR3A4P: view

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR3A4P

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OR3A4P Gene

Localization for OR3A4P Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR3A4P Gene

Cell membrane; Multi-pass membrane protein.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OR3A4P Gene

Pathways for OR3A4P Gene

genes like me logo Genes that share pathways with OR3A4P: view

Pathways by source for OR3A4P Gene

Interacting Proteins for OR3A4P Gene

Gene Ontology (GO) - Biological Process for OR3A4P Gene

None

Transcripts for OR3A4P Gene

mRNA/cDNA for OR3A4P Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR3A4P

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for OR3A4P
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR3A4P Gene

No ASD Table

Relevant External Links for OR3A4P Gene

GeneLoc Exon Structure for
OR3A4P
ECgene alternative splicing isoforms for
OR3A4P

Expression for OR3A4P Gene

mRNA expression in normal human tissues for OR3A4P Gene

mRNA differential expression in normal tissues according to GTEx for OR3A4P Gene

This gene is overexpressed in Testis (31.9), Brain - Caudate (basal ganglia) (7.7), Cervix - Ectocervix (6.8), and Cervix - Endocervix (6.6).

SOURCE GeneReport for Unigene cluster for OR3A4P Gene Hs.632245

genes like me logo Genes that share expressions with OR3A4P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for OR3A4P Gene

Orthologs for OR3A4P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for OR3A4P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Olfr399 16
Species with no ortholog for OR3A4P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR3A4P Gene

ENSEMBL:
Gene Tree for OR3A4P (if available)
TreeFam:
Gene Tree for OR3A4P (if available)

Paralogs for OR3A4P Gene

Selected SIMAP similar genes for OR3A4P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR3A4P: view

No data available for Paralogs for OR3A4P Gene

Variants for OR3A4P Gene

Sequence variations from dbSNP and Humsavar for OR3A4P Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs231677 - 3,311,020(+) GGGCA(A/G)AAAGA nc-transcript-variant
rs231678 - 3,310,887(+) CCTGC(G/T)CCAGT nc-transcript-variant
rs231679 -- 3,310,154(+) TCAAC(C/T)TCCTT upstream-variant-2KB
rs231680 -- 3,308,520(+) CTTCA(A/G)TGTGC upstream-variant-2KB
rs769429 -- 3,311,620(+) GAGTG(A/C/G)TCCCC downstream-variant-500B

Relevant External Links for OR3A4P Gene

HapMap Linkage Disequilibrium report
OR3A4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OR3A4P Gene

Disorders for OR3A4P Gene

No disorders were found for OR3A4P Gene.

No data available for UniProtKB/Swiss-Prot for OR3A4P Gene

Publications for OR3A4P Gene

  1. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4
  2. Sequence analysis in the olfactory receptor gene cluster on human chromosome 17: recombinatorial events affecting receptor diversity. (PMID: 8921386) Glusman G. … Lancet D. (Genomics 1996) 3 23
  3. Olfactory receptor gene cluster on human chromosome 17: possible duplication of an ancestral receptor repertoire. (PMID: 8004088) Ben-Arie N. … North M.A. (Hum. Mol. Genet. 1994) 3 4
  4. Sequence, structure, and evolution of a complete human olfactory receptor gene cluster. (PMID: 10673334) Glusman G. … Lancet D. (Genomics 2000) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OR3A4P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate OR3A4P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for OR3A4P
    • Block miRNA regulation of OR3A4P using miScript Target Protectors

    Sources for OR3A4P Gene

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