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OR10A4 Gene

protein-coding   GIFtS: 49
GCID: GC11P006897

Olfactory Receptor, Family 10, Subfamily A, Member 4

(Previous names: olfactory receptor, family 10, subfamily A, member 4 pseudogene)
(Previous symbol: OR10A4P)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Olfactory Receptor, Family 10, Subfamily A, Member 41 2     HP2 Olfactory Receptor2
OR10A4P1 2 3     Olfactory Receptor 10A42
Olfactory Receptor, Family 10, Subfamily A, Member 4 Pseudogene1 2     Olfactory Receptor OR11-872
Olfactory Receptor-Like Protein JCG52 3     HP23
JCG52     

External Ids:    HGNC: 151301   Entrez Gene: 2832972   Ensembl: ENSG000001707827   UniProtKB: Q9H2093   

Export aliases for OR10A4 gene to outside databases

Previous GC identifers: GC11U990583 GC11P006863 GC11P006854


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for OR10A4 Gene:
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the
perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled
receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain
structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G
protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the
genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent
of other organisms. (provided by RefSeq, Jul 2008)

GeneCards Summary for OR10A4 Gene:
OR10A4 (olfactory receptor, family 10, subfamily A, member 4) is a protein-coding gene. Diseases associated with OR10A4 include neuronitis. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR10C1.

UniProtKB/Swiss-Prot: O10A4_HUMAN, Q9H209
Function: Odorant receptor (Potential). May be involved in taste perception

Gene Wiki entry for OR10A4 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000011.10  NC_018922.2  NT_009237.19  
Regulatory elements:
   Regulatory transcription factor binding sites in the OR10A4 gene promoter:
         Nkx3-1   Max1   GATA-3   Nkx3-1 v1   GATA-1   GATA-2   FAC1   TGIF   c-Myc   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidOR10A4 promoter sequence
   Search Chromatin IP Primers for OR10A4

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OR10A4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15.4   Ensembl cytogenetic band:  11p15.4   HGNC cytogenetic band: 11p15.4

OR10A4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OR10A4 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P006897:  view genomic region     (about GC identifiers)

Start:
6,897,852 bp from pter      End:
6,898,823 bp from pter
Size:
972 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: O10A4_HUMAN, Q9H209 (See protein sequence)
Recommended Name: Olfactory receptor 10A4  
Size: 315 amino acids; 35117 Da
Secondary accessions: B2RNP5 B9EH36 Q96R20

Explore the universe of human proteins at neXtProt for OR10A4: NX_Q9H209

Explore proteomics data for OR10A4 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn5
  • HORDE protein sequence for OR10A4

    See OR10A4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_997069.2  
    ENSEMBL proteins: 
     ENSP00000369157  
    Reactome Protein details: Q9H209

    OR10A4 Human Recombinant Protein Products:

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    Cloud-Clone Corp. CLIAs for OR10A4


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    OR10: GPCR / Class A : Olfactory receptors

    3 InterPro protein domains:
     IPR017452 GPCR_Rhodpsn_7TM
     IPR000725 Olfact_rcpt
     IPR000276 GPCR_Rhodpsn

    Graphical View of Domain Structure for InterPro Entry Q9H209

    ProtoNet protein and cluster: Q9H209

    1 Blocks protein domain: IPB000725 Olfactory receptor signature

    UniProtKB/Swiss-Prot: O10A4_HUMAN, Q9H209
    Similarity: Belongs to the G-protein coupled receptor 1 family


    OR10A4 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: O10A4_HUMAN, Q9H209
    Function: Odorant receptor (Potential). May be involved in taste perception

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004930G-protein coupled receptor activity IEA--
    GO:0004984olfactory receptor activity IEA--
         
    OR10A4 for ontologies           About GeneDecksing


    Phenotypes:
         6 MGI mutant phenotypes (inferred from 16 alleles(MGI details for Olfr17):
     cellular  craniofacial  nervous system  no phenotypic analysis  respiratory system 
     taste/olfaction 

    OR10A4 for phenotypes           About GeneDecksing

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for OR10A4
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for OR10A4
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    O10A4_HUMAN, Q9H209: Cell membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane5
    extracellular2
    chloroplast1
    nucleus1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane TAS--
    GO:0016021integral component of membrane IEA--

    OR10A4 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for OR10A4 About    
    See pathways by source

    SuperPathContained pathways About
    1Olfactory Signaling Pathway
    Olfactory Signaling Pathway0.82
    Olfactory transduction0.82
    2Signaling by GPCR
    Signaling by GPCR0.90
    Signal Transduction0.58
    GPCR downstream signaling0.90
    3Peptide ligand-binding receptors
    GPCRs, Class A Rhodopsin-like0.43

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    1 BioSystems Pathway for OR10A4
        GPCRs, Class A Rhodopsin-like

    1 Reactome Pathway for OR10A4
        Olfactory Signaling Pathway


    1 Kegg Pathway  (Kegg details for OR10A4):
        Olfactory transduction


    OR10A4 for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OR10A4
    Interactions:

        Search GeneGlobe Interaction Network for OR10A4

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for OR10A4 (ENSP000003691574) via UniProtKB, MINT, STRING, and/or I2D (see all 273)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    OR52E6ENSP000003288784STRING: ENSP00000369279 STRING: ENSP00000328878
    OR10J5ENSP000003344414STRING: ENSP00000334441
    OR2K2ENSP000003050554STRING: ENSP00000305055
    OR4F6ENSP000003275254STRING: ENSP00000327525
    OR5AR1ENSP000003026394STRING: ENSP00000302639
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007186G-protein coupled receptor signaling pathway ----
    GO:0007411axon guidance IEA--

    OR10A4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for OR10A4 (O10A4)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for OR10A4 gene: 
    NM_207186.2  

    Unigene Cluster for OR10A4:

    Olfactory receptor, family 10, subfamily A, member 4
    Hs.448685
    Unigene Representative Sequence: NM_207186
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000379829(uc010rat.2)
    miRNA
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      QuantiTect SYBR Green Assays in human, mouse, rat OR10A4
      QuantiFast Probe-based Assays in human, mouse, rat OR10A4

    Additional mRNA sequence: 

    AF209506.1 BC137024.1 BC137027.1 

    1 DOTS entry:

    DT.95080792 

    2 AceView cDNA sequences:

    NM_207186 AF209506 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    OR10A4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    OR10A4 Expression
    About this image

    OR10A4 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    OR10A4 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.448685

    UniProtKB/Swiss-Prot: O10A4_HUMAN, Q9H209
    Tissue specificity: Expressed in the tongue

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for OR10A4 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Olfr171 , 5 olfactory receptor 171, 5 86.24(n)1
    88.25(a)1
      7 (56.10 cM)5
    183141  NM_020598.21  NP_065623.21 
     1070974675 
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    50(a)
    1 → many
    GL343253.1(636431-637411)


    ENSEMBL Gene Tree for OR10A4 (if available)
    TreeFam Gene Tree for OR10A4 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for OR10A4 gene
    OR10C12  OR10P12  OR10A32  OR10AG12  OR10A72  OR10A22  OR10A62  OR10A52  
    Selected SIMAP similar genes for OR10A4 using alignment to 1 protein entry:     O10A4_HUMAN(see all similar genes):
    OR10A2    OR10A5    OR10A3    OR10A7    OR10C1    OR10A6
    OR10P1    OR10J4    OR10T2    OR2C3    OR2K2    OR10J5
    OR10R3P    OR11A1    OR2B2    OR2D2    OR2W6P    OR5V1

    OR10A4 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for OR10A4 (see all 135)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs79304931,2
    C,F,A,H--6895857(+) ctactC/Aaactt 1 -- us2k122Minor allele frequency- A:0.16NS EA NA WA 2766
    rs79295841,2
    C,F,H--6895896(+) aatggG/Atataa 1 -- us2k14Minor allele frequency- A:0.00NS EA 414
    rs27417581,2
    C,F,O,A--6896047(-) CTTCTT/CTTATG 1 -- us2k111Minor allele frequency- C:0.41NA CSA WA EA 503
    rs1875059461,2
    C--6896049(+) TAAAAG/TAAGTG 1 -- us2k10--------
    rs733955161,2
    C,F--6896135(+) TTTACC/TGCCCT 1 -- us2k12Minor allele frequency- T:0.08WA 120
    rs1923560891,2
    --6896164(+) AATTCA/GCTTCT 1 -- us2k10--------
    rs110410731,2
    C,F,H--6896203(+) TCATAT/CTCTCA 1 -- us2k126Minor allele frequency- C:0.28NS EA NA WA CSA 2490
    rs1485658651,2
    C--6896242(+) CTAAAA/TGTTTG 1 -- us2k10--------
    rs1428495311,2
    --6896281(+) CATTGC/TTCTTA 1 -- us2k10--------
    rs1396772961,2
    C--6896309(+) TAACA-/TAAT  
            
    TAATT
    1 -- us2k10--------

    HapMap Linkage Disequilibrium report for OR10A4 ( 6897852 - 6898823 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for OR10A4:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv832061CNV Loss17160897
    nsv825756CNV Loss20364138

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing OR10A4
    DNA2.0 Custom Variant and Variant Library Synthesis for OR10A4

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    1 disease for OR10A4:    
    About MalaCards
    neuronitis


    OR10A4 for disorders           About GeneDecksing


    Export disorders for OR10A4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for OR10A4 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with OR10A4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. DEFOG: a practical scheme for deciphering families of genes. (PubMed id 12213199)1, 2 Fuchs T.... Shamir R. (Genomics 2002)
    2. Genomic analysis of orthologous mouse and human olfactory receptor loci. (PubMed id 11416212)1, 2 Lane R.P.... Trask B.J. (Proc. Natl. Acad. Sci. U.S.A. 2001)
    3. New GPCRs from a human lingual cDNA library. (PubMed id 11705801)1, 2 Gaudin J.-C.... Haertle T. (Chem. Senses 2001)
    4. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
    5. The human olfactory receptor gene family. (PubMed id 14983052)1 Malnic B.... Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 283297 HGNC: 15130 AceView: OR10A4 Ensembl:ENSG00000170782 euGenes: HUgn283297
    ECgene: OR10A4 Kegg: 283297 H-InvDB: OR10A4

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for OR10A4 Pharmacogenomics, SNPs, Pathways
    HORDE entry for OR10A4 The Human Olfactory Receptor Data Explorer at the Weizmann Institute of Science

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for OR10A4 gene:
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