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Aliases for OR13F1 Gene

Aliases for OR13F1 Gene

  • Olfactory Receptor, Family 13, Subfamily F, Member 1 2 3
  • Olfactory Receptor OR9-6 3 4
  • Olfactory Receptor 13F1 3
  • OR9-6 3

External Ids for OR13F1 Gene

Previous GeneCards Identifiers for OR13F1 Gene

  • GC09U990153
  • GC09P102639
  • GC09P104346
  • GC09P106306
  • GC09P107266

Summaries for OR13F1 Gene

Entrez Gene Summary for OR13F1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR13F1 Gene

OR13F1 (Olfactory Receptor, Family 13, Subfamily F, Member 1) is a Protein Coding gene. Diseases associated with OR13F1 include paratyphoid fever. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include olfactory receptor activity and adrenergic receptor activity. An important paralog of this gene is OR13C7.

UniProtKB/Swiss-Prot for OR13F1 Gene

  • Odorant receptor.

Gene Wiki entry for OR13F1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR13F1 Gene

Genomics for OR13F1 Gene

Regulatory Elements for OR13F1 Gene

Genomic Location for OR13F1 Gene

104,504,263 bp from pter
104,505,222 bp from pter
960 bases
Plus strand

Genomic View for OR13F1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR13F1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR13F1 Gene

Proteins for OR13F1 Gene

  • Protein details for OR13F1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Olfactory receptor 13F1
    Protein Accession:
    Secondary Accessions:
    • Q6IF50

    Protein attributes for OR13F1 Gene

    319 amino acids
    Molecular mass:
    35646 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR13F1 Gene

Proteomics data for OR13F1 Gene at MOPED

Post-translational modifications for OR13F1 Gene

  • Glycosylation at Asn5
  • Modification sites at PhosphoSitePlus

Other Protein References for OR13F1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR13F1 Gene

Domains for OR13F1 Gene

Gene Families for OR13F1 Gene

Protein Domains for OR13F1 Gene

Suggested Antigen Peptide Sequences for OR13F1 Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the G-protein coupled receptor 1 family.
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR13F1: view

Function for OR13F1 Gene

Molecular function for OR13F1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR13F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR13F1: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR13F1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR13F1 Gene

Localization for OR13F1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR13F1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

Jensen Localization Image for OR13F1 Gene COMPARTMENTS Subcellular localization image for OR13F1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR13F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR13F1: view

Pathways for OR13F1 Gene

genes like me logo Genes that share pathways with OR13F1: view

Pathways by source for OR13F1 Gene

Interacting Proteins for OR13F1 Gene

Gene Ontology (GO) - Biological Process for OR13F1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR13F1: view

Transcripts for OR13F1 Gene

mRNA/cDNA for OR13F1 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR13F1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR13F1 Gene

No ASD Table

Relevant External Links for OR13F1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for OR13F1 Gene

mRNA expression in normal human tissues for OR13F1 Gene

SOURCE GeneReport for Unigene cluster for OR13F1 Gene Hs.553602

genes like me logo Genes that share expressions with OR13F1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for OR13F1 Gene

Orthologs for OR13F1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR13F1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia OR13F1 35
  • 83.77 (n)
  • 78.9 (a)
-- 36
  • 77 (a)
-- 36
  • 80 (a)
(Canis familiaris)
Mammalia OR13F1 35
  • 85.93 (n)
  • 85.39 (a)
-- 36
  • 82 (a)
OR13F1 36
  • 84 (a)
(Mus musculus)
Mammalia Olfr275 35
  • 82.24 (n)
  • 79.94 (a)
Olfr275 16
Olfr275 36
  • 80 (a)
(Pan troglodytes)
Mammalia LOC473000 35
  • 97.6 (n)
  • 95.61 (a)
OR13F1 36
  • 96 (a)
(Rattus norvegicus)
Mammalia Olr841 35
  • 83.07 (n)
  • 80.56 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 69 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 49 (a)
Species with no ortholog for OR13F1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR13F1 Gene

Gene Tree for OR13F1 (if available)
Gene Tree for OR13F1 (if available)

Paralogs for OR13F1 Gene

(452) SIMAP similar genes for OR13F1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with OR13F1: view

Variants for OR13F1 Gene

Sequence variations from dbSNP and Humsavar for OR13F1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1403811 - 104,504,662(-) GATGA(C/T)AGGGT missense, reference
rs1403812 - 104,504,563(-) GTACA(C/T)CTGAG reference, missense
rs1464674 -- 104,503,171(+) AGCAC(G/T)CATTC upstream-variant-2KB
rs1464675 -- 104,503,401(+) CTACA(A/G)TTAGA upstream-variant-2KB
rs1464676 -- 104,503,886(+) CATGC(C/T)AATGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR13F1 Gene

Variant ID Type Subtype PubMed ID
nsv893670 CNV Loss 21882294

Relevant External Links for OR13F1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR13F1 Gene

Disorders for OR13F1 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for OR13F1 Gene in MalaCards »

(1) Disease for OR13F1 Gene

(1) University of Copenhagen DISEASES for OR13F1 Gene

Relevant External Links for OR13F1

Genetic Association Database (GAD)
genes like me logo Genes that share disorders with OR13F1: view

No data available for OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships and Genatlas for OR13F1 Gene

Publications for OR13F1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OR13F1 Gene

Sources for OR13F1 Gene

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