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Aliases for OR2A1 Gene

Aliases for OR2A1 Gene

  • Olfactory Receptor Family 2 Subfamily A Member 1 2 3 5
  • Olfactory Receptor, Family 2, Subfamily A, Member 1 2
  • Olfactory Receptor OR7-16 4
  • Olfactory Receptor OR7-19 4
  • OR2A1 OR2A42 4

External Ids for OR2A1 Gene

Previous GeneCards Identifiers for OR2A1 Gene

  • GC07U990174
  • GC07P143407
  • GC07P143452
  • GC07P143646
  • GC07P144015

Summaries for OR2A1 Gene

Entrez Gene Summary for OR2A1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR2A1 Gene

OR2A1 (Olfactory Receptor Family 2 Subfamily A Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR2A42.

UniProtKB/Swiss-Prot for OR2A1 Gene

  • Odorant receptor.

Gene Wiki entry for OR2A1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR2A1 Gene

Genomics for OR2A1 Gene

Regulatory Elements for OR2A1 Gene

Enhancers for OR2A1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F144833 0.9 ENCODE 10.8 +523.6 523585 3.2 HDGF ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 TPK1 CTAGE8 LOC154761 OR2A1 GC07M144690
GH07F143378 1.5 FANTOM5 Ensembl ENCODE 10.1 -925.8 -925752 15.9 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A YBX1 ZNF2 YY1 ZYX EPHA1-AS1 EPHA1 CLCN1 HINT1P1 OR2A1 FAM131B LOC100507507 TAS2R60 ARHGEF35
GH07F144349 0.2 Ensembl 0.3 +37.9 37870 0.4 ARHGEF5 OR2A1
GH07F144348 0.2 Ensembl 0.3 +37.0 36955 0.6 ARHGEF5 OR2A1
GH07F144343 0.6 Ensembl 0.3 +31.2 31155 0.2 ARHGEF5 OR2A1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around OR2A1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR2A1 Gene

Chromosome:
7
Start:
144,311,946 bp from pter
End:
144,321,105 bp from pter
Size:
9,160 bases
Orientation:
Plus strand

Genomic View for OR2A1 Gene

Genes around OR2A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR2A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR2A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR2A1 Gene

Proteins for OR2A1 Gene

  • Protein details for OR2A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGT9-OR2A1_HUMAN
    Recommended name:
    Olfactory receptor 2A1/2A42
    Protein Accession:
    Q8NGT9
    Secondary Accessions:
    • Q6IF44
    • Q96R46

    Protein attributes for OR2A1 Gene

    Size:
    310 amino acids
    Molecular mass:
    34714 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC05915.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for OR2A1 Gene

Post-translational modifications for OR2A1 Gene

  • Glycosylation at Asn 4
  • Modification sites at PhosphoSitePlus

Other Protein References for OR2A1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR2A1 Gene

Domains & Families for OR2A1 Gene

Gene Families for OR2A1 Gene

Protein Domains for OR2A1 Gene

Graphical View of Domain Structure for InterPro Entry

Q8NGT9

UniProtKB/Swiss-Prot:

OR2A1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR2A1: view

No data available for Suggested Antigen Peptide Sequences for OR2A1 Gene

Function for OR2A1 Gene

Molecular function for OR2A1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR2A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR2A1: view

Phenotypes for OR2A1 Gene

GenomeRNAi human phenotypes for OR2A1:
genes like me logo Genes that share phenotypes with OR2A1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR2A1 Gene

Localization for OR2A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR2A1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR2A1 Gene COMPARTMENTS Subcellular localization image for OR2A1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR2A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR2A1: view

Pathways & Interactions for OR2A1 Gene

genes like me logo Genes that share pathways with OR2A1: view

Pathways by source for OR2A1 Gene

Interacting Proteins for OR2A1 Gene

STRING Interaction Network Preview (showing 3 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000386175%0d%0a9606.ENSP00000317578%0d%0a9606.ENSP00000269260%0d%0a9606.ENSP00000334051%0d%0a
Selected Interacting proteins: ENSP00000386175 for OR2A1 Gene via STRING

Gene Ontology (GO) - Biological Process for OR2A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA,IBA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR2A1: view

No data available for SIGNOR curated interactions for OR2A1 Gene

Transcripts for OR2A1 Gene

mRNA/cDNA for OR2A1 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR2A1 Gene

Olfactory receptor, family 2, subfamily A, member 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR2A1 Gene

No ASD Table

Relevant External Links for OR2A1 Gene

GeneLoc Exon Structure for
OR2A1
ECgene alternative splicing isoforms for
OR2A1

Expression for OR2A1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR2A1 Gene

mRNA differential expression in normal tissues according to GTEx for OR2A1 Gene

This gene is overexpressed in Thyroid (x6.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for OR2A1 Gene



Protein tissue co-expression partners for OR2A1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of OR2A1 Gene:

OR2A1

SOURCE GeneReport for Unigene cluster for OR2A1 Gene:

Hs.528398
genes like me logo Genes that share expression patterns with OR2A1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for OR2A1 Gene

Orthologs for OR2A1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR2A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC744895 34
  • 98.28 (n)
-- 35
  • 97 (a)
OneToMany
dog
(Canis familiaris)
Mammalia OR08A11 34 35
  • 85.59 (n)
-- 35
  • 80 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia LOC504233 34
  • 84.25 (n)
-- 35
  • 47 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Or2a51 55 Olfr435 34 35
  • 79.46 (n)
Olfr434 35
  • 77 (a)
ManyToMany
Olfr47 35
  • 76 (a)
ManyToMany
Or13p10 55 Olfr62
  • chr4:118,665,333-118,666,463
Or13p4 55 Olfr1342
  • chr4:118,689,506-118,690,450
rat
(Rattus norvegicus)
Mammalia Olr819 34
  • 77.63 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 59 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 47 (a)
ManyToMany
Species where no ortholog for OR2A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR2A1 Gene

ENSEMBL:
Gene Tree for OR2A1 (if available)
TreeFam:
Gene Tree for OR2A1 (if available)

Paralogs for OR2A1 Gene

Paralogs for OR2A1 Gene

(460) SIMAP similar genes for OR2A1 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with OR2A1: view

Variants for OR2A1 Gene

Sequence variations from dbSNP and Humsavar for OR2A1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs113693770 -- 144,316,713(+) TACCA(C/G)ATTTT intron-variant, upstream-variant-2KB
rs138095568 -- 144,319,414(+) AAAAA(A/T)ACAGC intron-variant, downstream-variant-500B
rs139494653 -- 144,316,129(+) TTTTT(A/T)AATAG intron-variant, upstream-variant-2KB
rs141200234 -- 144,319,415(+) AAAAT(A/C)CAGCC intron-variant, downstream-variant-500B
rs142335126 -- 144,318,526(+) GTCAT(C/G)ATGAC intron-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for OR2A1 Gene

Variant ID Type Subtype PubMed ID
dgv11668n54 CNV gain 21841781
dgv11669n54 CNV loss 21841781
dgv11679n54 CNV loss 21841781
dgv11684n54 CNV loss 21841781
dgv11685n54 CNV loss 21841781
dgv11686n54 CNV loss 21841781
dgv152e203 CNV gain+loss 21179565
dgv24n31 CNV gain 19718026
dgv253n111 CNV duplication 26073780
dgv254n111 CNV duplication 26073780
dgv255n111 CNV deletion 26073780
dgv3972e59 CNV duplication 20981092
dgv3976e59 CNV duplication 20981092
dgv6726n100 CNV gain 25217958
dgv6727n100 CNV loss 25217958
dgv6728n100 CNV gain+loss 25217958
dgv6729n100 CNV gain 25217958
dgv6730n100 CNV loss 25217958
dgv6731n100 CNV gain+loss 25217958
dgv6732n100 CNV gain+loss 25217958
dgv6733n100 CNV gain+loss 25217958
dgv6734n100 CNV gain+loss 25217958
dgv6735n100 CNV gain 25217958
dgv6736n100 CNV gain 25217958
dgv6737n100 CNV gain 25217958
dgv6738n100 CNV gain+loss 25217958
dgv6739n100 CNV gain+loss 25217958
dgv6740n100 CNV loss 25217958
dgv6741n100 CNV loss 25217958
dgv6742n100 CNV loss 25217958
dgv6743n100 CNV gain+loss 25217958
dgv6744n100 CNV loss 25217958
dgv6745n100 CNV loss 25217958
esv1003295 OTHER inversion 20482838
esv1682998 OTHER inversion 17803354
esv24292 CNV gain+loss 19812545
esv2759570 CNV gain+loss 17122850
esv33253 CNV gain 17666407
esv3380478 CNV duplication 20981092
esv3392001 CNV duplication 20981092
esv3432947 CNV duplication 20981092
esv3433980 CNV duplication 20981092
esv3584873 CNV loss 24956385
esv3891225 CNV gain 25118596
nsv1016831 CNV gain 25217958
nsv1141559 CNV duplication 24896259
nsv1148453 CNV duplication 26484159
nsv1149323 CNV duplication 26484159
nsv428188 CNV gain+loss 18775914
nsv433394 CNV gain 18776910
nsv469769 CNV gain+loss 16826518
nsv471455 CNV gain 19718026
nsv471646 CNV gain+loss 15918152
nsv508489 CNV deletion 20534489
nsv515040 CNV gain 21397061
nsv608699 CNV gain 21841781
nsv608764 CNV loss 21841781
nsv608831 CNV loss 21841781
nsv608857 CNV gain 21841781
nsv7411 OTHER inversion 18451855
nsv819701 CNV insertion 19587683
nsv821609 CNV duplication 20802225
nsv8227 CNV gain+loss 18304495
nsv824360 CNV gain 20364138
nsv831175 CNV loss 17160897
nsv970597 CNV duplication 23825009
nsv970599 CNV duplication 23825009
nsv981600 CNV duplication 23825009

Variation tolerance for OR2A1 Gene

Gene Damage Index Score: 3.01; 50.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR2A1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR2A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR2A1 Gene

Disorders for OR2A1 Gene

Relevant External Links for OR2A1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR2A1

No disorders were found for OR2A1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR2A1 Gene

Publications for OR2A1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4 64
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3 64

Products for OR2A1 Gene

Sources for OR2A1 Gene

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