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Aliases for OR10S1 Gene

Aliases for OR10S1 Gene

  • Olfactory Receptor Family 10 Subfamily S Member 1 2 3 5
  • Olfactory Receptor OR11-279 3 4
  • Olfactory Receptor, Family 10, Subfamily S, Member 1 2
  • Olfactory Receptor 10S1 3
  • OR11-279 3

External Ids for OR10S1 Gene

Previous GeneCards Identifiers for OR10S1 Gene

  • GC11U990360
  • GC11M123386
  • GC11M123353
  • GC11M123849

Summaries for OR10S1 Gene

Entrez Gene Summary for OR10S1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR10S1 Gene

OR10S1 (Olfactory Receptor Family 10 Subfamily S Member 1) is a Protein Coding gene. Among its related pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR10G6.

UniProtKB/Swiss-Prot for OR10S1 Gene

  • Odorant receptor.

Gene Wiki entry for OR10S1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR10S1 Gene

Genomics for OR10S1 Gene

Regulatory Elements for OR10S1 Gene

Enhancers for OR10S1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G124008 0.3 FANTOM5 11.2 -30.9 -30894 0.4 OR8D1 OR4D5 OR10G9 OR8D4 OR10G4 OR6M1 OR8G1 OR10S1 OR8D2 OR6X1
GH11G123740 1.4 FANTOM5 ENCODE 1.4 +235.7 235708 3.8 HNRNPUL1 PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 YY1 ZNF207 ZNF143 ZNF202 OR6X1 OR10G7 OR6M1 OR10G4 OR8G2P OR4D5 TMEM225 OR6T1 OR8D4
GH11G123583 0.9 FANTOM5 1.5 +393.9 393913 0.4 ATF1 SIN3A FEZF1 GATA2 ETV6 FOS IKZF2 ELF1 ZEB2 MAFF OR10G7 OR6X1 OR10G4 OR6T1 OR4D5 OR6M1 OR8D4 OR10S1 GC11M123576 GC11M123593
GH11G123695 0.4 FANTOM5 1.5 +282.4 282448 0.4 ATF2 OR6X1 OR8D4 OR10G4 OR4D5 OR10G7 SCN3B ZNF202 OR6M1 OR6T1 OR10G9
GH11G123977 0.6 ENCODE 0.7 -0.3 -349 2.0 CEBPB CEBPG ZEB2 EP300 NFE2 TRIM24 EMSY NFE2L2 ZNF202 OR10S1 OR6T1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR10S1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR10S1 Gene

Chromosome:
11
Start:
123,976,661 bp from pter
End:
123,977,781 bp from pter
Size:
1,121 bases
Orientation:
Minus strand

Genomic View for OR10S1 Gene

Genes around OR10S1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR10S1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR10S1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR10S1 Gene

Proteins for OR10S1 Gene

  • Protein details for OR10S1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGN2-O10S1_HUMAN
    Recommended name:
    Olfactory receptor 10S1
    Protein Accession:
    Q8NGN2
    Secondary Accessions:
    • B9EH43
    • Q6IEV3
    • Q96R78

    Protein attributes for OR10S1 Gene

    Size:
    331 amino acids
    Molecular mass:
    36501 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC05978.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for OR10S1 Gene

Post-translational modifications for OR10S1 Gene

  • Glycosylation at Asn18
  • Modification sites at PhosphoSitePlus

Other Protein References for OR10S1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR10S1 Gene

Domains & Families for OR10S1 Gene

Gene Families for OR10S1 Gene

Protein Domains for OR10S1 Gene

Suggested Antigen Peptide Sequences for OR10S1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGN2

UniProtKB/Swiss-Prot:

O10S1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR10S1: view

Function for OR10S1 Gene

Molecular function for OR10S1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR10S1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR10S1: view
genes like me logo Genes that share phenotypes with OR10S1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR10S1 Gene

Localization for OR10S1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR10S1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR10S1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR10S1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR10S1: view

Pathways & Interactions for OR10S1 Gene

genes like me logo Genes that share pathways with OR10S1: view

Pathways by source for OR10S1 Gene

Interacting Proteins for OR10S1 Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 12)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000431914%0d%0a9606.ENSP00000334051%0d%0a9606.ENSP00000367869%0d%0a9606.ENSP00000248572%0d%0a9606.ENSP00000359719%0d%0a9606.ENSP00000409581%0d%0a
Selected Interacting proteins: ENSP00000431914 Q8NGN2-O10S1_HUMAN for OR10S1 Gene via STRING IID

Gene Ontology (GO) - Biological Process for OR10S1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IBA,IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR10S1: view

No data available for SIGNOR curated interactions for OR10S1 Gene

Drugs & Compounds for OR10S1 Gene

No Compound Related Data Available

Transcripts for OR10S1 Gene

mRNA/cDNA for OR10S1 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR10S1 Gene

No ASD Table

Relevant External Links for OR10S1 Gene

GeneLoc Exon Structure for
OR10S1
ECgene alternative splicing isoforms for
OR10S1

Expression for OR10S1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR10S1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR10S1 Gene:

OR10S1

SOURCE GeneReport for Unigene cluster for OR10S1 Gene:

Hs.553637
genes like me logo Genes that share expression patterns with OR10S1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR10S1 Gene

Orthologs for OR10S1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR10S1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466818 34
  • 99.07 (n)
dog
(Canis familiaris)
Mammalia OR10S1 34 35
  • 86.1 (n)
cow
(Bos Taurus)
Mammalia OR10S1 34
  • 85.43 (n)
mouse
(Mus musculus)
Mammalia Or10s1 55 Olfr982 34 16 35
  • 83.92 (n)
rat
(Rattus norvegicus)
Mammalia Olr1337 34
  • 82.38 (n)
oppossum
(Monodelphis domestica)
Mammalia OR10S1 35
  • 74 (a)
OneToOne
Species where no ortholog for OR10S1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR10S1 Gene

ENSEMBL:
Gene Tree for OR10S1 (if available)
TreeFam:
Gene Tree for OR10S1 (if available)

Paralogs for OR10S1 Gene

Paralogs for OR10S1 Gene

(443) SIMAP similar genes for OR10S1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR10S1: view

Variants for OR10S1 Gene

Sequence variations from dbSNP and Humsavar for OR10S1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1001193742 -- 123,978,441(+) TTAGC(C/G)TAACA upstream-variant-2KB
rs1001832785 -- 123,978,710(+) CTGTC(C/T)TACAT upstream-variant-2KB
rs1002891773 -- 123,979,604(+) AGCAT(A/G)TCACC upstream-variant-2KB
rs1004516753 -- 123,978,493(+) TCCGT(A/G)TTGTC upstream-variant-2KB
rs1004827669 -- 123,978,818(+) TCATC(C/T)CCTCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR10S1 Gene

Variant ID Type Subtype PubMed ID
dgv82n21 CNV gain 19592680
esv2761716 CNV loss 21179565

Variation tolerance for OR10S1 Gene

Residual Variation Intolerance Score: 75.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 11.80; 93.39% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR10S1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR10S1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR10S1 Gene

Disorders for OR10S1 Gene

Relevant External Links for OR10S1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR10S1

No disorders were found for OR10S1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR10S1 Gene

Publications for OR10S1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4 64
  3. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for OR10S1 Gene

Sources for OR10S1 Gene

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