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Aliases for OR13D1 Gene

Aliases for OR13D1 Gene

  • Olfactory Receptor Family 13 Subfamily D Member 1 2 3 5
  • Olfactory Receptor, Family 13, Subfamily D, Member 1 2 3
  • Olfactory Receptor OR9-15 3 4
  • OR9-15 3

External Ids for OR13D1 Gene

Previous GeneCards Identifiers for OR13D1 Gene

  • GC09U990158
  • GC09P102837
  • GC09P104536
  • GC09P106496
  • GC09P107456

Summaries for OR13D1 Gene

Entrez Gene Summary for OR13D1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR13D1 Gene

OR13D1 (Olfactory Receptor Family 13 Subfamily D Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Olfactory Signaling Pathway. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR13C7.

UniProtKB/Swiss-Prot for OR13D1 Gene

  • Odorant receptor.

Gene Wiki entry for OR13D1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR13D1 Gene

Genomics for OR13D1 Gene

Regulatory Elements for OR13D1 Gene

Genomic Location for OR13D1 Gene

Chromosome:
9
Start:
104,694,422 bp from pter
End:
104,695,462 bp from pter
Size:
1,041 bases
Orientation:
Plus strand

Genomic View for OR13D1 Gene

Genes around OR13D1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR13D1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR13D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR13D1 Gene

Proteins for OR13D1 Gene

  • Protein details for OR13D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGV5-O13D1_HUMAN
    Recommended name:
    Olfactory receptor 13D1
    Protein Accession:
    Q8NGV5
    Secondary Accessions:
    • B9EIS1
    • Q6IFL1

    Protein attributes for OR13D1 Gene

    Size:
    346 amino acids
    Molecular mass:
    39125 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR13D1 Gene

Proteomics data for OR13D1 Gene at MOPED

Post-translational modifications for OR13D1 Gene

  • Glycosylation at Asn 37 and Asn 300
  • Modification sites at PhosphoSitePlus

Other Protein References for OR13D1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

Antibody Products

No data available for DME Specific Peptides for OR13D1 Gene

Domains & Families for OR13D1 Gene

Gene Families for OR13D1 Gene

Protein Domains for OR13D1 Gene

Suggested Antigen Peptide Sequences for OR13D1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGV5

UniProtKB/Swiss-Prot:

O13D1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR13D1: view

Function for OR13D1 Gene

Molecular function for OR13D1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.
genes like me logo Genes that share phenotypes with OR13D1: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR13D1 Gene

Localization for OR13D1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR13D1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR13D1 Gene COMPARTMENTS Subcellular localization image for OR13D1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR13D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA,IBA --
genes like me logo Genes that share ontologies with OR13D1: view

Pathways & Interactions for OR13D1 Gene

genes like me logo Genes that share pathways with OR13D1: view

Pathways by source for OR13D1 Gene

Interacting Proteins for OR13D1 Gene

Gene Ontology (GO) - Biological Process for OR13D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR13D1: view

No data available for SIGNOR curated interactions for OR13D1 Gene

Drugs & Compounds for OR13D1 Gene

No Compound Related Data Available

Transcripts for OR13D1 Gene

mRNA/cDNA for OR13D1 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR13D1 Gene

No ASD Table

Relevant External Links for OR13D1 Gene

GeneLoc Exon Structure for
OR13D1
ECgene alternative splicing isoforms for
OR13D1

Expression for OR13D1 Gene

mRNA expression in normal human tissues for OR13D1 Gene

mRNA differential expression in normal tissues according to GTEx for OR13D1 Gene

This gene is overexpressed in Testis (x17.6).

SOURCE GeneReport for Unigene cluster for OR13D1 Gene Hs.553683

genes like me logo Genes that share expression patterns with OR13D1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for OR13D1 Gene

Orthologs for OR13D1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR13D1 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia LOC610556 35
  • 86.22 (n)
  • 86.22 (a)
-- 36
  • 84 (a)
OneToMany
-- 36
  • 87 (a)
OneToMany
-- 36
  • 88 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Olfr270 35
  • 84.3 (n)
  • 86.45 (a)
Olfr270 16
Olfr270 36
  • 86 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LOC464628 35
  • 99.03 (n)
  • 98.55 (a)
OR13D1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Olr853 35
  • 84.19 (n)
  • 85.16 (a)
cow
(Bos Taurus)
Mammalia OR13D1 36
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 65 (a)
OneToMany
-- 36
  • 69 (a)
OneToMany
-- 36
  • 75 (a)
OneToMany
-- 36
  • 63 (a)
OneToMany
-- 36
  • 68 (a)
OneToMany
-- 36
  • 73 (a)
OneToMany
-- 36
  • 78 (a)
OneToMany
-- 36
  • 78 (a)
OneToMany
-- 36
  • 72 (a)
OneToMany
-- 36
  • 72 (a)
OneToMany
-- 36
  • 70 (a)
OneToMany
-- 36
  • 65 (a)
OneToMany
OPOR64 36
  • 65 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia OR13D1 36
  • 71 (a)
OneToOne
Species with no ortholog for OR13D1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR13D1 Gene

ENSEMBL:
Gene Tree for OR13D1 (if available)
TreeFam:
Gene Tree for OR13D1 (if available)

Paralogs for OR13D1 Gene

(445) SIMAP similar genes for OR13D1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for OR13D1 Gene

genes like me logo Genes that share paralogs with OR13D1: view

Variants for OR13D1 Gene

Sequence variations from dbSNP and Humsavar for OR13D1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10991359 - 104,694,482(+) TCCTT(C/T)TCTAT reference, missense
rs13294411 - 104,694,611(+) TCTGC(A/C/G/T)TCATC reference, missense
rs10820709 - 104,694,994(+) TTGCA(A/C)ACAGT reference, missense
rs10761073 - 104,695,251(+) GCACT(C/T)GATTG reference, missense
VAR_062066 -

Variation tolerance for OR13D1 Gene

Residual Variation Intolerance Score: 91.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.31; 81.44% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR13D1 Gene

HapMap Linkage Disequilibrium report
OR13D1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for OR13D1 Gene

Disorders for OR13D1 Gene

Relevant External Links for OR13D1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR13D1

No disorders were found for OR13D1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR13D1 Gene

Publications for OR13D1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OR13D1 Gene

Sources for OR13D1 Gene

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