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Aliases for OR1Q1 Gene

Aliases for OR1Q1 Gene

  • Olfactory Receptor, Family 1, Subfamily Q, Member 1 2 3
  • Olfactory Receptor TPCR106 3 4
  • Olfactory Receptor OR9-25 3 4
  • Olfactory Receptor 1Q2 3 4
  • Olfactory Receptor 1Q3 3 4
  • Olfactory Receptor 9-A 3 4
  • OST226 3 4
  • OR1Q2 3 4
  • OR1Q3 3 4
  • OR9-A 3 4
  • Olfactory Receptor, Family 1, Subfamily Q, Member 2 3
  • Olfactory Receptor, Family 1, Subfamily Q, Member 3 3
  • Olfactory Receptor 1Q1 3
  • OST226OR9-A 3
  • HSTPCR106 3
  • TPCR106 3
  • OR9-25 3

External Ids for OR1Q1 Gene

Previous HGNC Symbols for OR1Q1 Gene

  • OR1Q2
  • OR1Q3

Previous GeneCards Identifiers for OR1Q1 Gene

  • GC09U990112
  • GC09M117023
  • GC09P118830
  • GC09P120753
  • GC09P120749
  • GC09P122456
  • GC09P124416
  • GC09P125376

Summaries for OR1Q1 Gene

Entrez Gene Summary for OR1Q1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR1Q1 Gene

OR1Q1 (Olfactory Receptor, Family 1, Subfamily Q, Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR1D5.

UniProtKB/Swiss-Prot for OR1Q1 Gene

  • Odorant receptor.

Gene Wiki entry for OR1Q1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR1Q1 Gene

Genomics for OR1Q1 Gene

Regulatory Elements for OR1Q1 Gene

Genomic Location for OR1Q1 Gene

Start:
122,614,738 bp from pter
End:
122,615,682 bp from pter
Size:
945 bases
Orientation:
Plus strand

Genomic View for OR1Q1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR1Q1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR1Q1 Gene

Proteins for OR1Q1 Gene

  • Protein details for OR1Q1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15612-OR1Q1_HUMAN
    Recommended name:
    Olfactory receptor 1Q1
    Protein Accession:
    Q15612
    Secondary Accessions:
    • Q6IFN4
    • Q8NGR7
    • Q96R82

    Protein attributes for OR1Q1 Gene

    Size:
    314 amino acids
    Molecular mass:
    35598 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR1Q1 Gene

Proteomics data for OR1Q1 Gene at MOPED

Post-translational modifications for OR1Q1 Gene

  • Glycosylation at Asn5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR1Q1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR1Q1 Gene

Domains for OR1Q1 Gene

Gene Families for OR1Q1 Gene

HGNC:
  • OR1 :GPCR / Class A : Olfactory receptors

Protein Domains for OR1Q1 Gene

Suggested Antigen Peptide Sequences for OR1Q1 Gene

Graphical View of Domain Structure for InterPro Entry

Q15612

UniProtKB/Swiss-Prot:

OR1Q1_HUMAN :
  • Q15612
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR1Q1: view

Function for OR1Q1 Gene

Molecular function for OR1Q1 Gene

UniProtKB/Swiss-Prot Function: Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR1Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity NAS 9119360
genes like me logo Genes that share ontologies with OR1Q1: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR1Q1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OR1Q1 Gene

Localization for OR1Q1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR1Q1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR1Q1 Gene COMPARTMENTS Subcellular localization image for OR1Q1 gene
Compartment Confidence
plasma membrane 5
cytosol 3

Gene Ontology (GO) - Cellular Components for OR1Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane NAS 9119360
genes like me logo Genes that share ontologies with OR1Q1: view

Pathways for OR1Q1 Gene

genes like me logo Genes that share pathways with OR1Q1: view

Pathways by source for OR1Q1 Gene

1 KEGG pathway for OR1Q1 Gene

Interacting Proteins for OR1Q1 Gene

Gene Ontology (GO) - Biological Process for OR1Q1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell NAS 9119360
GO:0050911 detection of chemical stimulus involved in sensory perception of smell NAS 9119360
genes like me logo Genes that share ontologies with OR1Q1: view

Transcripts for OR1Q1 Gene

mRNA/cDNA for OR1Q1 Gene

(2) REFSEQ mRNAs :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR1Q1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for OR1Q1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR1Q1 Gene

No ASD Table

Relevant External Links for OR1Q1 Gene

GeneLoc Exon Structure for
OR1Q1
ECgene alternative splicing isoforms for
OR1Q1

Expression for OR1Q1 Gene

mRNA expression in normal human tissues for OR1Q1 Gene

mRNA differential expression in normal tissues according to GTEx for OR1Q1 Gene

This gene is overexpressed in Bladder (4.2).

SOURCE GeneReport for Unigene cluster for OR1Q1 Gene Hs.684864

genes like me logo Genes that share expressions with OR1Q1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for OR1Q1 Gene

Orthologs for OR1Q1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OR1Q1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC736157 35
  • 99.68 (n)
  • 99.36 (a)
OR1Q1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia OR1Q1 35
  • 84.29 (n)
  • 79.62 (a)
OR1Q1 36
  • 80 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 36
  • 40 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Olfr357 35
  • 82.25 (n)
  • 81.49 (a)
Olfr357 16
Olfr357 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia OPOR54 36
  • 68 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Olr420 35
  • 80.74 (n)
  • 77.92 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 44 (a)
ManyToMany
-- 36
  • 45 (a)
ManyToMany
-- 36
  • 47 (a)
ManyToMany
-- 36
  • 49 (a)
ManyToMany
Species with no ortholog for OR1Q1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR1Q1 Gene

ENSEMBL:
Gene Tree for OR1Q1 (if available)
TreeFam:
Gene Tree for OR1Q1 (if available)

Paralogs for OR1Q1 Gene

Paralogs for OR1Q1 Gene

Selected SIMAP similar genes for OR1Q1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with OR1Q1: view

Variants for OR1Q1 Gene

Sequence variations from dbSNP and Humsavar for OR1Q1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs727913 - 122,615,455(+) TTTCT(A/G)CCTGC reference, missense
rs972925 - 122,614,808(-) GGATT(C/T)GCTCT reference, missense
rs972926 -- 122,614,563(-) AAACC(A/G)CAATT upstream-variant-2KB
rs1329957 - 122,615,226(-) TGGCC(C/T)ATGAG reference, missense
rs1329958 -- 122,613,304(-) AAAAG(C/G)GCATG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR1Q1 Gene

Variant ID Type Subtype PubMed ID
nsv893823 CNV Loss 21882294

Relevant External Links for OR1Q1 Gene

HapMap Linkage Disequilibrium report
OR1Q1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR1Q1 Gene

Disorders for OR1Q1 Gene

No disorders were found for OR1Q1 Gene.

No data available for UniProtKB/Swiss-Prot for OR1Q1 Gene

Publications for OR1Q1 Gene

  1. Specific repertoire of olfactory receptor genes in the male germ cells of several mammalian species. (PMID: 9119360) Vanderhaeghen P. … Parmentier M. (Genomics 1997) 3 4
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4
  3. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  4. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  5. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4

Products for OR1Q1 Gene

Sources for OR1Q1 Gene

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