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Aliases for OR1F2P Gene

Aliases for OR1F2P Gene

  • Olfactory Receptor Family 1 Subfamily F Member 2 Pseudogene 2 3 5
  • Olfactory Receptor, Family 1, Subfamily F, Member 2 2 3
  • OLFMF2 3 4
  • OR1F2 3 4
  • Olfactory Receptor, Family 1, Subfamily F, Member 2, Pseudogene 2
  • Olfactory Receptor, Family 1, Subfamily F, Member 3 Pseudogene 3
  • Olfactory Receptor, Family 1, Subfamily F, Member 11 3
  • Olfactory Receptor OR16-3 Pseudogene 3
  • OR16-3 3
  • OR1F11 3
  • OR1F3P 3
  • Hg91 3

External Ids for OR1F2P Gene

Previous HGNC Symbols for OR1F2P Gene

  • OR1F3P
  • OR1F2

Previous GeneCards Identifiers for OR1F2P Gene

  • GC16P003266
  • GC16P003207
  • GC16P003267
  • GC16P003271
  • GC16P003219
  • GC16P003251
  • GC16P003289
  • GC16P003328

Summaries for OR1F2P Gene

Entrez Gene Summary for OR1F2P Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR1F2P Gene

OR1F2P (Olfactory Receptor Family 1 Subfamily F Member 2 Pseudogene) is a Pseudogene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity.

UniProtKB/Swiss-Prot for OR1F2P Gene

  • Odorant receptor.

Gene Wiki entry for OR1F2P Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR1F2P Gene

Genomics for OR1F2P Gene

Regulatory Elements for OR1F2P Gene

Enhancers for OR1F2P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F003214 1.4 Ensembl ENCODE 0.8 +0.2 164 2.7 HDGF PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF597 CLUAP1 TIGD7 MEFV CREBBP THOC6 ZNF200 ZNF75A ZNF263 NAA60
GH16F003233 1.4 FANTOM5 ENCODE 0.3 +19.5 19472 2.2 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 ZNF143 CREBBP LOC105371055 ZNF263 THOC6 ZNF205 ERVK13-1 MTCO1P28 ENSG00000269937 MEFV ZNF174
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR1F2P on UCSC Golden Path with GeneCards custom track

Genomic Location for OR1F2P Gene

Chromosome:
16
Start:
3,215,562 bp from pter
End:
3,216,546 bp from pter
Size:
985 bases
Orientation:
Plus strand

Genomic View for OR1F2P Gene

Genes around OR1F2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR1F2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR1F2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR1F2P Gene

Proteins for OR1F2P Gene

  • Protein details for OR1F2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96R84-OR1F2_HUMAN
    Recommended name:
    Putative olfactory receptor 1F2
    Protein Accession:
    Q96R84

    Protein attributes for OR1F2P Gene

    Size:
    312 amino acids
    Molecular mass:
    34944 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AJ003145; Type=Frameshift; Positions=1; Evidence={ECO:0000305};

neXtProt entry for OR1F2P Gene

Post-translational modifications for OR1F2P Gene

No Post-translational modifications

Other Protein References for OR1F2P Gene

HORDE protein sequence:

No data available for DME Specific Peptides for OR1F2P Gene

Domains & Families for OR1F2P Gene

Gene Families for OR1F2P Gene

Protein Domains for OR1F2P Gene

Suggested Antigen Peptide Sequences for OR1F2P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96R84

UniProtKB/Swiss-Prot:

OR1F2_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR1F2P: view

Function for OR1F2P Gene

Molecular function for OR1F2P Gene

GENATLAS Biochemistry:
olfactory receptor,family 1,subfamily F,member 2,likely a pseudogene,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR1F2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR1F2P: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR1F2P Gene

Localization for OR1F2P Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR1F2P Gene

Cell membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for OR1F2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR1F2P: view

No data available for Subcellular locations from COMPARTMENTS for OR1F2P Gene

Pathways & Interactions for OR1F2P Gene

genes like me logo Genes that share pathways with OR1F2P: view

Pathways by source for OR1F2P Gene

Interacting Proteins for OR1F2P Gene

Gene Ontology (GO) - Biological Process for OR1F2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR1F2P: view

No data available for SIGNOR curated interactions for OR1F2P Gene

Transcripts for OR1F2P Gene

mRNA/cDNA for OR1F2P Gene

(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR1F2P Gene

Olfactory receptor, family 1, subfamily F, member 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OR1F2P Gene

No ASD Table

Relevant External Links for OR1F2P Gene

GeneLoc Exon Structure for
OR1F2P
ECgene alternative splicing isoforms for
OR1F2P

Expression for OR1F2P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR1F2P Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for OR1F2P Gene

This gene is overexpressed in Testis (x21.5), Brain - Cerebellar Hemisphere (x6.1), and Brain - Cerebellum (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of OR1F2P Gene:

OR1F2P

SOURCE GeneReport for Unigene cluster for OR1F2P Gene:

Hs.651203
genes like me logo Genes that share expression patterns with OR1F2P: view

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OR1F2P Gene

Orthologs for OR1F2P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for OR1F2P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Or1ab2 55 Olfr374
  • chr8:72,109,376-72,110,506
Or1w2 55 Olfr98
  • chr17:37,262,736-37,263,662
Species where no ortholog for OR1F2P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR1F2P Gene

ENSEMBL:
Gene Tree for OR1F2P (if available)
TreeFam:
Gene Tree for OR1F2P (if available)

Paralogs for OR1F2P Gene

(453) SIMAP similar genes for OR1F2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR1F2P: view

No data available for Paralogs for OR1F2P Gene

Variants for OR1F2P Gene

Sequence variations from dbSNP and Humsavar for OR1F2P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs11077322 -- 3,214,233(+) CGAAC(C/T)CCTGA upstream-variant-2KB
rs111610055 -- 3,216,130(+) CCATC(C/T)CCCAC nc-transcript-variant
rs111821648 -- 3,214,665(+) GTCGT(C/T)GTTTG upstream-variant-2KB
rs112416207 -- 3,214,078(+) ATCTC(A/C/G)GTTCA upstream-variant-2KB
rs112771632 -- 3,216,680(+) GGCTG(G/T)AGTGG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for OR1F2P Gene

Variant ID Type Subtype PubMed ID
nsv833127 CNV gain+loss 17160897
nsv571249 CNV gain 21841781
nsv516280 CNV gain 19592680
nsv509592 CNV insertion 20534489
nsv471074 CNV gain 18288195
nsv457355 CNV gain 19166990
nsv1044147 CNV loss 25217958
nsv1036149 CNV gain 25217958

Relevant External Links for OR1F2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR1F2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OR1F2P Gene

Disorders for OR1F2P Gene

Relevant External Links for OR1F2P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR1F2P

No disorders were found for OR1F2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR1F2P Gene

Publications for OR1F2P Gene

  1. A transcriptional map of the FMF region. (PMID: 9653642) Bernot A. … Weissenbach J. (Genomics 1998) 2 3 4 64
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4 64
  3. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 64
  4. Expression of members of the putative olfactory receptor gene family in mammalian germ cells. (PMID: 1370859) Parmentier M. … Vassart G. (Nature 1992) 3 64

Products for OR1F2P Gene

Sources for OR1F2P Gene

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