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Aliases for OR2AT4 Gene

Aliases for OR2AT4 Gene

  • Olfactory Receptor Family 2 Subfamily AT Member 4 2 3 5
  • Olfactory Receptor, Family 2, Subfamily AT, Member 4 2
  • Olfactory Receptor OR11-265 Pseudogene 3
  • Olfactory Receptor OR11-265 4
  • Olfactory Receptor 2AT4 3
  • OR11-265 3

External Ids for OR2AT4 Gene

Previous GeneCards Identifiers for OR2AT4 Gene

  • GC00U903081
  • GC11M074527
  • GC11M074477
  • GC11M074799

Summaries for OR2AT4 Gene

Entrez Gene Summary for OR2AT4 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR2AT4 Gene

OR2AT4 (Olfactory Receptor Family 2 Subfamily AT Member 4) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and transmembrane signaling receptor activity.

UniProtKB/Swiss-Prot for OR2AT4 Gene

  • Odorant receptor.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR2AT4 Gene

Genomics for OR2AT4 Gene

Regulatory Elements for OR2AT4 Gene

Enhancers for OR2AT4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F075029 1.7 FANTOM5 Ensembl ENCODE 11.2 +58.5 58549 3.0 HDGF PKNOX1 ATF1 CREB3L1 ARID4B ZNF2 CBX5 GATA2 ZNF143 FOS XRRA1 OR2AT4 SLCO2B1 ARRB1 PIR37723 PIR50270
GH11F075022 1.3 Ensembl ENCODE 10.8 +66.4 66380 2.1 ATF1 MLX ARID4B DMAP1 BRCA1 ZNF2 ZNF48 SLC30A9 ZNF143 DEK SPCS2 XRRA1 OR2AT4 SLCO2B1 ENSG00000254429 NEU3 PIR50270 PIR37723
GH11F075044 0.6 ENCODE 11.2 +44.0 43986 1.6 FOXA3 ZBTB33 BCL6 ZNF644 TEAD3 XRRA1 SLCO2B1 OR2AT4 PIR37723 OR2AT2P
GH11F075154 1.6 FANTOM5 Ensembl ENCODE 1.4 -70.6 -70566 12.0 ATF1 ARNT MLX ARID4B DMAP1 ZNF48 YY1 CBX5 ZNF143 SP5 RNF169 ENSG00000206913 P4HA3 SLCO2B1 ENSG00000255395 XRRA1 OR2AT4 ZDHHC20P3
GH11F074866 0.6 FANTOM5 1.4 +222.7 222705 0.1 POLR2A THRAP3 ZNF512 MNT TRIM28 SETDB1 RNF169 ENSG00000206913 XRRA1 OR2AT4 RPL31P46 RN7SL239P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR2AT4 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR2AT4 Gene

Chromosome:
11
Start:
75,088,713 bp from pter
End:
75,089,754 bp from pter
Size:
1,042 bases
Orientation:
Minus strand

Genomic View for OR2AT4 Gene

Genes around OR2AT4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2AT4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2AT4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR2AT4 Gene

Proteins for OR2AT4 Gene

  • Protein details for OR2AT4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NND4-O2AT4_HUMAN
    Recommended name:
    Olfactory receptor 2AT4
    Protein Accession:
    A6NND4
    Secondary Accessions:
    • B9EGZ8

    Protein attributes for OR2AT4 Gene

    Size:
    320 amino acids
    Molecular mass:
    35503 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR2AT4 Gene

Post-translational modifications for OR2AT4 Gene

  • Glycosylation at Asn 7
  • Modification sites at PhosphoSitePlus

Other Protein References for OR2AT4 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR2AT4 Gene

Domains & Families for OR2AT4 Gene

Gene Families for OR2AT4 Gene

Protein Domains for OR2AT4 Gene

Suggested Antigen Peptide Sequences for OR2AT4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NND4

UniProtKB/Swiss-Prot:

O2AT4_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR2AT4: view

Function for OR2AT4 Gene

Molecular function for OR2AT4 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR2AT4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004888 transmembrane signaling receptor activity IBA --
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR2AT4: view
genes like me logo Genes that share phenotypes with OR2AT4: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR2AT4 Gene

Localization for OR2AT4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR2AT4 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR2AT4 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR2AT4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA,TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA,IBA --
genes like me logo Genes that share ontologies with OR2AT4: view

Pathways & Interactions for OR2AT4 Gene

genes like me logo Genes that share pathways with OR2AT4: view

Pathways by source for OR2AT4 Gene

Gene Ontology (GO) - Biological Process for OR2AT4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA,IBA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050907 detection of chemical stimulus involved in sensory perception IBA --
genes like me logo Genes that share ontologies with OR2AT4: view

No data available for SIGNOR curated interactions for OR2AT4 Gene

Transcripts for OR2AT4 Gene

mRNA/cDNA for OR2AT4 Gene

(5) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR2AT4 Gene

No ASD Table

Relevant External Links for OR2AT4 Gene

GeneLoc Exon Structure for
OR2AT4
ECgene alternative splicing isoforms for
OR2AT4

Expression for OR2AT4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR2AT4 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for OR2AT4 Gene



NURSA nuclear receptor signaling pathways regulating expression of OR2AT4 Gene:

OR2AT4

SOURCE GeneReport for Unigene cluster for OR2AT4 Gene:

Hs.554515
genes like me logo Genes that share expression patterns with OR2AT4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OR2AT4 Gene

Orthologs for OR2AT4 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR2AT4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC748690 34
  • 99.06 (n)
OR2AT4 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LOC609254 34
  • 90.83 (n)
OR2AT4 35
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia OR2AT4 34 35
  • 90.18 (n)
rat
(Rattus norvegicus)
Mammalia Olr35 34
  • 85.48 (n)
mouse
(Mus musculus)
Mammalia Or2at4 55 Olfr520 34 16 35
  • 84.95 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 75 (a)
OneToMany
-- 35
  • 71 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
-- 35
  • 62 (a)
OneToMany
-- 35
  • 58 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 42 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii or103-1 35
  • 35 (a)
ManyToMany
or103-2 35
  • 33 (a)
ManyToMany
or105-1 35
  • 32 (a)
ManyToMany
or102-2 35
  • 31 (a)
ManyToMany
or103-4 35
  • 31 (a)
ManyToMany
or104-2 35
  • 31 (a)
ManyToMany
or103-3 35
  • 30 (a)
ManyToMany
or111-6 35
  • 30 (a)
ManyToMany
or102-1 35
  • 29 (a)
ManyToMany
or102-5 35
  • 29 (a)
ManyToMany
or111-7 35
  • 29 (a)
ManyToMany
or102-3 35
  • 27 (a)
ManyToMany
or102-4 35
  • 27 (a)
ManyToMany
or111-4 35
  • 27 (a)
ManyToMany
or111-5 35
  • 27 (a)
ManyToMany
or111-9 35
  • 27 (a)
ManyToMany
or109-1 35
  • 26 (a)
ManyToMany
or109-13 35
  • 26 (a)
ManyToMany
or111-10 35
  • 26 (a)
ManyToMany
or111-11 35
  • 26 (a)
ManyToMany
or111-3 35
  • 26 (a)
ManyToMany
or106-10 35
  • 25 (a)
ManyToMany
or107-1 35
  • 25 (a)
ManyToMany
or109-2 35
  • 25 (a)
ManyToMany
or111-1 35
  • 25 (a)
ManyToMany
or111-2 35
  • 25 (a)
ManyToMany
BX088524.1 35
  • 24 (a)
ManyToMany
or108-1 35
  • 24 (a)
ManyToMany
or109-11 35
  • 24 (a)
ManyToMany
or109-5 35
  • 24 (a)
ManyToMany
or111-8 35
  • 24 (a)
ManyToMany
or108-3 35
  • 23 (a)
ManyToMany
or109-4 35
  • 23 (a)
ManyToMany
or110-1 35
  • 23 (a)
ManyToMany
or110-2 35
  • 23 (a)
ManyToMany
or106-1 35
  • 22 (a)
ManyToMany
Species where no ortholog for OR2AT4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for OR2AT4 Gene

ENSEMBL:
Gene Tree for OR2AT4 (if available)
TreeFam:
Gene Tree for OR2AT4 (if available)

Paralogs for OR2AT4 Gene

(458) SIMAP similar genes for OR2AT4 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for OR2AT4 Gene

genes like me logo Genes that share paralogs with OR2AT4: view

No data available for Paralogs for OR2AT4 Gene

Variants for OR2AT4 Gene

Sequence variations from dbSNP and Humsavar for OR2AT4 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs111363054 -- 75,095,294(+) CCTTG(C/T)TTCTC intron-variant
rs111504478 -- 75,093,979(+) CATCA(G/T)GCCCA intron-variant
rs111521056 -- 75,088,657(+) TAAAA(-/A)TTAAC downstream-variant-500B
rs111627357 -- 75,092,510(+) TGATG(C/T)AGCTA intron-variant
rs111701432 -- 75,095,148(+) AATAG(C/T)GTCTT intron-variant

Variation tolerance for OR2AT4 Gene

Residual Variation Intolerance Score: 81.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.73; 46.69% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR2AT4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2AT4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OR2AT4 Gene

Disorders for OR2AT4 Gene

Relevant External Links for OR2AT4

Genetic Association Database (GAD)
OR2AT4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR2AT4

No disorders were found for OR2AT4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2AT4 Gene

Publications for OR2AT4 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  2. A synthetic sandalwood odorant induces wound-healing processes in human keratinocytes via the olfactory receptor OR2AT4. (PMID: 24999593) Busse D. … Benecke H. (J. Invest. Dermatol. 2014) 3 64
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4 64
  4. A genome-wide association study identifies IL23R as an inflammatory bowel disease gene. (PMID: 17068223) Duerr R.H. … Cho J.H. (Science 2006) 46 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for OR2AT4 Gene

Sources for OR2AT4 Gene

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