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OOEP Gene

protein-coding   GIFtS: 36
GCID: GC06M074079

Oocyte Expressed Protein

(Previous names: chromosome 6 open reading frame 156, oocyte expressed protein...)
(Previous symbol: C6orf156)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Oocyte Expressed Protein1 2     Chromosome 6 Open Reading Frame 1561
C6orf1561 2 3     FLOPED2
KHDC22 3 5     HOEP192
Oocyte Expressed Protein Homolog (Dog)1 2     Oocyte And Embryo Protein 192
KH Homology Domain Containing 21 2     Oocyte-Expressed Protein Homolog2
Oocyte- And Embryo-Specific Protein 192 3     OEP193
KH Homology Domain-Containing Protein 22 3     hOEP193

External Ids:    HGNC: 213821   Entrez Gene: 4411612   Ensembl: ENSG000002039077   OMIM: 6116895   UniProtKB: A6NGQ23   

Export aliases for OOEP gene to outside databases

Previous GC identifers: GC06M074137 GC06M071276


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for OOEP Gene:
OOEP (oocyte expressed protein) is a protein-coding gene. Diseases associated with OOEP include endotheliitis. GO annotations related to this gene include RNA binding. An important paralog of this gene is KHDC3L.

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2
Function: As a member of the subcortical maternal complex (SCMC), plays an essential role for zygotes to progress
beyond the first embryonic cell divisions (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the OOEP gene promoter:
         POU3F1   FOXJ2 (long isoform)   AP-4   IRF-1   FOXJ2   GATA-1   GATA-2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat OOEP


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q13   Ensembl cytogenetic band:  6q13   HGNC cytogenetic band: 6q13

OOEP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OOEP gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M074079:  view genomic region     (about GC identifiers)

Start:
74,078,278 bp from pter      End:
74,104,856 bp from pter
Size:
26,579 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
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UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2 (See protein sequence)
Recommended Name: Oocyte-expressed protein homolog  
Size: 149 amino acids; 17170 Da
Subunit: Component of the SCMC which also includes at least NLRP5 and TLE6 (By similarity)
Secondary accessions: A6NIN5 A9UIB7

Explore the universe of human proteins at neXtProt for OOEP: NX_A6NGQ2

Explore proteomics data for OOEP at MOPED


See OOEP Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001073976.1  
ENSEMBL proteins: 
 ENSP00000359388   ENSP00000359384   ENSP00000397430  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: A6NGQ2

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2
Domain: Contains an atypical KH domain with amino acid changes at critical sites, suggesting that it may not bind
RNA
Similarity: Belongs to the KHDC1 family
Similarity: Contains 1 KH domain


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: OOEP_HUMAN, A6NGQ2
Function: As a member of the subcortical maternal complex (SCMC), plays an essential role for zygotes to progress
beyond the first embryonic cell divisions (By similarity)

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003723RNA binding IEA--
GO:0005515protein binding ----
     
OOEP for ontologies           About GeneDecksing


Phenotypes:
     3 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Ooep):
 embryogenesis  other  reproductive system 

OOEP for phenotypes           About GeneDecksing

Animal Models:
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
OOEP_HUMAN, A6NGQ2: Cytoplasm (By similarity). Note=In the subcortical cytoplasm of early embryos from the
1-cell to the blastocyst stages. From the 2-cell stage, still detected in the subcortex, but excluded from
cell-cell contact regions (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
nucleus2
extracellular1

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005938cell cortex IEA--
GO:0043234protein complex IEA--
GO:0045177apical part of cell IEA--

OOEP for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for OOEP
Interactions:

    Search GeneGlobe Interaction Network for OOEP

STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

4 Interacting proteins for OOEP (A6NGQ23 ENSP000003593844) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
KHDC3LQ587J83, ENSP000003593924I2D: score=1 STRING: ENSP00000359392
TLE6Q9H8083, ENSP000002461124I2D: score=3 STRING: ENSP00000246112
NLRP5P590473, ENSP000003750634I2D: score=3 STRING: ENSP00000375063
TLE1ENSP000003656824STRING: ENSP00000365682
About this table

Gene Ontology (GO): Selected biological process terms (see all 7):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001701in utero embryonic development IEA--
GO:0006468protein phosphorylation IEA--
GO:0007566embryo implantation IEA--
GO:0009566fertilization IEA--
GO:0009880embryonic pattern specification IEA--

OOEP for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for OOEP



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for OOEP gene: 
NM_001080507.2  

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000370363(uc003pgu.4 uc003pgv.4) ENST00000370359 ENST00000441145

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1 AceView cDNA sequence:

BC024931 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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OOEP expression in normal human tissues (normalized intensities)      OOEP embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCTGGCAGAC
OOEP Expression
About this image


OOEP expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 5) fully expand
 
 Ovary (Reproductive System)    fully expand to see all 2 entries
         Secondary Oocyte Antral Follicle
         Secondary follicles
 
 Endothelium (Cardiovascular System)
         Adult Endothelial Cells Blood Brain Barrier
 
 Gonad
         Secondary Oocyte Antral Follicle
 
 Brain (Nervous System)
         Adult Endothelial Cells Blood Brain Barrier
 
 Testis (Reproductive System)
OOEP Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

OOEP Protein Expression
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for OOEP gene from Selected species (see all 4)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Ooep1 , 5 oocyte expressed protein1, 5 68.21(n)1
54.63(a)1
  9 (43.65 cM)5
679681  NM_026480.31  NP_080756.11 
 783761095 


ENSEMBL Gene Tree for OOEP (if available)
TreeFam Gene Tree for OOEP (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for OOEP gene
KHDC3L2  
2 SIMAP similar genes for OOEP using alignment to 3 protein entries:     OOEP_HUMAN (see all proteins):
DPPA5    KHDC3L

OOEP for paralogs           About GeneDecksing


4 Pseudogenes.org Pseudogenes for OOEP
PGOHUM00000238674 PGOHUM00000239832 PGOHUM00000244129 PGOHUM00000241241


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for OOEP (see all 107)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 6 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs583471211,2
C--74077792(+) TGACCG/ACCCAG 1 -- int13Minor allele frequency- A:0.09WA EA 240
rs560880091,2
C--74077817(+) ACGTCA/GTCCTC 1 -- int13Minor allele frequency- G:0.09WA EA 240
rs1923913071,2
--74077829(+) GCCCAA/GTGGAT 1 -- int10--------
rs571340531,2
C--74077870(+) CTCTTC/TGGGGG 1 -- int13Minor allele frequency- T:0.09WA EA 240
rs120558011,2
C,H--74077888(+) ACCAGC/TTtcaa 1 -- int14Minor allele frequency- T:0.00NS EA 420
rs1830536041,2
--74077896(+) CAAAGC/TGAGAG 1 -- int10--------
rs5228581,2
C,F,A,H--74077969(-) GTACTG/TTTGGG 1 -- int112Minor allele frequency- T:0.10NA WA CSA EA 374
rs1511769891,2
--74078123(+) TATCCA/GCTCCC 1 -- int10--------
rs1875020501,2
--74078296(+) CTTTAC/TTATAA 1 -- ut310--------
rs1995954761,2
C--74078328(+) TTTGGA/CAAAAT 1 -- ut310--------

HapMap Linkage Disequilibrium report for OOEP (74078278 - 74104856 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for OOEP:    About this table    
Variant IDTypeSubtypePubMed ID
nsv830693CNV Loss17160897

Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 611689    OMIM disorders: --

1 disease for OOEP:    About MalaCards
endotheliitis


OOEP for disorders           About GeneDecksing


Export disorders for OOEP gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for OOEP gene integrated from 10 sources:
(articles sorted by number of sources associating them with OOEP)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Atypical structure and phylogenomic evolution of the new eutherian oocyte-and embryo-expressed KHDC1/DPPA5/ECAT1/OOEP gene family. (PubMed id 17913455)1, 2, 3 Pierre A.... Monget P. (Genomics 2007)
  2. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (Nature 2003)
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  4. The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (Science 2001)
  5. (PubMed id )2 

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 441161 HGNC: 21382 AceView: LOC441161 Ensembl:ENSG00000203907 euGenes: HUgn441161
ECgene: OOEP H-InvDB: OOEP

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for OOEP Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for OOEP gene:
Search GeneIP for patents involving OOEP

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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