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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

OOEP Gene

protein-coding   GIFtS: 37
GCID: GC06M074079

Oocyte Expressed Protein

(Previous names: chromosome 6 open reading frame 156, oocyte expressed protein...)
(Previous symbol: C6orf156)
  Search for OOEP
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Oocyte Expressed Protein1 2     Chromosome 6 Open Reading Frame 1561
C6orf1561 2 3     FLOPED2
KHDC22 3 5     HOEP192
Oocyte Expressed Protein Homolog (Dog)1 2     Oocyte And Embryo Protein 192
KH Homology Domain Containing 21 2     Oocyte-Expressed Protein Homolog2
Oocyte- And Embryo-Specific Protein 192 3     OEP193
KH Homology Domain-Containing Protein 22 3     hOEP193

External Ids:    HGNC: 213821   Entrez Gene: 4411612   Ensembl: ENSG000002039077   OMIM: 6116895   UniProtKB: A6NGQ23   

Export aliases for OOEP gene to outside databases

Previous GC identifers: GC06M074137 GC06M071276


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for OOEP Gene: 
OOEP (oocyte expressed protein) is a protein-coding gene. GO annotations related to this gene include RNA binding. An important paralog of this gene is KHDC3L.

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2
Function: As a member of the subcortical maternal complex (SCMC), plays an essential role for zygotes to progress
beyond the first embryonic cell divisions (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.2  NT_007299.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the OOEP gene promoter:
         POU3F1   FOXJ2 (long isoform)   AP-4   IRF-1   FOXJ2   GATA-1   GATA-2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for OOEP

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OOEP


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q13   Ensembl cytogenetic band:  6q13   HGNC cytogenetic band: 6q13

OOEP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OOEP gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M074079:  view genomic region     (about GC identifiers)

Start:
74,078,278 bp from pter      End:
74,104,856 bp from pter
Size:
26,579 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2 (See protein sequence)
Recommended Name: Oocyte-expressed protein homolog  
Size: 149 amino acids; 17170 Da
Subunit: Component of the SCMC which also includes at least NLRP5 and TLE6 (By similarity)
Subcellular location: Cytoplasm (By similarity). Note=In the subcortical cytoplasm of early embryos from the
1-cell to the blastocyst stages. From the 2-cell stage, still detected in the subcortex, but excluded from
cell-cell contact regions (By similarity)
Secondary accessions: A6NIN5 A9UIB7

Explore the universe of human proteins at neXtProt for OOEP: NX_A6NGQ2

Explore proteomics data for OOEP at MOPED 

OOEP Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

OOEP Protein Expression

REFSEQ proteins: NP_001073976.1  
ENSEMBL proteins: 
 ENSP00000359388   ENSP00000359384   ENSP00000397430  

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Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005938cell cortex IEA--
GO:0043234protein complex IEA--
GO:0045177apical part of cell IEA--

OOEP for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: A6NGQ2

UniProtKB/Swiss-Prot: OOEP_HUMAN, A6NGQ2
Domain: Contains an atypical KH domain with amino acid changes at critical sites, suggesting that it may not bind
RNA
Similarity: Belongs to the KHDC1 family
Similarity: Contains 1 KH domain


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: OOEP_HUMAN, A6NGQ2
Function: As a member of the subcortical maternal complex (SCMC), plays an essential role for zygotes to progress
beyond the first embryonic cell divisions (By similarity)

     Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003723RNA binding IEA--
GO:0005515protein binding ----
     
OOEP for ontologies           About GeneDecksing


Phenotypes:
     3 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Ooep):
 embryogenesis  other  reproductive system 

OOEP for phenotypes           About GeneDecksing

Animal Models:
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OOEP

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

3 Interacting proteins for OOEP (A6NGQ23 ENSP000003593844) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
TLE6Q9H8083, ENSP000002461124I2D: score=3 STRING: ENSP00000246112
NLRP5P590473, ENSP000003750634I2D: score=3 STRING: ENSP00000375063
KHDC3LQ587J83I2D: score=1 
About this table

Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001701in utero embryonic development IEA--
GO:0006468protein phosphorylation IEA--
GO:0007566embryo implantation IEA--
GO:0009566fertilization IEA--
GO:0009880embryonic pattern specification IEA--

OOEP for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for OOEP

Search CenterWatch for drugs/clinical trials and news about OOEP

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for OOEP gene: 
NM_001080507.2  

Unigene Cluster for OOEP:

Oocyte expressed protein
Hs.671212  [show with all ESTs]
Unigene Representative Sequence: BX361312
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000370363(uc003pgu.4 uc003pgv.4) ENST00000370359 ENST00000441145

miRNA
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Inhib. RNA
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  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OOEP

Additional mRNA sequence: 

BC024931.1 EU290647.1 

2 DOTS entries:

DT.100705283  DT.400485 

1 AceView cDNA sequence:

BC024931 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

OOEP expression in normal human tissues (normalized intensities)      OOEP embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCTGGCAGAC
OOEP Expression
About this image


OOEP expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database 
 5/13 selected tissues (see all 13) fully expand
 
 Ovary (Reproductive System)    fully expand to see all 2 entries
         Secondary Oocyte Antral Follicle
         Secondary follicles
 
 Nose (Sensory Organs)    fully expand to see all 2 entries
         sensory organ/nose/nasal cavity   
 
 Testis (Reproductive System)
         sperm   
 
 Blood Brain Barrier (Nervous System)
         Adult Endothelial Cells Blood Brain Barrier
 
 Inner Cell Mass (Early Embryonic Tissues)
         Sox17-GFP genetically modified stem cells

See OOEP Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for OOEP

SOURCE GeneReport for Unigene cluster: Hs.671212
    SABiosciences Custom PCR Arrays for OOEP
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QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OOEP
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OOEP

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for OOEP gene from 1/4 species (see all 4)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Ooep1 , 5 oocyte expressed protein1, 5 68.85(n)1
55.14(a)1
  9 (43.65 cM)5
679681  NM_026480.31  NP_080756.11 
 783761095 


ENSEMBL Gene Tree for OOEP (if available)
TreeFam Gene Tree for OOEP (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for OOEP gene
KHDC3L2  
2 SIMAP similar genes for OOEP using alignment to 3 protein entries:     OOEP_HUMAN (see all proteins):
DPPA5    KHDC3L

OOEP for paralogs           About GeneDecksing


4 Pseudogenes.org Pseudogenes for OOEP
PGOHUM00000238674 PGOHUM00000239832 PGOHUM00000244129 PGOHUM00000241241


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/107 SNPs in OOEP are shown (see all 107)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 6 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs583471211,2
C--74077792(+) TGACCG/ACCCAG 1 -- int13Minor allele frequency- A:0.09WA EA 240
rs560880091,2
C--74077817(+) ACGTCA/GTCCTC 1 -- int13Minor allele frequency- G:0.09WA EA 240
rs1923913071,2
--74077829(+) GCCCAA/GTGGAT 1 -- int10--------
rs571340531,2
C--74077870(+) CTCTTC/TGGGGG 1 -- int13Minor allele frequency- T:0.09WA EA 240
rs120558011,2
C,H--74077888(+) ACCAGC/TTtcaa 1 -- int14Minor allele frequency- T:0.00NS EA 420
rs1830536041,2
--74077896(+) CAAAGC/TGAGAG 1 -- int10--------
rs5228581,2
C,F,A,H--74077969(-) GTACTG/TTTGGG 1 -- int112Minor allele frequency- T:0.10NA WA CSA EA 374
rs1511769891,2
--74078123(+) TATCCA/GCTCCC 1 -- int10--------
rs1875020501,2
--74078296(+) CTTTAC/TTATAA 1 -- ut310--------
rs1995954761,2
C--74078328(+) TTTGGA/CAAAAT 1 -- ut310--------

HapMap Linkage Disequilibrium report for OOEP (74078278 - 74104856 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for OOEP:    About this table     
Variant IDTypeSubtypePubMed ID
nsv830693CNV Loss17160897

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

OOEP for disorders           About MalaCards
OMIM gene information: 611689    OMIM disorders: --


OOEP for disorders           About GeneDecksing


Export disorders for OOEP gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for OOEP gene integrated from 9 sources:
(articles sorted by number of sources associating them with OOEP)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Atypical structure and phylogenomic evolution of the new eutherian oocyte-and embryo-expressed KHDC1/DPPA5/ECAT1/OOEP gene family. (PubMed id 17913455)1, 2, 3 Pierre A.... Monget P. (2007)
  2. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)2 Mungall A.J.... Beck S. (2003)
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  4. The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (2001)
  5. Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id )2 Aoki H.... Hino O. (2000)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 441161 HGNC: 21382 AceView: LOC441161 Ensembl:ENSG00000203907 euGenes: HUgn441161
ECgene: OOEP H-InvDB: OOEP

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for OOEP Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for OOEP gene:
Search GeneIP for patents involving OOEP

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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