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Aliases for OR2C3 Gene

Aliases for OR2C3 Gene

  • Olfactory Receptor Family 2 Subfamily C Member 3 2 3 5
  • Olfactory Receptor, Family 2, Subfamily C, Member 4 2 3
  • Olfactory Receptor OR1-30 3 4
  • Olfactory Receptor 2C4 3 4
  • Olfactory Receptor 2C5 3 4
  • OR2C5P 3 4
  • OR2C4 3 4
  • Olfactory Receptor, Family 2, Subfamily C, Member 5 Pseudogene 3
  • Olfactory Receptor, Family 2, Subfamily C, Member 3 2
  • Olfactory Receptor 2C3 3
  • OST742 3

External Ids for OR2C3 Gene

Previous HGNC Symbols for OR2C3 Gene

  • OR2C4
  • OR2C5P

Previous GeneCards Identifiers for OR2C3 Gene

  • GC01M245551
  • GC01M242929
  • GC01M243790
  • GC01M244640
  • GC01M244564
  • GC01M244019
  • GC01M245760
  • GC01M247693

Summaries for OR2C3 Gene

Entrez Gene Summary for OR2C3 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR2C3 Gene

OR2C3 (Olfactory Receptor Family 2 Subfamily C Member 3) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR2G2.

UniProtKB/Swiss-Prot for OR2C3 Gene

  • Odorant receptor.

Gene Wiki entry for OR2C3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR2C3 Gene

Genomics for OR2C3 Gene

Regulatory Elements for OR2C3 Gene

Enhancers for OR2C3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F247557 0.3 FANTOM5 12.3 -23.9 -23934 0.3 CBX3 GABPA TRIM28 GCSAML OR2G2 OR2C3 GCSAML-AS1 OR2G3 ZNF496 PIR40872
GH01F247558 0.4 FANTOM5 12.3 -24.7 -24715 0.3 TRIM28 GCSAML OR2G2 OR2C3 GCSAML-AS1 OR2G3 ZNF496 ZNF124 PIR40872
GH01F247494 0.5 ENCODE 11.3 +38.8 38846 0.1 ATF3 IKZF1 SPI1 OR2B11 GCSAML-AS1 OR2C3 OR2G3 ZNF496 OR2W5 GCSAML
GH01F247530 0.5 Ensembl 0.8 +2.9 2939 0.6 RNF2 L3MBTL2 UBTF GTF2A2 ZFX MGA GCSAML-AS1 OR2C3
GH01F247548 0.8 Ensembl 0.4 -14.9 -14862 1.0 HDAC1 PKNOX1 TAL1 MAX GATA2 NCOR1 TRIM24 NFE2 HES1 BHLHE40 ZNF124 OR2C3 PIR40872
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around OR2C3 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR2C3 Gene

Chromosome:
1
Start:
247,530,132 bp from pter
End:
247,533,839 bp from pter
Size:
3,708 bases
Orientation:
Minus strand

Genomic View for OR2C3 Gene

Genes around OR2C3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2C3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2C3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR2C3 Gene

Proteins for OR2C3 Gene

  • Protein details for OR2C3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N628-OR2C3_HUMAN
    Recommended name:
    Olfactory receptor 2C3
    Protein Accession:
    Q8N628
    Secondary Accessions:
    • Q5JQS4
    • Q6IEZ1
    • Q8NGW7

    Protein attributes for OR2C3 Gene

    Size:
    320 amino acids
    Molecular mass:
    35376 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH30717.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=DAA04869.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for OR2C3 Gene

Post-translational modifications for OR2C3 Gene

Other Protein References for OR2C3 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR2C3 Gene

Domains & Families for OR2C3 Gene

Gene Families for OR2C3 Gene

Protein Domains for OR2C3 Gene

Suggested Antigen Peptide Sequences for OR2C3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N628

UniProtKB/Swiss-Prot:

OR2C3_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR2C3: view

Function for OR2C3 Gene

Molecular function for OR2C3 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR2C3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR2C3: view
genes like me logo Genes that share phenotypes with OR2C3: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for OR2C3 Gene

Localization for OR2C3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR2C3 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR2C3 Gene COMPARTMENTS Subcellular localization image for OR2C3 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR2C3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR2C3: view

Pathways & Interactions for OR2C3 Gene

genes like me logo Genes that share pathways with OR2C3: view

Pathways by source for OR2C3 Gene

Interacting Proteins for OR2C3 Gene

Gene Ontology (GO) - Biological Process for OR2C3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA,IBA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR2C3: view

No data available for SIGNOR curated interactions for OR2C3 Gene

Transcripts for OR2C3 Gene

mRNA/cDNA for OR2C3 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR2C3 Gene

Olfactory receptor, family 2, subfamily C, member 3:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR2C3 Gene

No ASD Table

Relevant External Links for OR2C3 Gene

GeneLoc Exon Structure for
OR2C3
ECgene alternative splicing isoforms for
OR2C3

Expression for OR2C3 Gene

mRNA expression in normal human tissues for OR2C3 Gene

mRNA differential expression in normal tissues according to GTEx for OR2C3 Gene

This gene is overexpressed in Testis (x36.9) and Prostate (x4.6).

NURSA nuclear receptor signaling pathways regulating expression of OR2C3 Gene:

OR2C3

SOURCE GeneReport for Unigene cluster for OR2C3 Gene:

Hs.730218
genes like me logo Genes that share expression patterns with OR2C3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OR2C3 Gene

Orthologs for OR2C3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR2C3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC469746 34
  • 98.75 (n)
OR2C3 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OR2C3 34
  • 85.63 (n)
cow
(Bos Taurus)
Mammalia OR2C3 34
  • 85.38 (n)
-- 35
  • 84 (a)
OneToMany
-- 35
  • 84 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia OR2C3 35
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Olfr1389 35
  • 57 (a)
ManyToMany
Species where no ortholog for OR2C3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR2C3 Gene

ENSEMBL:
Gene Tree for OR2C3 (if available)
TreeFam:
Gene Tree for OR2C3 (if available)

Paralogs for OR2C3 Gene

Paralogs for OR2C3 Gene

(450) SIMAP similar genes for OR2C3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR2C3: view

Variants for OR2C3 Gene

Sequence variations from dbSNP and Humsavar for OR2C3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10802521 -- 247,532,745(+) GGCAC(A/G)TACTA intron-variant, upstream-variant-2KB
rs10925072 -- 247,529,649(+) tttac(A/G)tatca intron-variant
rs111376775 -- 247,533,265(+) CAGAA(A/G)ATGAT intron-variant
rs112238805 -- 247,533,425(+) GCCAG(C/G)CATAA intron-variant
rs112409843 -- 247,532,250(+) TGGTC(C/T)CCAGA intron-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for OR2C3 Gene

Variant ID Type Subtype PubMed ID
esv33129 CNV gain+loss 17666407
esv3589518 CNV loss 21293372

Variation tolerance for OR2C3 Gene

Residual Variation Intolerance Score: 88.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.96; 68.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR2C3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2C3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR2C3 Gene

Disorders for OR2C3 Gene

Relevant External Links for OR2C3

Genetic Association Database (GAD)
OR2C3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR2C3

No disorders were found for OR2C3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2C3 Gene

Publications for OR2C3 Gene

  1. Germline genomic variants associated with childhood acute lymphoblastic leukemia. (PMID: 19684603) Trevino L.R. … Relling M.V. (Nat. Genet. 2009) 3 46 64
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  3. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 64

Products for OR2C3 Gene

Sources for OR2C3 Gene

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