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Aliases for OR2A1-AS1 Gene

Subcategory (RNA class) for OR2A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OR2A1-AS1 Gene

  • OR2A1 Antisense RNA 1 2 3 5

External Ids for OR2A1-AS1 Gene

Previous GeneCards Identifiers for OR2A1-AS1 Gene

  • GC07U903630
  • GC07P143898
  • GC07M144251

Summaries for OR2A1-AS1 Gene

GeneCards Summary for OR2A1-AS1 Gene

OR2A1-AS1 (OR2A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR2A1-AS1 Gene

Genomics for OR2A1-AS1 Gene

Regulatory Elements for OR2A1-AS1 Gene

Enhancers for OR2A1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G144383 1 Ensembl ENCODE 8 -29.2 -29225 3.9 ZNF140 KLF17 CEBPG FOSL1 ZNF121 HIC1 EED CREM MAZ L3MBTL2 ARHGEF34P OR2A1-AS1 OR2A20P LOC154761 NOBOX
GH07G144415 0.4 ENCODE 7.5 -60.2 -60249 1.4 U2AF1 OR2A1-AS1 ARHGEF34P NOBOX ENSG00000242978
GH07G144357 0.4 Ensembl 0.7 -1.7 -1720 0.6 CEBPG OR2A1-AS1 NOBOX
GH07G144391 0.9 Ensembl ENCODE 0.3 -35.8 -35835 0.4 CTCF ZNF654 ZNF362 FOXA2 FOXA3 TRIM22 REST RAD21 FOXA1 JUND ARHGEF34P OR2A20P NOBOX OR2A1-AS1
GH07G144407 0.4 ENCODE 0.2 -51.8 -51784 1.8 CTBP1 RFX1 OR2A9P NOBOX OR2A1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR2A1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for OR2A1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000219469 418 1401 CTBP1 FOXP1

Genomic Location for OR2A1-AS1 Gene

Chromosome:
7
Start:
144,238,573 bp from pter
End:
144,356,181 bp from pter
Size:
117,609 bases
Orientation:
Minus strand

Genomic View for OR2A1-AS1 Gene

Genes around OR2A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR2A1-AS1 Gene

Proteins for OR2A1-AS1 Gene

Post-translational modifications for OR2A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OR2A1-AS1 Gene

Domains & Families for OR2A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OR2A1-AS1 Gene

Function for OR2A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR2A1-AS1 Gene

Localization for OR2A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OR2A1-AS1 Gene

Pathways & Interactions for OR2A1-AS1 Gene

SuperPathways for OR2A1-AS1 Gene

No Data Available

Interacting Proteins for OR2A1-AS1 Gene

Gene Ontology (GO) - Biological Process for OR2A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OR2A1-AS1 Gene

Drugs & Compounds for OR2A1-AS1 Gene

No Compound Related Data Available

Transcripts for OR2A1-AS1 Gene

mRNA/cDNA for OR2A1-AS1 Gene

(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR2A1-AS1 Gene

No ASD Table

Relevant External Links for OR2A1-AS1 Gene

GeneLoc Exon Structure for
OR2A1-AS1
ECgene alternative splicing isoforms for
OR2A1-AS1

Expression for OR2A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR2A1-AS1 Gene

genes like me logo Genes that share expression patterns with OR2A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR2A1-AS1 Gene

Orthologs for OR2A1-AS1 Gene

Evolution for OR2A1-AS1 Gene

ENSEMBL:
Gene Tree for OR2A1-AS1 (if available)
TreeFam:
Gene Tree for OR2A1-AS1 (if available)

No data available for Orthologs for OR2A1-AS1 Gene

Paralogs for OR2A1-AS1 Gene

No data available for Paralogs for OR2A1-AS1 Gene

Variants for OR2A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OR2A1-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000025032 -- 144,256,092(+) CAAGC(G/T)CAAGG intron-variant
rs1000269092 -- 144,256,505(+) CTCCA(A/G)TGTCT intron-variant
rs1000371935 -- 144,317,847(+) TATGT(A/G)CAGCT intron-variant, upstream-variant-2KB
rs1000488015 -- 144,321,292(+) CGGCA(C/G)ATGCT intron-variant
rs1000656068 -- 144,247,556(+) ACTCA(A/C)AGTGT intron-variant

Relevant External Links for OR2A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OR2A1-AS1 Gene

Disorders for OR2A1-AS1 Gene

Relevant External Links for OR2A1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR2A1-AS1

No disorders were found for OR2A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2A1-AS1 Gene

Publications for OR2A1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for OR2A1-AS1 Gene

Sources for OR2A1-AS1 Gene

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