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olfactory receptor, family 2, subfamily J, member 1 (gene/pseudogene)(Previous names: olfactory receptor, family 2, subfamily J, member 1 pseudogene,...)
(Previous symbol: OR2J1P)
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Aliases
for OR2J1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Olfactory Receptor, Family 2, Subfamily J, Member 1 (Gene/Pseudogene)1 2 | | Olfactory Receptor, Family 2, Subfamily J, Member 1 Pseudogene1 | | OR2J1P1 2 3 | | 6M1-4P2 | | OR6-51 2 3 | | OR6-152 | | DJ80I19.21 | | Hs6M1-43 | | Hs6M1-43 | | Olfactory Receptor 6-53 | | Olfactory Receptor, Family 2, Subfamily J, Member 11 | | |
Export aliases for OR2J1 gene to outside databasesPrevious GC identifers: GC06U900570 GC06P029176 GC06P028876 GC06Pi29069 |
Summaries
for OR2J1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for OR2J1:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers theperception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors(GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with manyneurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction ofodorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to theolfactory receptor genes and proteins for this organism is independent of other organisms. (provided by RefSeq, Jul2008)
UniProtKB/Swiss-Prot: OR2J1_HUMAN, Q9GZK6Function: Odorant receptor (Potential)
Gene Wiki entry for OR2J1
|
Genomic Views
for OR2J1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for OR2J1
Other transcription factors
Search SABiosciences Chromatin IP Primers for OR2J1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR2J1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6p22.1 Ensembl cytogenetic band: 6p22.1 HGNC cytogenetic band: 6p22.2-p21.31OR2J1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P029069: view genomic region
(about GC identifiers)
Start:
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29,068,386 bp from pter |
End:
|
29,069,658 bp from pter |
Size:
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1,273 bases |
Orientation:
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plus strand |
6/7 alternative locations (see all 7):
| Chr6+,ALT_REF_LOCI_3 29,068,739-29,080,712 | Chr6+,ALT_REF_LOCI_6 29,068,729-29,105,245 | Chr6+,ALT_REF_LOCI_2 29,065,391-29,105,514 | | Chr6+,ALT_REF_LOCI_4 28,991,787-28,992,722 | Chr6+,ALT_REF_LOCI_5 28,983,688-28,984,623 | Chr6+,ALT_REF_LOCI_1 29,068,770-29,078,005 | |
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Proteins
for OR2J1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: OR2J1_HUMAN, Q9GZK6 (See
protein sequence)Recommended Name: Olfactory receptor 2J1 Size: 312 amino acids; 35454 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Secondary accessions: A2AAS1 B0V1T2 Q9GZK1Explore the universe of human proteins at neXtProt for OR2J1: NX_Q9GZK6
OR2J1 Protein expression data from MOPED and PaxDb: About this image 
ENSEMBL proteins: ENSP00000366376 Reactome Protein details: Q9GZK6
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005886 | plasma membrane |
TAS | -- | | GO:0016021 | integral to membrane |
IEA | -- |
OR2J1 for ontologies About GeneDecksing
OR2J1 Antibody Products:
Assay Products for OR2J1: |
Protein
Domains /
Families
for OR2J1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
OR2J1 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q9GZK6ProtoNet protein and cluster: Q9GZK6 1 Blocks protein family: IPB000725 Olfactory receptor signature
UniProtKB/Swiss-Prot: OR2J1_HUMAN, Q9GZK6Similarity: Belongs to the G-protein coupled receptor 1 family |
Function
for OR2J1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: OR2J1_HUMAN, Q9GZK6Function: Odorant receptor (Potential)
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004930 | G-protein coupled receptor activity |
IEA | -- | | GO:0004984 | olfactory receptor activity |
IEA | -- |
OR2J1 for ontologies About GeneDecksing
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Pathways & Interactions
for OR2J1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Unified GeneCards pathways About this table 
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Signaling by GPCR | | | 2 | Olfactory transduction | | | 3 | Class A/1 (Rhodopsin-like receptors) | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1  BioSystems Pathway for OR2J1
4 
Reactome Pathways for OR2J1
OR2J1 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OR2J1
|
Drugs & Compounds
for OR2J1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for OR2J1
Search CenterWatch for drugs/clinical trials and news about OR2J1
|
Transcripts
for OR2J1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000377171
GeneLoc Exon Structure
|
Expression
for OR2J1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| OR2J1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See OR2J1 Protein Expression from SPIRE MOPED and PaxDB SABiosciences Custom PCR Arrays for OR2J1
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat OR2J1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OR2J1 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OR2J1 |
Orthologs
for OR2J1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for OR2J1 (if available)
TreeFam Gene Tree for OR2J1 (if available) |
Paralogs
for OR2J1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for OR2J1 gene
- OR2J22 OR2W12 OR2B112 OR2H22 OR2B22 OR2B32 OR2H12 OR2C12
- OR2Y12 OR2G22 OR2B62 OR2J32 OR2W32 OR2G32 OR2C32 OR2G62
18/454 SIMAP similar genes for OR2J1 using alignment to 1 protein entry: OR2J1_HUMAN(see all similar genes):OR2J2 OR2J3 OR2J4P OR2W6P OLFR 42A OR2B2
OR2C3 6M1-16 OR2B6 OR2C1 OR2G3 OR2H1
OR2Y1 OR2B11 OR2B8P OR2G6 OR2W1 OR2W3
OR2J1 for paralogs About GeneDecksing
|
Genomic Variants
for OR2J1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
UniProtKB/Swiss-Prot: OR2J1_HUMAN, Q9GZK6Polymorphism: A stop codon in the gene coding for this protein at position Gln-194 is responsible for functionaldiversity thus producing a pseudogene. The stop codon is more frequent in non-Africans than in African-Americans
Human Gene Mutation Database (HGMD): OR2J1
| SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for OR2J1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
OR2J1 for disorders About GeneDecksing
1  disease for OR2J1: About MalaCardsneuronitis
Export disorders for OR2J1 gene to outside databases
|
Publications
for OR2J1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for OR2J1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with OR2J1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The human olfactory receptor gene family. (PubMed id 14983052)1 Malnic B.... Buck L.B. (2004)
- The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (2003)
- Different noses for different people. (PubMed id 12730696)2 Menashe I.... Gilad Y. (2003)
- Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)
|
External Searches for OR2J1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing OR2J1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing OR2J1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing OR2J1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for OR2J1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for OR2J1 gene:
Search GeneIP for patents involving OR2J1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for OR2J1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat OR2J1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing OR2J1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR2J1 | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat OR2J1 | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OR2J1 | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OR2J1 |
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| | | | Search Tocris compounds for OR2J1 |
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 | | | OR2J1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | |  |  |  | | | | Search ThermoFisher Antibodies for OR2J1 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat OR2J1 |
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