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Aliases & Descriptions for OLIG2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BHLHB1 2 , 3 OLIGO2 1 , 2 OTTHUMP00000067569 2 OTTHUMP00000067570 2 Oligo2 3 PRKCBP2 2 , 3 , 5 RACK17 1 , 2 , 3 bHLHB1 3 bHLHe19 1 , 2
Descriptions Class B basic helix-loop-helix protein 1 3 Protein kinase C-binding protein 2 3 Protein kinase C-binding protein RACK17 3 basic domain, helix-loop-helix protein, class B, 1 2 human protein kinase C-binding protein RACK17 2 oligodendrocyte lineage transcription factor 2 2 oligodendrocyte-specific bHLH transcription factor 2 2 protein kinase C binding protein 2 1 , 2
Search outside databases for aliases for OLIG2 genePrevious GC identifers: GC21P030975 GC21P033318
Summaries for OLIG2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for OLIG2 : This gene encodes a basic helix-loop-helix transcription factor which is expressed inoligodendroglial tumors of the brain. The protein is an essential regulator of ventralneuroectodermal progenitor cell fate. The gene is involved in a chromosomal translocationt(14;21)(q11.2;q22) associated with T-cell acute lymphoblastic leukemia. Its chromosomal locationis within a region of chromosome 21 which has been suggested to play a role in learning deficitsassociated with Down syndrome. [provided by RefSeq] UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516 Function : Required for oligodendrocyte and motor neuron specification in the spinal cord, as wellas for the development of somatic motor neurons in the hindbrain. Cooperates with OLIG1 toestablish the pMN domain of the embryonic neural tube. Antagonist of V2 interneuron and ofNKX2-2-induced V3 interneuron development (By similarity)
Gene Wiki entry for OLIG2
Genomic Location for OLIG2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the OLIG2 gene Entrez Gene cytogenetic band: 21q22.11 Ensembl cytogenetic band: 21q22.11 HGNC cytogenetic band: 21q22.11 OLIG2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 21 GeneLoc Exon Structure
GeneLoc location for GC21P033320:
(about GC identifiers )
Start:
33,320,109 bp from pter
End:
33,323,374 bp from pter
Size:
3,266 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000021.7 NT_011512.10 Proteins for OLIG2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516 (See
protein sequence )Recommended Name: Oligodendrocyte transcription factor 2 Size : 323 amino acids; 32385 Da
Subunit : Interacts with NKX2-2 (By similarity)
Subcellular location : Nucleus (By similarity). Cytoplasm (By similarity). Note=The NLS contained inthe bHLH domain could be masked in the native form and translocation to the nucleus could bemediated by interaction either with class E bHLH partner protein or with NKX2-2 (By similarity)
Secondary accessions : B3KRF3 Q86X04 Q9NZ14
REFSEQ proteins: NP_005797.1 ENSEMBL proteins: ENSP00000331040 ENSP00000371794 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for OLIG2: Assays for OLIG2:
Protein
Domains/ Families for OLIG2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q13516 ProtoNet protein and cluster: Q13516
2 Blocks protein families : IPB000408 Regulator of chromosome condensation IPB001092 Basic helix-loop-helix dimerization domain bHLH UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516 Domain : The bHLH is essential for interaction with NKX2-2 (By similarity)Similarity : Contains 1 basic helix-loop-helix (bHLH) domain
Gene Function for OLIG2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005806 Applied Biosystems Silencer ® siRNAs for OLIG2 Sigma-Aldrich siRNA for OLIG2 Sigma-Aldrich shRNA for OLIG2 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005806                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005806                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_005806  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005806 UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516 Function : Required for oligodendrocyte and motor neuron specification in the spinal cord, as wellas for the development of somatic motor neurons in the hindbrain. Cooperates with OLIG1 toestablish the pMN domain of the embryonic neural tube. Antagonist of V2 interneuron and ofNKX2-2-induced V3 interneuron development (By similarity) Induction : By SHH. Also induced by NKX6-1 in the developing spinal cord, but not in the rostralhindbrain (By similarity)
9 MGI mutant phenotypes (inferred from 6 alleles ) (MGI details for Olig2) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
IEA -- GO:0003705 RNA polymerase II transcription factor activity, enhancer binding
IEA -- GO:0005515 protein binding
IEA -- GO:0030528 transcription regulator activity
IEA -- GO:0042803 protein homodimerization activity
IEA --
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Pathways & Interactions for OLIG2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for OLIG2 5/26 Interacting proteins for OLIG2 (ENSP00000331040 3 ) via UniProtKB, MINT, and/or STRING (see all 26
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
GO ID Qualified GO term Evidence PubMed IDs GO:0000122 negative regulation of transcription from RNA polymerase II promoter
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0007275 multicellular organismal development
IEA -- GO:0007399 nervous system development
IEA -- GO:0021530 spinal cord oligodendrocyte cell fate specification
IEA --
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Drugs & Compounds for OLIG2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for OLIG2
Transcripts for OLIG2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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shRNA from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005806 Sigma-Aldrich siRNA for OLIG2 Sigma-Aldrich shRNA for OLIG2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005806
REFSEQ mRNAs for OLIG2 gene: NM_005806.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005806
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005806                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005806                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_005806  
Additional cDNA sequence: AF221520.1 AK091462.1 BC034681.1 BC036245.1 BC036275.1 BC047511.1 U48250.1
7 DOTS entries : DT.85105306 DT.91651057 DT.95119479 DT.121132166 DT.121132151 DT.80101759 DT.95363865
24/88 AceView cDNA sequences (see all 88
):AI536683 AK091462 AI360012 BG910423 AI566559 AW510628 BG820341 NM_005806 BG820163 AI277362 BG819627 BF346679 BG910780 AI560252 AI566781 AI553817 BC047511 BI544712 BI597080 AU130620 BM548653 BF515096 BX461924 BQ067265
highest scoring ESTs for OLIG2 :U48250 AA488119 AA757419 AI088733 AI207909 AI277362 AI360012 AI363845 AI369652 AI375346
Unigene Cluster for OLIG2: Oligodendrocyte lineage transcription factor 2 Hs.176977 [show with all ESTs ] Unigene Representative Sequence: BC036245 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000333337
ENST00000382357
Expression for OLIG2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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OLIG2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for OLIG2 1 / 2 / 3
6 probe-sets matching OLIG2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTGGGGATTCSOURCE GeneReport for Unigene cluster: Hs.176977 Expression variation in blood from EXPOLDB for OLIG2
UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516 Tissue specificity : Expressed in the brain, in oligodendrocytes. Strongly expressed inoligodendrogliomas, while expression is weak to moderate in astrocytomas. Expression inglioblastomas highly variable
Orthologs for OLIG2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for OLIG2 gene from 5 species
About this table Species with no ortholog for OLIG2 ENSEMBL Gene Tree for OLIG2 Paralogs for OLIG2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for OLIG2 gene BHLHE22 2 OLIG3 2 OLIG1 2 BHLHE23 2
SNPs/Variants for OLIG2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for OLIG2 (up to first 250kb)
Disorders & Mutations for OLIG2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 606386 UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516
A chromosomal aberration involving OLIG2 may be a cause of a form of T-cell acutelymphoblastic leukemia (T-ALL). Translocation t(14;21)(q11.2;q22) with TCRA
10/14 Novoseek disease relationships for OLIG2 gene (see all 14
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
oligodendroglial tumors
84.11
5
16598485 (1), 15111318 (1), 12924709 (1), 17415208 (1) (see all 5 )
oligodendroglioma
80.80
14
14575240 (3), 18552083 (2), 14730454 (2), 12924709 (1) (see all 10 )
anaplastic oligodendroglioma
75.00
6
14575240 (3), 14730454 (1), 15198128 (1)
neurocytoma central
68.47
5
17257132 (5)
pilocytic astrocytoma
64.41
3
12924709 (1), 18312545 (1), 17442061 (1)
astrocytoma
63.55
10
18552083 (2), 15198128 (2), 16598485 (1), 17146289 (1) (see all 7 )
glioblastoma
61.92
8
14575240 (2), 14730454 (1), 15198128 (1), 15164981 (1) (see all 6 )
anaplastic astrocytoma
59.41
5
14575240 (2), 14730454 (1), 17917751 (1), 17415208 (1)
glioma
53.54
22
14575240 (5), 15198128 (4), 15634232 (2), 18282166 (2) (see all 7 )
demyelination
52.75
2
15519240 (2)
About this table Human Genome Epidemiology Navigator: OLIG2 (4 documents)
Medical News for OLIG2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for OLIG2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/106 PubMed articles for OLIG2 gene (see all 106
): Oligodendrocyte lineage genes (OLIG) as molecular markers for human glial brain tumors. (PubMed id 11526205) 2, 3, 4 Lu Q.R.... Black P.M. (2001) The t(14;21)(q11.2;q22) chromosomal translocation associated with T- cell acute lymphoblastic leukemia activates the BHLHB1 gene. (PubMed id 10737801) 1, 3, 4 Wang J.... Aplan P.D. (2000) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) OLIG2 as a specific marker of oligodendroglial tumour cells. (PubMed id 11498220) 3, 4 Marie Y.... Hoang-Xuan K. (2001) OLIG2 (BHLHB1), a bHLH transcription factor, contributes to leukemogenesis in concert with LMO1. (PubMed id 16103065) 1, 3 Lin Y.W....Aplan P.D. (2005) The oligodendroglial lineage marker OLIG2 is universally expressed in diffuse gliomas. (PubMed id 15198128) 1, 3 Ligon K.L....Rowitch D.H. (2004) A genetic family-based association study of OLIG2 in obsessive-compulsive disorder. (PubMed id 17283288) 1, 3 Stewart S.E....Pauls D.L. (2007) Evidence for motoneuron lineage-specific regulation of Olig2 in the vertebrate neural tube. (PubMed id 16469306) 1, 3 Sun T....Rowitch D.H. (2006) Olig transcription factors are expressed in oligodendrocyte and neuronal cells in human fetal CNS. (PubMed id 16267213) 1, 3 Jakovcevski I. and Zecevic N. (2005)
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Genome Databases showing OLIG2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing OLIG2
(According to HUGE )
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Specialized Databases showing OLIG2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for OLIG2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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