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Aliases for OR2J3 Gene

Aliases for OR2J3 Gene

  • Olfactory Receptor Family 2 Subfamily J Member 3 2 3 5
  • Olfactory Receptor OR6-16 3 4
  • Olfactory Receptor 6-6 3 4
  • HS6M1-3 3 4
  • OR6-6 3 4
  • Olfactory Receptor, Family 2, Subfamily J, Member 3 2
  • Olfactory Receptor 2J3 3
  • OR6.3.6 3
  • C3HEXS 3
  • OR6-16 3
  • ORL671 3
  • 6M1-3 3

External Ids for OR2J3 Gene

Previous GeneCards Identifiers for OR2J3 Gene

  • GC06U990203
  • GC06P029188
  • GC06P029079
  • GC06P028887

Summaries for OR2J3 Gene

Entrez Gene Summary for OR2J3 Gene

  • This gene encodes a G-protein-coupled receptor (GPCR) that functions as an olfactory receptor. Olfactory receptors interact with odorant molecules in the nose to initiate a neuronal response that triggers the perception of a smell. The protein encoded by this gene responds to cis-3-hexen-1-ol, which is released by wounded plants, including cut grass. This gene is situated in a cluster of similar olfactory-receptor coding genes on chromosome 6. [provided by RefSeq, May 2013]

GeneCards Summary for OR2J3 Gene

OR2J3 (Olfactory Receptor Family 2 Subfamily J Member 3) is a Protein Coding gene. Among its related pathways are Peptide ligand-binding receptors and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR2J1.

UniProtKB/Swiss-Prot for OR2J3 Gene

  • Odorant receptor involved in the detection of the flavor compound cis-3-hexen-1-ol (C3HEX), a compound typically described as green grassy or the smell of cut grass.

Gene Wiki entry for OR2J3 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR2J3 Gene

Genomics for OR2J3 Gene

Regulatory Elements for OR2J3 Gene

Enhancers for OR2J3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028814 1 FANTOM5 2.9 -297.4 -297433 0.1 ATF1 PKNOX1 CREB3L1 ZNF2 ETS1 KLF7 REST ZNF518A ZNF592 KAT8 ZNF311 ZKSCAN3 ZFP57 ZBED9 ZNF602P OR14J1 GPX6 OR2W1 OR2J3 OR2B3
GH06G029467 0.3 FANTOM5 6.4 +355.9 355890 0.3 OR10C1 ZFP57 MAS1L OR11A1 OR14J1 OR2W1 OR2J3 OR2B3 OR12D2 OR5V1
GH06G028854 0.6 FANTOM5 2.1 -256.9 -256927 0.2 FOXA2 HDAC2 ZMYM3 ZBTB33 KDM1A HCG14 TRIM27 ENSG00000244349 HCG15 ZNF602P OR2J3 OR2B3 OR14J1 RPL13P ENSG00000225173
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR2J3 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR2J3 Gene

Chromosome:
6
Start:
29,111,810 bp from pter
End:
29,112,884 bp from pter
Size:
1,075 bases
Orientation:
Plus strand

Genomic View for OR2J3 Gene

Genes around OR2J3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2J3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2J3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for OR2J3 Gene

  • Protein details for OR2J3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O76001-OR2J3_HUMAN
    Recommended name:
    Olfactory receptor 2J3
    Protein Accession:
    O76001
    Secondary Accessions:
    • B0UY52
    • B9EH11
    • Q5SUJ7
    • Q6IF25
    • Q96R15
    • Q9GZK5
    • Q9GZL4
    • Q9GZL5

    Protein attributes for OR2J3 Gene

    Size:
    311 amino acids
    Molecular mass:
    34950 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR2J3 Gene

Post-translational modifications for OR2J3 Gene

Other Protein References for OR2J3 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR2J3 Gene

Domains & Families for OR2J3 Gene

Gene Families for OR2J3 Gene

Protein Domains for OR2J3 Gene

Suggested Antigen Peptide Sequences for OR2J3 Gene

Graphical View of Domain Structure for InterPro Entry

O76001

UniProtKB/Swiss-Prot:

OR2J3_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR2J3: view

Function for OR2J3 Gene

Molecular function for OR2J3 Gene

GENATLAS Biochemistry:
olfactory receptor,family 2,subfamily J,member 3,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function:
Odorant receptor involved in the detection of the flavor compound cis-3-hexen-1-ol (C3HEX), a compound typically described as green grassy or the smell of cut grass.

Gene Ontology (GO) - Molecular Function for OR2J3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR2J3: view

Phenotypes for OR2J3 Gene

genes like me logo Genes that share phenotypes with OR2J3: view

Animal Model Products

CRISPR Products

miRNA for OR2J3 Gene

miRTarBase miRNAs that target OR2J3

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for OR2J3 Gene

Localization for OR2J3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR2J3 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR2J3 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR2J3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR2J3: view

Pathways & Interactions for OR2J3 Gene

genes like me logo Genes that share pathways with OR2J3: view

Pathways by source for OR2J3 Gene

1 KEGG pathway for OR2J3 Gene

Interacting Proteins for OR2J3 Gene

Gene Ontology (GO) - Biological Process for OR2J3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IBA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR2J3: view

No data available for SIGNOR curated interactions for OR2J3 Gene

Drugs & Compounds for OR2J3 Gene

No Compound Related Data Available

Transcripts for OR2J3 Gene

mRNA/cDNA for OR2J3 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR2J3 Gene

No ASD Table

Relevant External Links for OR2J3 Gene

GeneLoc Exon Structure for
OR2J3
ECgene alternative splicing isoforms for
OR2J3

Expression for OR2J3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR2J3 Gene

mRNA differential expression in normal tissues according to GTEx for OR2J3 Gene

This gene is overexpressed in Testis (x31.4).

NURSA nuclear receptor signaling pathways regulating expression of OR2J3 Gene:

OR2J3

SOURCE GeneReport for Unigene cluster for OR2J3 Gene:

Hs.738947
genes like me logo Genes that share expression patterns with OR2J3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR2J3 Gene

Orthologs for OR2J3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR2J3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC471931 34
  • 99.04 (n)
OR2J3 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 35
  • 88 (a)
OneToMany
-- 35
  • 88 (a)
OneToMany
OR2J3 34
  • 87.59 (n)
-- 35
  • 87 (a)
OneToMany
-- 35
  • 86 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 60 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Olfr1381 35
  • 56 (a)
ManyToMany
Or2j3 55 Olfr137
  • chr17:38,304,524-38,305,459
Species where no ortholog for OR2J3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR2J3 Gene

ENSEMBL:
Gene Tree for OR2J3 (if available)
TreeFam:
Gene Tree for OR2J3 (if available)

Paralogs for OR2J3 Gene

Paralogs for OR2J3 Gene

(445) SIMAP similar genes for OR2J3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR2J3: view

Variants for OR2J3 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for OR2J3 Gene

OR2J3_HUMAN-O76001
Variants Ala-113 and Gln-226 exhibit a reduced ability to smell C3HEX [MIM:615082]. When both variants are present in the same haplotype (allele 6M1-3*02), the response to C3HEX is abolished. African populations have a higher proportion of the C3HEX-nonresponsive haplotype than other populations. All haplotypes containing Gln-226 show low levels of surface expression.

Sequence variations from dbSNP and Humsavar for OR2J3 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs28757581 other 29,112,227(+) GAACC(A/G)CAGAG intron-variant, reference, missense
rs3749977 other 29,112,567(-) TAGCT(C/T)GGACG intron-variant, reference, missense
rs1000383614 -- 29,109,935(+) ATACT(A/G)TCTAA intron-variant, upstream-variant-2KB
rs1000811264 -- 29,111,622(+) CTTCT(A/G)TATTT intron-variant, upstream-variant-2KB
rs1002394973 -- 29,112,917(+) ATTCA(C/T)TCACT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for OR2J3 Gene

Variant ID Type Subtype PubMed ID
dgv10338n54 CNV gain 21841781
dgv1172e214 CNV gain 21293372
dgv1173e214 CNV loss 21293372
esv2763545 CNV loss 21179565
nsv1015796 CNV gain 25217958
nsv1032468 CNV loss 25217958
nsv1074388 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv428138 CNV gain+loss 18775914
nsv601216 CNV gain 21841781
nsv830623 CNV gain 17160897
nsv970098 CNV duplication 23825009

Variation tolerance for OR2J3 Gene

Residual Variation Intolerance Score: 84.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.07; 75.30% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR2J3 Gene

Human Gene Mutation Database (HGMD)
OR2J3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2J3

Disorders for OR2J3 Gene

Relevant External Links for OR2J3

Genetic Association Database (GAD)
OR2J3
Human Genome Epidemiology (HuGE) Navigator
OR2J3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR2J3

No disorders were found for OR2J3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2J3 Gene

Publications for OR2J3 Gene

  1. Genetic variation in the odorant receptor OR2J3 is associated with the ability to detect the 'grassy' smelling odor, cis-3-hexen-1-ol. (PMID: 22714804) McRae J.F. … Newcomb R.D. (Chem. Senses 2012) 3 4 64
  2. Hundreds of variants clustered in genomic loci and biological pathways affect human height. (PMID: 20881960) Lango Allen H. … Hirschhorn J.N. (Nature 2010) 3 46 64
  3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 46 64
  4. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  5. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64

Products for OR2J3 Gene

Sources for OR2J3 Gene

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