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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

OOEP Gene

protein-coding GIFtS: 36
GCID: GC06M074079

oocyte expressed protein

(Previous names: chromosome 6 open reading frame 156, oocyte expressed protein...)
(Previous symbol: C6orf156)

Search for OOEP
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Oocyte Expressed Protein¹ ²		FLOPED²
KHDC2¹ ² ³ ⁵		HOEP19²
C6orf156¹ ² ³		KH Homology Domain Containing 2²
Oocyte Expressed Protein Homolog (Dog)¹ ²		Oocyte And Embryo Protein 19²
Oocyte- And Embryo-Specific Protein 19² ³		Oocyte-Expressed Protein Homolog²
KH Homology Domain-Containing Protein 2² ³		OEP19³
Em:AC019205.2¹		HOEP19²
Chromosome 6 Open Reading Frame 156¹

External Ids:	HGNC: 21382¹	Entrez Gene: 441161²	Ensembl: ENSG00000203907⁷	OMIM: 611689⁵	UniProtKB: A6NGQ2³

Export aliases for OOEP gene to outside databases

Previous GC identifers: GC06M074137 GC06M071276

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2

Function: As a member of the subcortical maternal complex (SCMC), plays an essential role for zygotes to progress

beyond the first embryonic cell divisions (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000006.11 NC_018917.1 NT_007299.13

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the OOEP gene promoter:
POU3F1 FOXJ2 (long isoform) AP-4 IRF-1 FOXJ2 GATA-1 GATA-2
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

Search SABiosciences Chromatin IP Primers for OOEP

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OOEP

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q13 Ensembl cytogenetic band: 6q13 HGNC cytogenetic band: 6q13

OOEP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OOEP gene location

GeneLoc information about chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06M074079: view genomic region (about GC identifiers)

Start:	74,078,278 bp from pter	End:	74,104,856 bp from pter
Size:	26,579 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2 (See protein sequence)

Recommended Name: Oocyte-expressed protein homolog

Size: 149 amino acids; 17170 Da

Subunit: Component of the SCMC which also includes at least NLRP5 and TLE6 (By similarity)

Subcellular location: Cytoplasm (By similarity). Note=In the subcortical cytoplasm of early embryos from the 1-cell to

the blastocyst stages. From the 2-cell stage, still detected in the subcortex, but excluded from cell-cell contact

regions (By similarity)

Secondary accessions: A6NIN5 A9UIB7

Explore the universe of human proteins at neXtProt for OOEP: NX_A6NGQ2

OOEP Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_001073976.1

ENSEMBL proteins:

ENSP00000359388 ENSP00000359384 ENSP00000397430

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Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005938	cell cortex	IEA	--
GO:0043234	protein complex	IEA	--
GO:0045177	apical part of cell	IEA	--

OOEP for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: A6NGQ2

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2

Domain: Contains an atypical KH domain with amino acid changes at critical sites, suggesting that it may not bind RNA

Similarity: Belongs to the KHDC1 family

Similarity: Contains 1 KH domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2

Function: As a member of the subcortical maternal complex (SCMC), plays an essential role for zygotes to progress

beyond the first embryonic cell divisions (By similarity)

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Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003723	RNA binding	IEA	--
GO:0005515	protein binding	--	--

OOEP for ontologies About GeneDecksing

Animal Models:
3 MGI mutant phenotypes (inferred from 2 alleles) (MGI details for Ooep):

embryogenesis

other

reproductive system

OOEP for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for OOEP

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

3 Interacting proteins for OOEP (A6NGQ2³ ENSP00000359384⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TLE6	Q9H808³, ENSP00000246112⁴	I2D: score=3 STRING: ENSP00000246112
NLRP5	P59047³, ENSP00000375063⁴	I2D: score=3 STRING: ENSP00000375063
KHDC3L	Q587J8³	I2D: score=1

About this table

Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001701	in utero embryonic development	IEA	--
GO:0006468	protein phosphorylation	IEA	--
GO:0007566	embryo implantation	IEA	--
GO:0009566	fertilization	IEA	--
GO:0009880	embryonic pattern specification	IEA	--

OOEP for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for OOEP
Search CenterWatch for drugs/clinical trials and news about OOEP

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

REFSEQ mRNAs for OOEP gene:

NM_001080507.2

Unigene Cluster for OOEP:

Oocyte expressed protein

Hs.671212 [show with all ESTs]

Unigene Representative Sequence: BX361312

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000370363(uc003pgu.4 uc003pgv.4) ENST00000370359 ENST00000441145

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Additional cDNA sequence:

BC024931.1 EU290647.1

2 DOTS entries:

DT.100705283 DT.400485

1 AceView cDNA sequence:

BC024931

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

OOEP expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GCTGGCAGAC

About this image

OOEP expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Ovary

Antral Follicle

Secondary Oocyte

Female Gametocytes, Germ Cells

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 2 LifeMap Cells

Name

Category

Sox17-GFP genetically modified stem cells (Embryonic Stem Cell)

Early Embryo, Inner Cell Mass

Secondary follicles (Primary Cell)

Ovary, Reproductive System

See OOEP Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for OOEP

SOURCE GeneReport for Unigene cluster: Hs.671212

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for OOEP gene from 1/4 species (see all 4) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Ooep^{1 , 5}	oocyte expressed protein^{1, 5}	68.85(n)¹ 55.14(a)¹		9 (43.65 cM)⁵ 67968¹ NM_026480.3¹ NP_080756.1¹ 78376109⁵

ENSEMBL Gene Tree for OOEP (if available)
TreeFam Gene Tree for OOEP (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for OOEP gene

KHDC3L²

2 SIMAP similar genes for OOEP using alignment to 3 protein entries: OOEP_HUMAN (see all proteins):

DPPA5 KHDC3L

OOEP for paralogs About GeneDecksing

4 Pseudogenes.org Pseudogenes for OOEP
PGOHUM00000238674 PGOHUM00000239832 PGOHUM00000244129 PGOHUM00000241241

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 6 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs58347121^1,2	C,	--	74077792(+)	`TGACCG/ACCCAG`	1	--	int¹		3		WA EA	240
rs56088009^1,2	C,	--	74077817(+)	`ACGTCA/GTCCTC`	1	--	int¹		3		WA EA	240
rs192391307^1,2		--	74077829(+)	`GCCCAA/GTGGAT`	1	--	int¹		0	--	--	--	--
rs57134053^1,2	C,	--	74077870(+)	`CTCTTC/TGGGGG`	1	--	int¹		3		WA EA	240
rs12055801^1,2	C,H	--	74077888(+)	`ACCAGC/TTTCAA`	1	--	int¹		4		NS EA	420
rs183053604^1,2		--	74077896(+)	`CAAAGC/TGAGAG`	1	--	int¹		0	--	--	--	--
rs522858^1,2	C,F,A,H,	--	74077969(-)	`GTACTG/TTTGGG`	1	--	int¹		12		NA WA CSA EA	374
rs151176989^1,2		--	74078123(+)	`TATCCA/GCTCCC`	1	--	int¹		0	--	--	--	--
rs187502050^1,2		--	74078296(+)	`CTTTAC/TTATAA`	1	--	ut3¹		0	--	--	--	--
rs199595476^1,2	C	--	74078328(+)	`TTTGGA/CAAAAT`	1	--	ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for OOEP (74078278 - 74104856 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for OOEP: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

OOEP for disorders About MalaCards

OOEP for disorders About GeneDecksing

OMIM gene information: 611689 OMIM disorders: --

Export disorders for OOEP gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for OOEP gene integrated from 9 sources:
(articles sorted by number of sources associating them with OOEP)

Utopia: connect your pdf to the dynamic
world of online information

Atypical structure and phylogenomic evolution of the new eutherian oocyte-and embryo-expressed KHDC1/DPPA5/ECAT1/OOEP gene family. (PubMed id 17913455)^{1, 2, 3} Pierre A.... Monget P. (2007)
The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)² Mungall A.J.... Beck S. (2003)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
The sequence of the human genome. (PubMed id 11181995)¹ Venter J.C.... Zhu X. (2001)
Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )² Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 441161	HGNC: 21382	AceView: LOC441161	Ensembl:ENSG00000203907	euGenes: HUgn441161
ECgene: OOEP	H-InvDB: OOEP

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for OOEP	Pharmacogenomics, SNPs, Pathways

Intellectual Property for OOEP gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for OOEP gene:
Search GeneIP for patents involving OOEP

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes OOEP gene at Home site.

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OOEP Gene

oocyte expressed protein

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Export list of displayed genes

OOEP Gene

oocyte expressed protein

Aliasesfor OOEP gene

Summariesfor OOEP gene

Genomic Viewsfor OOEP gene

Proteinsfor OOEP gene

Protein Domains /Familiesfor OOEP gene

Functionfor OOEP gene

Pathways & Interactionsfor OOEP gene

Drugs & Compoundsfor OOEP gene

Transcriptsfor OOEP gene

Expression for OOEP gene

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Genome Databases showing OOEP gene

Other Databases showing OOEP gene

Specialized Databases showing OOEP gene

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View Random Gene

Aliases
for OOEP gene

Summaries
for OOEP gene

Genomic Views
for OOEP gene

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for OOEP gene

Protein Domains /
Families
for OOEP gene

Function
for OOEP gene

Pathways & Interactions
for OOEP gene

Drugs & Compounds
for OOEP gene

Transcripts
for OOEP gene

Expression
for OOEP gene

Orthologs
for OOEP gene

Paralogs
for OOEP gene

Genomic Variants
for OOEP gene

Disorders / Diseases
for OOEP gene

Publications
for OOEP gene

Intellectual Property
for OOEP gene

Products
for OOEP gene