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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

OLIG3 Gene

protein-coding   GIFtS: 52
GCID: GC06M137855

oligodendrocyte transcription factor 3

 Explore 4 diseases affiliated with
OLIG3 via our new
 Human Malady Compendium 
Biological research products
for OLIG3
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Oligodendrocyte Transcription Factor 31 2     BHLHB73 5
BHLHe201     Oligo33
Bhlhb71 2     BHLHE203
Class B Basic Helix-Loop-Helix Protein 72 3     Oligo33
Class E Basic Helix-Loop-Helix Protein 202 3     BHLHb71

External Ids:    HGNC: 180031   Entrez Gene: 1678262   Ensembl: ENSG000001774687   OMIM: 6093235   UniProtKB: Q7RTU33   

Export aliases for OLIG3 gene to outside databases

Previous GC identifers: GC06M137660 GC06M137793 GC06M135375


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: OLIG3_HUMAN, Q7RTU3
Function: May determine the distinct specification program of class A neurons in the dorsal part of the spinal cord and
suppress specification of class B neurons




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.1  NT_025741.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the OLIG3 gene promoter:
         SRF   Nkx3-1   Nkx3-1 v4   SRF (504 AA)   CUTL1   Nkx3-1 v1   HNF-1A   Nkx3-1 v2   HNF-1   Nkx3-1 v3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidOLIG3 promoter sequence
   Search SABiosciences Chromatin IP Primers for OLIG3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat OLIG3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q23.3   Ensembl cytogenetic band:  6q23.3   HGNC cytogenetic band: 6q23.3

OLIG3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
OLIG3 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M137855:  view genomic region     (about GC identifiers)

Start:
137,813,336 bp from pter      End:
137,815,531 bp from pter
Size:
2,196 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: OLIG3_HUMAN, Q7RTU3 (See protein sequence)
Recommended Name: Oligodendrocyte transcription factor 3  
Size: 272 amino acids; 29358 Da
Subcellular location: Nucleus (By similarity)
Sequence caution: Sequence=DAA00303.1; Type=Erroneous initiation;
Secondary accessions: Q8N8Q0

Explore the universe of human proteins at neXtProt for OLIG3: NX_Q7RTU3

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q7RTU3

  • OLIG3 Protein expression data from MOPED and PaxDb:    About this image 
    OLIG3 Protein Expression
    REFSEQ proteins: NP_786923.1  
    ENSEMBL proteins: 
     ENSP00000356708  

    Human Recombinant Protein Products for OLIG3: 
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    Uscn Proteins for OLIG3

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    OLIG3 for ontologies           About GeneDecksing



    OLIG3 Antibody Products: 
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    Uscn ELISAs and CLIAs for OLIG3


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    OLIG3 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR011598 HLH_dom

    Graphical View of Domain Structure for InterPro Entry Q7RTU3

    ProtoNet protein and cluster: Q7RTU3

    1 Blocks protein family: IPB001092 Basic helix-loop-helix dimerization domain bHLH

    UniProtKB/Swiss-Prot: OLIG3_HUMAN, Q7RTU3
    Similarity: Contains 1 bHLH (basic helix-loop-helix) domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: OLIG3_HUMAN, Q7RTU3
    Function: May determine the distinct specification program of class A neurons in the dorsal part of the spinal cord and
    suppress specification of class B neurons

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding IEA--
    GO:0046983protein dimerization activity IEA--
         
    OLIG3 for ontologies           About GeneDecksing


    Phenotypes:
         6 MGI mutant phenotypes (inferred from 5 alleles(MGI details for Olig3):
     cellular  homeostasis/metabolism  mortality/aging  nervous system  no phenotypic analysis 
     respiratory system 

    OLIG3 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Olig3tm1Qiu for OLIG3
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for OLIG3 

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat OLIG3
    8/41 QIAGEN miScript miRNA Assays for microRNAs that regulate OLIG3 (see all 41):
    hsa-miR-579 hsa-miR-19b-2* hsa-miR-200a hsa-miR-485-3p hsa-miR-605 hsa-miR-3074-3p hsa-miR-624 hsa-miR-507
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    Inhib. RNA
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    Gene Editing
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    Clone
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    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OLIG3


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Neural Crest Differentiation
    Neural Crest Differentiation1.00


    1 BioSystems Pathway for OLIG3 
        Neural Crest Differentiation


    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OLIG3

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for OLIG3 (Q7RTU33 ENSP000003567084) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TCF12Q990813, ENSP000003310574I2D: score=2 STRING: ENSP00000331057
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0006355regulation of transcription, DNA-dependent IEA--

    OLIG3 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for OLIG3
    Search CenterWatch for drugs/clinical trials and news about OLIG3 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for OLIG3 gene: 
    NM_175747.2  

    Unigene Cluster for OLIG3:

    Oligodendrocyte transcription factor 3
    Hs.195398  [show with all ESTs]
    Unigene Representative Sequence: BC051352
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000367734(uc003qhp.1)

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat OLIG3
    8/41 QIAGEN miScript miRNA Assays for microRNAs that regulate OLIG3 (see all 41):
    hsa-miR-579 hsa-miR-19b-2* hsa-miR-200a hsa-miR-485-3p hsa-miR-605 hsa-miR-3074-3p hsa-miR-624 hsa-miR-507
    SwitchGear 3'UTR luciferase reporter plasmidOLIG3 3' UTR sequence
    Inhib. RNA
    Products:
         
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    Sirion Biotech Custom design and validation of potent shRNA sequences against OLIG3 
    Clone
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat OLIG3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat OLIG3

    Additional cDNA sequence: 

    AK096362.1 BC051352.1 

    1 DOTS entry:

    DT.100019023 

    10 AceView cDNA sequences:

    BC051352 AK096362 BX111291 NM_175747 BU855346 AI952817 BU556497 AI990825 
    CA337059 AI656498 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    OLIG3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CGGGGTTGGC
    OLIG3 Expression
    About this image

    OLIG3 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Neuroectoderm cells (Generation of human ...)
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See OLIG3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for OLIG3

    SOURCE GeneReport for Unigene cluster: Hs.195398
        SABiosciences Custom PCR Arrays for OLIG3
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OLIG3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for OLIG3 gene from 4/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves LOC1008579191 oligodendrocyte transcription factor 3-like 83.76(n)
    87.45(a)
      100857919  XM_003640920.1  XP_003640968.1 
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.111452 Transcribed sequence with weak similarity to protein more 74.28(n)    137712979 
    zebrafish
    (Danio rerio)
    Actinopterygii olig31 oligodendrocyte transcription factor 3 73.33(n)
    74.9(a)
      566728  NM_001110393.1  NP_001103863.1 
    worm
    (Caenorhabditis elegans)
    Secernentea hlh-166
    Helix Loop Helix family member (hlh-16)
    29(a)
    1 → many
    I(8767013-8768022)


    ENSEMBL Gene Tree for OLIG3 (if available)
    TreeFam Gene Tree for OLIG3 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for OLIG3 gene
    BHLHE222  BHLHE232  OLIG12  OLIG22  
    2 SIMAP similar genes for OLIG3 using alignment to 1 protein entry:     OLIG3_HUMAN:
    BHLHE23    OLIG2

    OLIG3 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/111 NCBI SNPs in OLIG3 are shown (see all 111    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1502066511,2
    C--137812866(+) AGTAT-/TTGACTAT
    TTTCTAAGAG
    TTGAC
    1 -- ds50010--------
    rs1861757341,2
    --137813036(+) TTCCTG/TCCACT 1 -- ds50010--------
    rs729874401,2
    C--137813077(+) ATTCTC/TGAGTT 1 -- ds50010--------
    rs94947881,2
    F--137813078(+) TTCTCG/CAGTTT 1 -- ds50011Minor allele frequency- C:0.03WA 118
    rs561377931,2
    C--137813095(+) GTCTGA/GTTACT 1 -- ds50013Minor allele frequency- G:0.12WA NA 240
    rs743453921,2
    C,F--137813124(+) ATAGCA/GTAATA 1 -- ds50012Minor allele frequency- G:0.12WA NA 238
    rs1833957711,2
    --137813179(+) AAATCA/GGCACC 1 -- ds50010--------
    rs1161211211,2
    C,F--137813193(+) TTACCC/TATCCT 1 -- ds50011Minor allele frequency- T:0.02WA 118
    rs1889299121,2
    --137813380(+) GAAACA/TCTGGT 1 -- ut310--------
    rs1927025281,2
    --137813413(+) ATCAAG/TAATAT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for OLIG3 (137813336 - 137815531 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for OLIG3: --

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    OLIG3 for disorders           About GeneDecksing

    OMIM gene information: 609323    OMIM disorders: --

    4 diseases for OLIG3:    About MalaCards
    rheumatoid arthritis    multiple sclerosis    arthritis    neuronitis

    1 disease from the University of Copenhagen DISEASES database for OLIG3:
    Rheumatoid arthritis
    Human Genome Epidemiology (HuGE) Navigator: OLIG3 (8 documents)

    Export disorders for OLIG3 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for OLIG3 gene, integrated from 9 sources (see all 18):
    (articles sorted by number of sources associating them with OLIG3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
    4. Exhaustive identification of human class II basic helix-loop-helix proteins by virtual library screening. (PubMed id 14516699)1, 2 McLellan A.S.... Kealey T. (2002)
    5. A protein array screen for Kaposi's sarcoma-associated herpesvirus LANA interactors links LANA to TIP60, PP2A activity, and telomere s hortening. (PubMed id 22379092)1 Shamay M....Hayward S.D. (2012)
    6. Genetic risk and a primary role for cell-mediated immu ne mechanisms in multiple sclerosis. (PubMed id 21833088)1  ....Compston A. (2011)
    7. Genetic variants in the prediction of rheumatoid arth ritis. (PubMed id 20439292)1 van der Helm-van Mil A.H....Huizinga T.W. (2010)
    8. A genetic marker at the OLIG3/TNFAIP3 locus associate s with methotrexate continuation in early inflammatory polyarthritis: results f rom the Norfolk Arthritis Register. (PubMed id 20921970)1 Plant D....Thomson W. (2010)
    9. A regulatory variant in CCR6 is associated with rheum atoid arthritis susceptibility. (PubMed id 20453841)1 Kochi Y....Yamamoto K. (2010)
    10. Genome-wide searching of rare genetic variants in WTC CC data. (PubMed id 20549515)1 Feng T. and Zhu X. (2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 167826 HGNC: 18003 AceView: OLIG3 Ensembl:ENSG00000177468 euGenes: HUgn167826
    ECgene: OLIG3 H-InvDB: OLIG3

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for OLIG3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for OLIG3 gene:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
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     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
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    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 13 May 2013

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    von Willebrand factor
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