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Aliases for OR2A1-AS1 Gene

Subcategory (RNA class) for OR2A1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OR2A1-AS1 Gene

  • OR2A1 Antisense RNA 1 2 3 5

External Ids for OR2A1-AS1 Gene

Previous GeneCards Identifiers for OR2A1-AS1 Gene

  • GC07U903630
  • GC07P143898
  • GC07M144251

Summaries for OR2A1-AS1 Gene

GeneCards Summary for OR2A1-AS1 Gene

OR2A1-AS1 (OR2A1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OR2A1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR2A1-AS1 Gene

Genomics for OR2A1-AS1 Gene

GeneHancer (GH) Regulatory Elements for OR2A1-AS1 Gene

Promoters and enhancers for OR2A1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I144354 Promoter 1.2 EPDnew Ensembl 550.8 +0.9 880 1.4 ZNF335 FOXP1 ARHGEF5 ENSG00000284644 OR2A1-AS1 ARHGEF35
GH07I144357 Enhancer 0.2 Ensembl 550.8 -1.7 -1720 0.6 OR2A1-AS1 ARHGEF5 NOBOX
GH07I144383 Enhancer 0.9 Ensembl ENCODE 8 -29.2 -29225 3.9 ZNF140 KLF17 CEBPG BATF HIC1 ZNF121 FOSL1 POLR2A FOSL2 RUNX3 ARHGEF34P OR2A1-AS1 OR2A20P LOC154761 NOBOX
GH07I144415 Enhancer 0.2 ENCODE 7.5 -60.2 -60248 1.4 OR2A1-AS1 ARHGEF34P NOBOX PPIAP83
GH07I144352 Enhancer 0.4 Ensembl 0.8 +3.5 3468 0.6 ZNF316 MAFG ARHGEF34P ARHGEF5 ENSG00000284644 OR2A1-AS1 OR2A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OR2A1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OR2A1-AS1 Gene

Genomic Locations for OR2A1-AS1 Gene
chr7:144,238,573-144,356,181
(GRCh38/hg38)
Size:
117,609 bases
Orientation:
Minus strand
chr7:143,891,951-143,977,640
(GRCh37/hg19)

Genomic View for OR2A1-AS1 Gene

Genes around OR2A1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2A1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2A1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR2A1-AS1 Gene

Proteins for OR2A1-AS1 Gene

Post-translational modifications for OR2A1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OR2A1-AS1 Gene

Domains & Families for OR2A1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OR2A1-AS1 Gene

Function for OR2A1-AS1 Gene

Phenotypes From GWAS Catalog for OR2A1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR2A1-AS1 Gene

Localization for OR2A1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OR2A1-AS1 Gene

Pathways & Interactions for OR2A1-AS1 Gene

SuperPathways for OR2A1-AS1 Gene

No Data Available

Interacting Proteins for OR2A1-AS1 Gene

Gene Ontology (GO) - Biological Process for OR2A1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OR2A1-AS1 Gene

Drugs & Compounds for OR2A1-AS1 Gene

No Compound Related Data Available

Transcripts for OR2A1-AS1 Gene

mRNA/cDNA for OR2A1-AS1 Gene

(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR2A1-AS1 Gene

No ASD Table

Relevant External Links for OR2A1-AS1 Gene

GeneLoc Exon Structure for
OR2A1-AS1
ECgene alternative splicing isoforms for
OR2A1-AS1

Expression for OR2A1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR2A1-AS1 Gene

genes like me logo Genes that share expression patterns with OR2A1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR2A1-AS1 Gene

Orthologs for OR2A1-AS1 Gene

Evolution for OR2A1-AS1 Gene

ENSEMBL:
Gene Tree for OR2A1-AS1 (if available)
TreeFam:
Gene Tree for OR2A1-AS1 (if available)

No data available for Orthologs for OR2A1-AS1 Gene

Paralogs for OR2A1-AS1 Gene

No data available for Paralogs for OR2A1-AS1 Gene

Variants for OR2A1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OR2A1-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000025032 -- 144,256,092(-) T/G intron_variant
rs1000269092 -- 144,256,505(-) A/G intron_variant
rs1000371935 -- 144,317,847(-) G/A intron_variant
rs1000488015 -- 144,321,292(-) G/C intron_variant
rs1000656068 -- 144,247,556(-) A/C intron_variant

Additional Variant Information for OR2A1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2A1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OR2A1-AS1 Gene

Disorders for OR2A1-AS1 Gene

Additional Disease Information for OR2A1-AS1

No disorders were found for OR2A1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2A1-AS1 Gene

Publications for OR2A1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for OR2A1-AS1 Gene

Sources for OR2A1-AS1 Gene

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