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Aliases for OPA1-AS1 Gene

Subcategory (RNA class) for OPA1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OPA1-AS1 Gene

  • OPA1 Antisense RNA 1 2 3 5
  • OPA1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OPA1-AS1 Gene

Previous GeneCards Identifiers for OPA1-AS1 Gene

  • GC00U933583
  • GC03M193337

Summaries for OPA1-AS1 Gene

GeneCards Summary for OPA1-AS1 Gene

OPA1-AS1 (OPA1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OPA1-AS1 Gene

Genomics for OPA1-AS1 Gene

Regulatory Elements for OPA1-AS1 Gene

Enhancers for OPA1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F194002 0.2 ENCODE 21 -376.6 -376647 3.5 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF143 FOS ZNF263 LSG1 OPA1-AS1 ENSG00000232874 HES1 LINC02026 ENSG00000276407
GH03F194314 0.5 Ensembl ENCODE 21 -688.3 -688281 1.8 CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF143 KLF13 ZNF263 SP3 LSG1 OPA1-AS1 HES1 ENSG00000232874 GP5 LINC00887 GC03P194342 GC03P194343 GC03P194344 GC03P194345
GH03F194484 1.3 FANTOM5 ENCODE 21 -860.3 -860339 6.1 PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A YY1 FOS ZNF263 LSG1 OPA1-AS1 RNU6-1101P GP5 ATP13A3 HES1 LINC00884
GH03F194069 0.5 ENCODE 11.8 -443.9 -443890 4.2 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 LSG1 OPA1-AS1 ENSG00000232874 HES1 FAM43A LINC02028 ENSG00000229334 LRRC15 ENSG00000229964
GH03F194583 0.5 ENCODE 11.8 -957.0 -957041 2.3 HDGF CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 MXD4 LSG1 RNU6ATAC24P TMEM44-AS1 OPA1-AS1 LOC105374291
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around OPA1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OPA1-AS1 Gene

Chromosome:
3
Start:
193,618,599 bp from pter
End:
193,627,337 bp from pter
Size:
8,739 bases
Orientation:
Minus strand

Genomic View for OPA1-AS1 Gene

Genes around OPA1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OPA1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OPA1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OPA1-AS1 Gene

Proteins for OPA1-AS1 Gene

Post-translational modifications for OPA1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OPA1-AS1 Gene

Domains & Families for OPA1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OPA1-AS1 Gene

Function for OPA1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OPA1-AS1 Gene

Localization for OPA1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OPA1-AS1 Gene

Pathways & Interactions for OPA1-AS1 Gene

SuperPathways for OPA1-AS1 Gene

No Data Available

Interacting Proteins for OPA1-AS1 Gene

Gene Ontology (GO) - Biological Process for OPA1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OPA1-AS1 Gene

Transcripts for OPA1-AS1 Gene

mRNA/cDNA for OPA1-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OPA1-AS1 Gene

OPA1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OPA1-AS1 Gene

No ASD Table

Relevant External Links for OPA1-AS1 Gene

GeneLoc Exon Structure for
OPA1-AS1
ECgene alternative splicing isoforms for
OPA1-AS1

Expression for OPA1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OPA1-AS1 Gene

SOURCE GeneReport for Unigene cluster for OPA1-AS1 Gene:

Hs.679364
genes like me logo Genes that share expression patterns with OPA1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OPA1-AS1 Gene

Orthologs for OPA1-AS1 Gene

Evolution for OPA1-AS1 Gene

ENSEMBL:
Gene Tree for OPA1-AS1 (if available)
TreeFam:
Gene Tree for OPA1-AS1 (if available)

No data available for Orthologs for OPA1-AS1 Gene

Paralogs for OPA1-AS1 Gene

No data available for Paralogs for OPA1-AS1 Gene

Variants for OPA1-AS1 Gene

Sequence variations from dbSNP and Humsavar for OPA1-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs138350727 Pathogenic 193,626,153(+) AGCGC(A/G/T)CAGAG intron-variant, nc-transcript-variant, reference, missense
rs569675223 Likely benign 193,618,877(+) CTCCG(A/C/G)AAGAA nc-transcript-variant, reference, missense
rs114348597 Benign 193,626,084(+) GAACT(C/T)GTGGC intron-variant
rs34307082 Benign 193,618,887(-) TAAAC(A/G)CCGTT nc-transcript-variant, reference, missense
rs3772393 Benign 193,618,850(-) ATGCA(A/G)CCCTT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for OPA1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2759212 CNV gain 17122850

Relevant External Links for OPA1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OPA1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OPA1-AS1 Gene

Disorders for OPA1-AS1 Gene

Relevant External Links for OPA1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OPA1-AS1

No disorders were found for OPA1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OPA1-AS1 Gene

Publications for OPA1-AS1 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for OPA1-AS1 Gene

Sources for OPA1-AS1 Gene

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