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Aliases for OR1D4 Gene

Aliases for OR1D4 Gene

  • Olfactory Receptor Family 1 Subfamily D Member 4 (Gene/Pseudogene) 2 3 5
  • Olfactory Receptor 17-30 3 4
  • OR17-30 3 4
  • Olfactory Receptor, Family 1, Subfamily D, Member 4 (Gene/Pseudogene) 2
  • Olfactory Receptor, Family 1, Subfamily D, Member 4 Pseudogene 3
  • Olfactory Receptor, Family 1, Subfamily D, Member 4 2
  • Olfactory Receptor Pseudogene 3
  • Olfactory Receptor OR17-1 3
  • Olfactory Receptor 1D4 3

External Ids for OR1D4 Gene

Previous GeneCards Identifiers for OR1D4 Gene

  • GC17P003458
  • GC17M003307
  • GC17M002916
  • GC17M003172
  • GC17P003350
  • GC17M002913
  • GC17P003090
  • GC17P003144
  • GC17P003036

Summaries for OR1D4 Gene

Entrez Gene Summary for OR1D4 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2010]

GeneCards Summary for OR1D4 Gene

OR1D4 (Olfactory Receptor Family 1 Subfamily D Member 4 (Gene/Pseudogene)) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity.

UniProtKB/Swiss-Prot for OR1D4 Gene

  • Odorant receptor.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR1D4 Gene

Genomics for OR1D4 Gene

Regulatory Elements for OR1D4 Gene

Enhancers for OR1D4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F003237 0.2 Ensembl 0.8 -2.1 -2075 1.6 OR1D4 OR1A1
GH17F003244 0.2 Ensembl 0.8 +4.2 4225 0.2 OR3A1 OR1D4 GC17M003252
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR1D4 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR1D4 Gene

Chromosome:
17
Start:
3,240,676 bp from pter
End:
3,241,614 bp from pter
Size:
939 bases
Orientation:
Plus strand

Genomic View for OR1D4 Gene

Genes around OR1D4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR1D4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR1D4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR1D4 Gene

Proteins for OR1D4 Gene

  • Protein details for OR1D4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P47884-OR1D4_HUMAN
    Recommended name:
    Olfactory receptor 1D4
    Protein Accession:
    P47884
    Secondary Accessions:
    • Q96RA5
    • Q9UM75

    Protein attributes for OR1D4 Gene

    Size:
    311 amino acids
    Molecular mass:
    35227 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR1D4 Gene

Post-translational modifications for OR1D4 Gene

Other Protein References for OR1D4 Gene

HORDE protein sequence:

No data available for DME Specific Peptides for OR1D4 Gene

Domains & Families for OR1D4 Gene

Gene Families for OR1D4 Gene

Protein Domains for OR1D4 Gene

Suggested Antigen Peptide Sequences for OR1D4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P47884

UniProtKB/Swiss-Prot:

OR1D4_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR1D4: view

Function for OR1D4 Gene

Molecular function for OR1D4 Gene

GENATLAS Biochemistry:
olfactory receptor,family 1,subfamily D,member 4,G protein coupled receptor superfamily
UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR1D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR1D4: view
genes like me logo Genes that share phenotypes with OR1D4: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR1D4 Gene

Localization for OR1D4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR1D4 Gene

Cell membrane; Multi-pass membrane protein.

Gene Ontology (GO) - Cellular Components for OR1D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane TAS 8004088
genes like me logo Genes that share ontologies with OR1D4: view

No data available for Subcellular locations from COMPARTMENTS for OR1D4 Gene

Pathways & Interactions for OR1D4 Gene

genes like me logo Genes that share pathways with OR1D4: view

Pathways by source for OR1D4 Gene

Interacting Proteins for OR1D4 Gene

Gene Ontology (GO) - Biological Process for OR1D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0007606 sensory perception of chemical stimulus TAS 8004088
GO:0050907 detection of chemical stimulus involved in sensory perception IBA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR1D4: view

No data available for SIGNOR curated interactions for OR1D4 Gene

Transcripts for OR1D4 Gene

mRNA/cDNA for OR1D4 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR1D4 Gene

No ASD Table

Relevant External Links for OR1D4 Gene

GeneLoc Exon Structure for
OR1D4
ECgene alternative splicing isoforms for
OR1D4

Expression for OR1D4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OR1D4 Gene

Protein differential expression in normal tissues from HIPED for OR1D4 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for OR1D4 Gene



Protein tissue co-expression partners for OR1D4 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR1D4 Gene:

OR1D4

SOURCE GeneReport for Unigene cluster for OR1D4 Gene:

Hs.653087
genes like me logo Genes that share expression patterns with OR1D4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for OR1D4 Gene

Orthologs for OR1D4 Gene

Evolution for OR1D4 Gene

ENSEMBL:
Gene Tree for OR1D4 (if available)
TreeFam:
Gene Tree for OR1D4 (if available)

No data available for Orthologs for OR1D4 Gene

Paralogs for OR1D4 Gene

(449) SIMAP similar genes for OR1D4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR1D4: view

No data available for Paralogs for OR1D4 Gene

Variants for OR1D4 Gene

Sequence variations from dbSNP and Humsavar for OR1D4 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs112197448 -- 3,241,632(+) AAAGG(A/G)GATTG downstream-variant-500B
rs112722787 -- 3,239,861(+) CCATT(A/T)TTCAC upstream-variant-2KB
rs112957801 -- 3,240,108(+) GCTTA(C/T)GGGGA upstream-variant-2KB
rs139589161 -- 3,241,365(+) CCCTC(A/G)GCCTC downstream-variant-500B
rs140886181 -- 3,241,404(+) GCCTC(C/G)CATTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for OR1D4 Gene

Variant ID Type Subtype PubMed ID
dgv4n29 CNV loss 16826518
esv2660206 CNV deletion 23128226
esv3639739 CNV loss 21293372
esv3892949 CNV loss 25118596
esv3892950 CNV loss 25118596
nsv1060926 CNV gain 25217958
nsv1065489 CNV gain 25217958
nsv1149210 CNV duplication 26484159
nsv457637 CNV loss 19166990
nsv507831 OTHER sequence alteration 20534489
nsv526486 CNV gain 19592680
nsv574230 CNV loss 21841781
nsv574231 CNV gain 21841781
nsv7288 OTHER inversion 18451855
nsv960395 CNV duplication 23825009

Relevant External Links for OR1D4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR1D4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OR1D4 Gene

Disorders for OR1D4 Gene

Relevant External Links for OR1D4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR1D4

No disorders were found for OR1D4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR1D4 Gene

Publications for OR1D4 Gene

  1. Sequence, structure, and evolution of a complete human olfactory receptor gene cluster. (PMID: 10673334) Glusman G. … Lancet D. (Genomics 2000) 2 3 4 64
  2. Olfactory receptor gene cluster on human chromosome 17: possible duplication of an ancestral receptor repertoire. (PMID: 8004088) Ben-Arie N. … North M.A. (Hum. Mol. Genet. 1994) 2 3 4 64
  3. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4 64
  4. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for OR1D4 Gene

Sources for OR1D4 Gene

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