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Aliases for OR1F2P Gene

Aliases for OR1F2P Gene

  • Olfactory Receptor, Family 1, Subfamily F, Member 2, Pseudogene 2 3
  • OLFMF2 3 4
  • OR1F2 3 4
  • Olfactory Receptor, Family 1, Subfamily F, Member 2 Pseudogene 3
  • Olfactory Receptor, Family 1, Subfamily F, Member 3 Pseudogene 3
  • Olfactory Receptor, Family 1, Subfamily F, Member 11 3
  • Olfactory Receptor, Family 1, Subfamily F, Member 2 2
  • Olfactory Receptor OR16-3 Pseudogene 3
  • OR16-3 3
  • OR1F11 3
  • OR1F3P 3
  • Hg91 3

External Ids for OR1F2P Gene

Previous HGNC Symbols for OR1F2P Gene

  • OR1F3P
  • OR1F2

Previous GeneCards Identifiers for OR1F2P Gene

  • GC16P003266
  • GC16P003207
  • GC16P003267
  • GC16P003271

Summaries for OR1F2P Gene

Entrez Gene Summary for OR1F2P Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR1F2P Gene

OR1F2P (Olfactory Receptor, Family 1, Subfamily F, Member 2, Pseudogene) is a Pseudogene. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity.

UniProtKB/Swiss-Prot for OR1F2P Gene

  • Odorant receptor.

Gene Wiki entry for OR1F2P Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR1F2P Gene

Genomics for OR1F2P Gene

Regulatory Elements for OR1F2P Gene

Genomic Location for OR1F2P Gene

Start:
3,215,562 bp from pter
End:
3,216,546 bp from pter
Size:
985 bases
Orientation:
Plus strand

Genomic View for OR1F2P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR1F2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR1F2P Gene

Proteins for OR1F2P Gene

  • Protein details for OR1F2P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96R84-OR1F2_HUMAN
    Recommended name:
    Putative olfactory receptor 1F2
    Protein Accession:
    Q96R84
    Secondary Accessions:

    Protein attributes for OR1F2P Gene

    Size:
    312 amino acids
    Molecular mass:
    34944 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AJ003145; Type=Frameshift; Positions=1; Evidence={ECO:0000305};

neXtProt entry for OR1F2P Gene

Proteomics data for OR1F2P Gene at MOPED

Post-translational modifications for OR1F2P Gene

No Post-translational modifications

Other Protein References for OR1F2P Gene

Reactome Protein details:
HORDE protein sequence:

No data available for DME Specific Peptides for OR1F2P Gene

Domains for OR1F2P Gene

Gene Families for OR1F2P Gene

HGNC:
  • OR1 :GPCR / Class A : Olfactory receptors

Protein Domains for OR1F2P Gene

Suggested Antigen Peptide Sequences for OR1F2P Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96R84

UniProtKB/Swiss-Prot:

OR1F2_HUMAN :
  • Q96R84
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR1F2P: view

Function for OR1F2P Gene

Molecular function for OR1F2P Gene

GENATLAS Biochemistry: olfactory receptor,family 1,subfamily F,member 2,likely a pseudogene,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function: Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR1F2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR1F2P: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OR1F2P Gene

Localization for OR1F2P Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR1F2P Gene

Cell membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for OR1F2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR1F2P: view

No data available for Subcellular locations from COMPARTMENTS for OR1F2P Gene

Pathways for OR1F2P Gene

genes like me logo Genes that share pathways with OR1F2P: view

Pathways by source for OR1F2P Gene

Interacting Proteins for OR1F2P Gene

Gene Ontology (GO) - Biological Process for OR1F2P Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR1F2P: view

Transcripts for OR1F2P Gene

mRNA/cDNA for OR1F2P Gene

(3) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR1F2P Gene

Olfactory receptor, family 1, subfamily F, member 2:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR1F2P

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR1F2P Gene

No ASD Table

Relevant External Links for OR1F2P Gene

GeneLoc Exon Structure for
OR1F2P
ECgene alternative splicing isoforms for
OR1F2P

Expression for OR1F2P Gene

mRNA expression in normal human tissues for OR1F2P Gene

mRNA differential expression in normal tissues according to GTEx for OR1F2P Gene

This gene is overexpressed in Testis (21.5), Brain - Cerebellar Hemisphere (6.1), and Brain - Cerebellum (5.0).

SOURCE GeneReport for Unigene cluster for OR1F2P Gene Hs.651203

genes like me logo Genes that share expressions with OR1F2P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for OR1F2P Gene

Orthologs for OR1F2P Gene

Evolution for OR1F2P Gene

ENSEMBL:
Gene Tree for OR1F2P (if available)
TreeFam:
Gene Tree for OR1F2P (if available)

No data available for Orthologs for OR1F2P Gene

Paralogs for OR1F2P Gene

Selected SIMAP similar genes for OR1F2P Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR1F2P: view

No data available for Paralogs for OR1F2P Gene

Variants for OR1F2P Gene

Sequence variations from dbSNP and Humsavar for OR1F2P Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs579134 -- 3,215,428(+) GAGTC(C/G)TCTAG upstream-variant-2KB
rs2113248 -- 3,214,977(+) GTGAA(A/C)AATTA upstream-variant-2KB
rs2113249 -- 3,215,055(+) AGTAA(A/T)GAGTA upstream-variant-2KB
rs2179012 -- 3,216,564(+) CTTAA(A/G)AAAGT downstream-variant-500B
rs2550401 -- 3,216,071(+) CTCGA(A/G/T)TGCTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for OR1F2P Gene

Variant ID Type Subtype PubMed ID
nsv457355 CNV Gain 19166990
nsv905208 CNV Loss 21882294
nsv833127 CNV Gain+Loss 17160897
nsv471074 CNV Gain 18288195
nsv905209 CNV Gain 21882294
nsv516280 CNV Gain 19592680
nsv509592 CNV Insertion 20534489

Relevant External Links for OR1F2P Gene

HapMap Linkage Disequilibrium report
OR1F2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR1F2P Gene

Disorders for OR1F2P Gene

No disorders were found for OR1F2P Gene.

No data available for UniProtKB/Swiss-Prot for OR1F2P Gene

Publications for OR1F2P Gene

  1. A transcriptional map of the FMF region. (PMID: 9653642) Bernot A. … Weissenbach J. (Genomics 1998) 2 3 4
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4
  3. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3
  4. Expression of members of the putative olfactory receptor gene family in mammalian germ cells. (PMID: 1370859) Parmentier M. … Vassart G. (Nature 1992) 3

Products for OR1F2P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate OR1F2P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for OR1F2P
    • Block miRNA regulation of OR1F2P using miScript Target Protectors

    Sources for OR1F2P Gene

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