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Aliases for OOEP-AS1 Gene

Subcategory (RNA class) for OOEP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OOEP-AS1 Gene

  • OOEP Antisense RNA 1 2 3 5
  • OOEP Antisense RNA 1 (Non-Protein Coding) 2 3
  • OOEP Antisense RNA (Non-Protein Coding) 2 3
  • OOEP-AS 3

External Ids for OOEP-AS1 Gene

Previous HGNC Symbols for OOEP-AS1 Gene

  • OOEP-AS

Previous GeneCards Identifiers for OOEP-AS1 Gene

  • GC00U931570
  • GC06P074082

Summaries for OOEP-AS1 Gene

GeneCards Summary for OOEP-AS1 Gene

OOEP-AS1 (OOEP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OOEP-AS1 Gene

Genomics for OOEP-AS1 Gene

Regulatory Elements for OOEP-AS1 Gene

Enhancers for OOEP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F073513 1.2 ENCODE 16.2 +149.4 149425 11.3 CREB3L1 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 TBX21 ZFP41 EIF3EP1 OOEP-AS1 SLC17A5 MTO1 DDX43 OOEP KHDC1P1 KCNQ5-AS1 GC06M073517 GC06M073519
GH06F073308 1 ENCODE 16.3 -59.9 -59942 1.7 ATF1 PKNOX1 CREB3L1 SIN3A FEZF1 BRCA1 ZNF2 ZNF121 GLIS2 ZNF143 EIF3EP1 OOEP-AS1 KHDC1P1 KCNQ5-AS1 KHDC1
GH06F073421 1.1 Ensembl ENCODE 11.3 +52.7 52734 2.0 TBP HDAC1 PKNOX1 CBX3 ATF1 CREM ZBTB11 CREB3 SMARCA4 HMBOX1 OOEP DDX43 RPS6P8 RPL39P3 OOEP-AS1 MB21D1
GH06F073348 0.5 ENCODE 11.2 -20.4 -20366 2.2 BCL11A POU5F1 KDM1A OOEP-AS1 RPL39P3 OOEP KHDC1 RPS6P8 DDX43 MTO1 SLC17A5 DPPA5 PAICSP3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OOEP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OOEP-AS1 Gene

Chromosome:
6
Start:
73,369,704 bp from pter
End:
73,387,717 bp from pter
Size:
18,014 bases
Orientation:
Plus strand

Genomic View for OOEP-AS1 Gene

Genes around OOEP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OOEP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OOEP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OOEP-AS1 Gene

Proteins for OOEP-AS1 Gene

Post-translational modifications for OOEP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OOEP-AS1 Gene

Domains & Families for OOEP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OOEP-AS1 Gene

Function for OOEP-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OOEP-AS1 Gene

Localization for OOEP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OOEP-AS1 Gene

Pathways & Interactions for OOEP-AS1 Gene

SuperPathways for OOEP-AS1 Gene

No Data Available

Interacting Proteins for OOEP-AS1 Gene

Gene Ontology (GO) - Biological Process for OOEP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OOEP-AS1 Gene

Transcripts for OOEP-AS1 Gene

mRNA/cDNA for OOEP-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OOEP-AS1 Gene

No ASD Table

Relevant External Links for OOEP-AS1 Gene

GeneLoc Exon Structure for
OOEP-AS1
ECgene alternative splicing isoforms for
OOEP-AS1

Expression for OOEP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OOEP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OOEP-AS1 Gene

This gene is overexpressed in Testis (x33.1).
genes like me logo Genes that share expression patterns with OOEP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OOEP-AS1 Gene

Orthologs for OOEP-AS1 Gene

Evolution for OOEP-AS1 Gene

ENSEMBL:
Gene Tree for OOEP-AS1 (if available)
TreeFam:
Gene Tree for OOEP-AS1 (if available)

No data available for Orthologs for OOEP-AS1 Gene

Paralogs for OOEP-AS1 Gene

No data available for Paralogs for OOEP-AS1 Gene

Variants for OOEP-AS1 Gene

Sequence variations from dbSNP and Humsavar for OOEP-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10494 -- 73,373,113(-) TGGGT(C/T)TATAA intron-variant
rs10622359 -- 73,389,023(+) ATGCG(-/AAGGA)GAAGC nc-transcript-variant
rs10679584 -- 73,389,026(+) CGAAG(-/GAAAG)CCGCG nc-transcript-variant
rs10805972 -- 73,371,772(+) aaaaa(A/T)aaaaa intron-variant, upstream-variant-2KB
rs10943091 -- 73,371,773(+) aaaat(A/T)aaaaa intron-variant, upstream-variant-2KB

Relevant External Links for OOEP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OOEP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OOEP-AS1 Gene

Disorders for OOEP-AS1 Gene

No disorders were found for OOEP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for OOEP-AS1 Gene

Publications for OOEP-AS1 Gene

No publications were found for OOEP-AS1 Gene.

Products for OOEP-AS1 Gene

Sources for OOEP-AS1 Gene

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