OR13A1 Gene
protein-coding GIFtS: 45
GCID: GC10M045798
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|
olfactory receptor, family 13, subfamily A, member 1
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Aliases
for OR13A1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Olfactory Receptor, Family 13, Subfamily A, Member 11 2 | | Olfactory Receptor OR10-32 3 | | Olfactory Receptor 13A12 | | Seven Transmembrane Helix Receptor2 |
Export aliases for OR13A1 gene to outside databasesPrevious GC identifers: GC10U990104 GC10M045083 GC10M045118 GC10M042323 |
Summaries
for OR13A1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for OR13A1:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers theperception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors(GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with manyneurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction ofodorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to theolfactory receptor genes and proteins for this organism is independent of other organisms. (provided by RefSeq, Jul2008)
UniProtKB/Swiss-Prot: O13A1_HUMAN, Q8NGR1Function: Odorant receptor (Potential)
Gene Wiki entry for OR13A1
|
Genomic Views
for OR13A1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000010.10 NC_018921.1 NT_033985.7
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the OR13A1 gene promoter:
LHX3b/Lhx3b RP58 Cdc5 FOXL1 MEF-2A PPAR-gamma1 Nkx6-1 LHX3a/Lhx3a PPAR-gamma2 aMEF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for OR13A1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR13A1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 10q11.21 Ensembl cytogenetic band: 10q11.21 HGNC cytogenetic band: 10q11.21OR13A1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10M045798: view genomic region
(about GC identifiers)
Start:
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45,798,887 bp from pter |
End:
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45,799,813 bp from pter |
Size:
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927 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr10-,PATCHES 45,790,070-45,803,024 |
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Proteins
for OR13A1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: O13A1_HUMAN, Q8NGR1 (See
protein sequence)Recommended Name: Olfactory receptor 13A1 Size: 328 amino acids; 36494 Da
Subcellular location: Cell membrane; Multi-pass membrane protein
Caution: It is uncertain whether Met-1 or Met-20 is the initiator
Sequence caution: Sequence=BAC05949.1; Type=Erroneous initiation; Sequence=CAH73801.1; Type=Erroneous initiation;
Secondary accessions: Q2M3M4 Q5VV57 Q6IFH5 Q6ZMN6Explore the universe of human proteins at neXtProt for OR13A1: NX_Q8NGR1
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8NGR1
HORDE protein sequence for OR13A1
OR13A1 Protein expression data from MOPED and PaxDb: --
REFSEQ proteins: NP_001004297.2
ENSEMBL proteins: ENSP00000451950 ENSP00000363522 ENSP00000438657
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005886 | plasma membrane |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- |
OR13A1 for ontologies About GeneDecksing
OR13A1 Antibody Products:
Assay Products for OR13A1: |
Protein
Domains /
Families
for OR13A1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
OR13A1 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8NGR1ProtoNet protein and cluster: Q8NGR1 1 Blocks protein family: IPB000725 Olfactory receptor signature
UniProtKB/Swiss-Prot: O13A1_HUMAN, Q8NGR1Similarity: Belongs to the G-protein coupled receptor 1 family |
Function
for OR13A1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: O13A1_HUMAN, Q8NGR1Function: Odorant receptor (Potential)
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR13A1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR13A1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: OR13A1 (NM_001004297) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OR13A1 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR13A1 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR13A1 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004930 | G-protein coupled receptor activity |
IEA | -- | | GO:0004984 | olfactory receptor activity |
IEA | -- |
OR13A1 for ontologies About GeneDecksing
1 GenomeRNAi human phenotype for OR13A1:
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Pathways & Interactions
for OR13A1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Olfactory transduction | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 
Kegg Pathway (Kegg details for OR13A1):
OR13A1 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OR13A1
|
Drugs & Compounds
for OR13A1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for OR13A1
Search CenterWatch for drugs/clinical trials and news about OR13A1 / O13A1
|
Transcripts
for OR13A1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for OR13A1 gene: NM_001004297.2 Unigene Cluster for OR13A1: Olfactory receptor, family 13, subfamily A, member 1 Hs.532435 [show with all ESTs]Unigene Representative Sequence: AK1315553 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000553795(uc001jcc.1) ENST00000374401 ENST00000536058(uc001jcd.1)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR13A1 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR13A1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: OR13A1 (NM_001004297) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OR13A1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR13A1 |
Additional cDNA sequence: AK131555.1 BC104853.1 BC104855.1 BC143622.1 2 DOTS entries: DT.121212904 DT.102821487 3 AceView cDNA sequences: AA620616 NM_001004297 AK131555
GeneLoc Exon Structure
|
Expression
for OR13A1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| OR13A1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGTCAGCTCT
About this image
SOURCE GeneReport for Unigene cluster: Hs.532435
SABiosciences Custom PCR Arrays for OR13A1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for OR13A1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat OR13A1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OR13A1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OR13A1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR13A1 |
Orthologs
for OR13A1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for OR13A1 gene from 2/7 species (see all 7) About this table
ENSEMBL Gene Tree for OR13A1 (if available)
TreeFam Gene Tree for OR13A1 (if available) |
Paralogs
for OR13A1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for OR13A1 gene
- OR13G12
18/452 SIMAP similar genes for OR13A1 using alignment to 1 protein entry: O13A1_HUMAN(see all similar genes):OR13G1 6M1-16 OR16-89 OR1F1 OR5A2 OR5V1
OR16-36 OR16-37 OR16-88 OR16-90 OR2G6 OR1F12
OR1F2P OR2G3 OR4B1 OR4C15 OR4Q2 OR5A1
OR13A1 for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for OR13A1
PGOHUM00000238970
|
Genomic Variants
for OR13A1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 10 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for OR13A1 ( 45798887 - 45799813 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for OR13A1
1 CNV: 9148 | SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for OR13A1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
OR13A1 for disorders About GeneDecksing
1  disease for OR13A1: About MalaCardsneuronitis
Export disorders for OR13A1 gene to outside databases
|
Publications
for OR13A1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for OR13A1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with OR13A1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The human olfactory receptor gene family. (PubMed id 14983052)1, 2 Malnic B.... Buck L.B. (2004)
- The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
- Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)
|
External Searches for OR13A1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing OR13A1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing OR13A1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing OR13A1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for OR13A1 | Pharmacogenomics, SNPs, Pathways | | HORDE entry for OR13A1 | The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science |
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| | |
About This Section
| Patent Information for OR13A1 gene:
Search GeneIP for patents involving OR13A1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for OR13A1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for OR13A1 | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for OR13A1 | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for OR13A1 | | | OriGene Protein Over-expression Lysate for OR13A1 | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for OR13A1 | | Browse 3'-UTR reporter clones for miRNA target validation | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for OR13A1 | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for OR13A1 | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for OR13A1 | | OriGene Custom Protein Services for OR13A1 | | | OriGene Custom Immunoassay Development | | |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat OR13A1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing OR13A1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OR13A1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat OR13A1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OR13A1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OR13A1 |
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 | | | OR13A1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OR13A1 |
|  |  |  | | | | Search ThermoFisher Antibodies for OR13A1 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat OR13A1 |
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