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Aliases for OPN5 Gene

Aliases for OPN5 Gene

  • Opsin 5 2 3 5
  • Transmembrane Protein 13 2 3 4
  • Neuropsin 2 3 4
  • G-Protein Coupled Receptor 136 3 4
  • TMEM13 3 4
  • GPR136 3 4
  • PGR12 3 4
  • G-Protein Coupled Receptor PGR12 4
  • Opsin-5 3
  • GRP136 3

External Ids for OPN5 Gene

Previous HGNC Symbols for OPN5 Gene

  • TMEM13

Previous GeneCards Identifiers for OPN5 Gene

  • GC06P047796
  • GC06P047857
  • GC06P047477

Summaries for OPN5 Gene

Entrez Gene Summary for OPN5 Gene

  • Opsins are members of the guanine nucleotide-binding protein (G protein)-coupled receptor superfamily. This opsin gene is expressed in the eye, brain, testes, and spinal cord. This gene belongs to the seven-exon subfamily of mammalian opsin genes that includes peropsin (RRH) and retinal G protein coupled receptor (RGR). Like these other seven-exon opsin genes, this family member may encode a protein with photoisomerase activity. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2010]

GeneCards Summary for OPN5 Gene

OPN5 (Opsin 5) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Opsins. GO annotations related to this gene include G-protein coupled receptor activity and 11-cis retinal binding. An important paralog of this gene is OPN4.

Gene Wiki entry for OPN5 Gene

Additional gene information for OPN5 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OPN5 Gene

Genomics for OPN5 Gene

Regulatory Elements for OPN5 Gene

Enhancers for OPN5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H047475 1.1 ENCODE 11 -302.2 -302174 5 HDGF ARNT ARID4B SIN3A DMAP1 ZBTB7B SLC30A9 CBX5 SP3 SP5 ENSG00000270761 ADGRF2 CD2AP OPN5 GC06P047489
GH06H047669 1.3 FANTOM5 Ensembl ENCODE 2 -110.0 -109979 2 HDAC1 TBL1XR1 ZSCAN4 ZNF384 EBF1 ZIC2 ZNF2 ZNF366 ZSCAN5C IKZF2 ADGRF2 OPN5 ADGRF4
GH06H047651 1.1 FANTOM5 Ensembl ENCODE 2 -128.7 -128668 1 FOSL1 JUND IKZF1 JUN CEBPB FOS MGA ADGRF2 OPN5 GC06M047647
GH06H047780 0.9 Ensembl ENCODE 0.7 +0.6 600 0 CTCF ZNF654 RFX1 ZSCAN26 TRIM22 REST ZBTB8A ZNF2 RAD21 KLF16 OPN5 GC06P047823
GH06H047787 1.1 Ensembl ENCODE 0.4 +8.6 8553 2 RB1 ZNF2 RAD21 RARA YY1 ZSCAN5C SCRT2 ZNF143 ZNF207 ZNF391 RNU1-105P OPN5 GC06P047823
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OPN5 on UCSC Golden Path with GeneCards custom track

Genomic Location for OPN5 Gene

Chromosome:
6
Start:
47,780,302 bp from pter
End:
47,857,840 bp from pter
Size:
77,539 bases
Orientation:
Plus strand

Genomic View for OPN5 Gene

Genes around OPN5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OPN5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OPN5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OPN5 Gene

Proteins for OPN5 Gene

  • Protein details for OPN5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6U736-OPN5_HUMAN
    Recommended name:
    Opsin-5
    Protein Accession:
    Q6U736
    Secondary Accessions:
    • A0AV33
    • Q5T5B9
    • Q5T886
    • Q7Z603
    • Q86SL5

    Protein attributes for OPN5 Gene

    Size:
    354 amino acids
    Molecular mass:
    39727 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI20454.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for OPN5 Gene

Post-translational modifications for OPN5 Gene

  • It is uncertain whether Cys-315 or Cys-316 is palmitoylated.
  • Glycosylation at posLast=44
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for OPN5 Gene

Domains & Families for OPN5 Gene

Gene Families for OPN5 Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • G-protein coupled receptors
  • Predicted membrane proteins

Protein Domains for OPN5 Gene

Suggested Antigen Peptide Sequences for OPN5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6U736

UniProtKB/Swiss-Prot:

OPN5_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
Family:
  • Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.
genes like me logo Genes that share domains with OPN5: view

Function for OPN5 Gene

Phenotypes From GWAS Catalog for OPN5 Gene

Gene Ontology (GO) - Molecular Function for OPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004871 signal transducer activity IEA --
GO:0004930 G-protein coupled receptor activity IEA --
GO:0005502 11-cis retinal binding IEA --
GO:0008020 G-protein coupled photoreceptor activity IBA --
GO:0009881 photoreceptor activity IEA --
genes like me logo Genes that share ontologies with OPN5: view
genes like me logo Genes that share phenotypes with OPN5: view

Animal Models for OPN5 Gene

MGI Knock Outs for OPN5:

Animal Model Products

  • Taconic Biosciences Mouse Models for OPN5

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for OPN5
  • Applied Biological Materials Clones for OPN5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for OPN5 Gene

Localization for OPN5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OPN5 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OPN5 gene
Compartment Confidence
plasma membrane 3

Gene Ontology (GO) - Cellular Components for OPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001750 photoreceptor outer segment IBA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OPN5: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for OPN5 Gene

Pathways & Interactions for OPN5 Gene

genes like me logo Genes that share pathways with OPN5: view

Gene Ontology (GO) - Biological Process for OPN5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0007601 visual perception IEA --
GO:0007602 phototransduction IEA --
GO:0009584 detection of visible light IEA --
genes like me logo Genes that share ontologies with OPN5: view

No data available for SIGNOR curated interactions for OPN5 Gene

Drugs & Compounds for OPN5 Gene

No Compound Related Data Available

Transcripts for OPN5 Gene

mRNA/cDNA for OPN5 Gene

Unigene Clusters for OPN5 Gene

Opsin 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for OPN5
  • Applied Biological Materials Clones for OPN5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for OPN5 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b
SP1: - - -
SP2:
SP3: - - - -
SP4:
SP5: -

Relevant External Links for OPN5 Gene

GeneLoc Exon Structure for
OPN5
ECgene alternative splicing isoforms for
OPN5

Expression for OPN5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OPN5 Gene

mRNA differential expression in normal tissues according to GTEx for OPN5 Gene

This gene is overexpressed in Testis (x39.8) and Heart - Left Ventricle (x4.9).

NURSA nuclear receptor signaling pathways regulating expression of OPN5 Gene:

OPN5

SOURCE GeneReport for Unigene cluster for OPN5 Gene:

Hs.213717

mRNA Expression by UniProt/SwissProt for OPN5 Gene:

Q6U736-OPN5_HUMAN
Tissue specificity: Detected in brain and retina and cell lines derived from neural retina.
genes like me logo Genes that share expression patterns with OPN5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OPN5 Gene

Orthologs for OPN5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for OPN5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OPN5 33 34
  • 99.81 (n)
dog
(Canis familiaris)
Mammalia OPN5 33 34
  • 94.03 (n)
cow
(Bos Taurus)
Mammalia OPN5 33 34
  • 92.9 (n)
mouse
(Mus musculus)
Mammalia Opn5 33 16 34
  • 89.96 (n)
rat
(Rattus norvegicus)
Mammalia Opn5 33
  • 88.28 (n)
oppossum
(Monodelphis domestica)
Mammalia OPN5 34
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia OPN5 34
  • 83 (a)
OneToOne
chicken
(Gallus gallus)
Aves OPN5 33 34
  • 74.95 (n)
lizard
(Anolis carolinensis)
Reptilia OPN5 34
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia opn5 33
  • 72.9 (n)
zebrafish
(Danio rerio)
Actinopterygii opn5 33 34
  • 67.15 (n)
Species where no ortholog for OPN5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for OPN5 Gene

ENSEMBL:
Gene Tree for OPN5 (if available)
TreeFam:
Gene Tree for OPN5 (if available)

Paralogs for OPN5 Gene

Paralogs for OPN5 Gene

(3) SIMAP similar genes for OPN5 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with OPN5: view

Variants for OPN5 Gene

Sequence variations from dbSNP and Humsavar for OPN5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000023136 -- 47,780,826(+) CGAAG(A/G)TGAAT upstream-variant-2KB
rs1000030318 -- 47,821,933(+) TATGG(C/T)AAAAC intron-variant
rs1000097851 -- 47,805,954(+) AATCC(C/T)CAAGG intron-variant
rs1000198570 -- 47,823,390(+) AGAAG(A/T)TACGT intron-variant
rs1000271561 -- 47,798,498(+) ATGAA(A/G)TGTAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OPN5 Gene

Variant ID Type Subtype PubMed ID
esv3305039 CNV mobile element insertion 20981092
esv3324219 CNV insertion 20981092
nsv1017113 CNV gain 25217958

Variation tolerance for OPN5 Gene

Residual Variation Intolerance Score: 26.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.90; 18.64% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OPN5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OPN5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OPN5 Gene

Disorders for OPN5 Gene

Relevant External Links for OPN5

Genetic Association Database (GAD)
OPN5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OPN5

No disorders were found for OPN5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OPN5 Gene

Publications for OPN5 Gene

  1. Seven evolutionarily conserved human rhodopsin G protein-coupled receptors lacking close relatives. (PMID: 14623098) Fredriksson R … Schiöth HB (FEBS letters 2003) 2 3 4 60
  2. Neuropsin (Opn5): a novel opsin identified in mammalian neural tissue. (PMID: 14623103) Tarttelin EE … Lucas RJ (FEBS letters 2003) 2 3 4 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 3 4 60
  5. The G protein-coupled receptor repertoires of human and mouse. (PMID: 12679517) Vassilatis DK … Gaitanaris GA (Proceedings of the National Academy of Sciences of the United States of America 2003) 3 4 60

Products for OPN5 Gene

  • Addgene plasmids for OPN5

Sources for OPN5 Gene

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