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OLIG2 Gene

protein-coding   GIFtS: 59

GC21P033320
oligodendrocyte lineage transcription factor 2
(Previous name: protein kinase C binding protein 2 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbols: PRKCBP2, BHLHB1)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
BHLHB1 2, 3
OLIGO2 1, 2
OTTHUMP00000067569 2
OTTHUMP00000067570 2
Oligo2 3
PRKCBP2 2, 3, 5
RACK17 1, 2, 3
bHLHB1 3
bHLHe19 1, 2
Descriptions
Class B basic helix-loop-helix protein 1 3
Protein kinase C-binding protein 2 3
Protein kinase C-binding protein RACK17 3
basic domain, helix-loop-helix protein, class B, 1 2
human protein kinase C-binding protein RACK17 2
oligodendrocyte lineage transcription factor 2 2
oligodendrocyte-specific bHLH transcription factor 2 2
protein kinase C binding protein 2 1, 2
External Ids
HGNC: 93981
Entrez Gene: 102152
UniProtKB: Q135163
Ensembl: ENSG000002059277
Search outside databases for aliases for OLIG2 gene

Previous GC identifers: GC21P030975 GC21P033318

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for OLIG2:
This gene encodes a basic helix-loop-helix transcription factor which is expressed in
oligodendroglial tumors of the brain. The protein is an essential regulator of ventral
neuroectodermal progenitor cell fate. The gene is involved in a chromosomal translocation
t(14;21)(q11.2;q22) associated with T-cell acute lymphoblastic leukemia. Its chromosomal location
is within a region of chromosome 21 which has been suggested to play a role in learning deficits
associated with Down syndrome. [provided by RefSeq]

UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516
Function: Required for oligodendrocyte and motor neuron specification in the spinal cord, as well
as for the development of somatic motor neurons in the hindbrain. Cooperates with OLIG1 to
establish the pMN domain of the embryonic neural tube. Antagonist of V2 interneuron and of
NKX2-2-induced V3 interneuron development (By similarity)

Gene Wiki entry for OLIG2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the OLIG2 gene  

Entrez Gene cytogenetic band: 21q22.11   Ensembl cytogenetic band:  21q22.11   HGNC cytogenetic band: 21q22.11

OLIG2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 21         GeneLoc Exon Structure

GeneLoc location for GC21P033320:     (about GC identifiers)

Start:
33,320,109 bp from pter
End:
33,323,374 bp from pter
Size:
3,266 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000021.7  NT_011512.10  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516 (See protein sequence)
Recommended Name: Oligodendrocyte transcription factor 2  
Size: 323 amino acids; 32385 Da
Subunit: Interacts with NKX2-2 (By similarity)
Subcellular location: Nucleus (By similarity). Cytoplasm (By similarity). Note=The NLS contained in
the bHLH domain could be masked in the native form and translocation to the nucleus could be
mediated by interaction either with class E bHLH partner protein or with NKX2-2 (By similarity)
Secondary accessions: B3KRF3 Q86X04 Q9NZ14

REFSEQ proteins: NP_005797.1  

ENSEMBL proteins: 
ENSP00000331040 ENSP00000371794 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (Olig2)
Human Recombinant Proteins from Abnova (OLIG2)
                Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005634 nucleus IEA--
GO:0005737 cytoplasm IEA--
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Antibodies for OLIG2: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of OLIG2
Sigma-Aldrich Antibodies for OLIG2
R&D Systems Antibodies for OLIG2
Antibodies from Abcam (Olig2), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (OLIG2)
Novus Biologicals Antibodies for OLIG2

Assays for OLIG2: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro domains/families:
 IPR001092 HLH_basic
 IPR011598 HLH_DNA_bd


   GeneDecks  OLIG2 for the domains selected above  
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Graphical View of Domain Structure for InterPro Entry Q13516

ProtoNet protein and cluster: Q13516

2 Blocks protein families:
IPB000408 Regulator of chromosome condensation
IPB001092 Basic helix-loop-helix dimerization domain bHLH


UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516
Domain: The bHLH is essential for interaction with NKX2-2 (By similarity)
Similarity: Contains 1 basic helix-loop-helix (bHLH) domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (OLIG2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (OLIG2)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005806

              Applied Biosystems Silencer® siRNAs for OLIG2

              Sigma-Aldrich siRNA for OLIG2  
                     Sigma-Aldrich shRNA for OLIG2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for OLIG2
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005806
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005806
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_005806 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_005806

UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516
Function: Required for oligodendrocyte and motor neuron specification in the spinal cord, as well
as for the development of somatic motor neurons in the hindbrain. Cooperates with OLIG1 to
establish the pMN domain of the embryonic neural tube. Antagonist of V2 interneuron and of
NKX2-2-induced V3 interneuron development (By similarity)
Induction: By SHH. Also induced by NKX6-1 in the developing spinal cord, but not in the rostral
hindbrain (By similarity)

9 MGI mutant phenotypes (inferred from 6 alleles(MGI details for Olig2):

behavior/neurologicalgrowth/sizelethality-prenatal/perinatallife span-post-weaning/agingmuscle
nervous systemno phenotypic analysisrespiratory systemtumorigenesis

5 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0003677 DNA binding IEA--
GO:0003705 RNA polymerase II transcription factor activity, enhancer binding IEA--
GO:0005515 protein binding IEA--
GO:0030528 transcription regulator activity IEA--
GO:0042803 protein homodimerization activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Millipore Pathway for OLIG2
 Transcription factors in neurogenesis

   GeneDecks  OLIG2 for the pathways selected above  
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 Gene Network CentralTM Interacting Genes and Proteins Network for  OLIG2 


5/26 Interacting proteins for OLIG2 (ENSP000003310403) via UniProtKB, MINT, and/or STRING (see all 26 )
InteractantInteraction Details
GeneCardExternal ID(s)
NKX2-2ENSP000003663473STRING (score=.981)
SOX10ENSP000003541303STRING (score=.976)
SHHENSP000002972613STRING (score=.952)
PHOX2BENSP000002263823STRING (score=.944)
SIM1ENSP000002629013STRING (score=.936)
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5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA--
GO:0006355 regulation of transcription, DNA-dependent IEA--
GO:0007275 multicellular organismal development IEA--
GO:0007399 nervous system development IEA--
GO:0021530 spinal cord oligodendrocyte cell fate specification IEA--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for OLIG2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (OLIG2)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (OLIG2)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005806

              Sigma-Aldrich siRNA for OLIG2  
                     Sigma-Aldrich shRNA for OLIG2  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_005806  

REFSEQ mRNAs for OLIG2 gene: 

NM_005806.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_005806  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005806
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005806
                                 untagged cDNA clones in CMV expression vector (see all 2): NM_005806 

Additional cDNA sequence: 

AF221520.1 AK091462.1 BC034681.1 BC036245.1 BC036275.1 BC047511.1 U48250.1 

7 DOTS entries:

DT.85105306  DT.91651057  DT.95119479  DT.121132166  DT.121132151  DT.80101759  DT.95363865 

24/88 AceView cDNA sequences (see all 88 ):

AI536683 AK091462 AI360012 BG910423 AI566559 AW510628 BG820341 NM_005806 
BG820163 AI277362 BG819627 BF346679 BG910780 AI560252 AI566781 AI553817 
BC047511 BI544712 BI597080 AU130620 BM548653 BF515096 BX461924 BQ067265 

highest scoring ESTs for OLIG2:

U48250 AA488119 AA757419 AI088733 AI207909 AI277362 AI360012 AI363845 AI369652 AI375346 

Unigene Cluster for OLIG2:

Oligodendrocyte lineage transcription factor 2
Hs.176977  [show with all ESTs]
Unigene Representative Sequence: BC036245


GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:
ENST00000333337  ENST00000382357  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

OLIG2 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for OLIG2

1 / 2 / 3

6 probe-sets matching OLIG2 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
40624_at2, 3 U95-A 1 1.00 1.00 0.99 1.19 U48250 1.00 0.80 0.91 1
841_at2, 3 U95-A 1 1.00 1.00 0.99 0.85 U48250 1.00 0.80 0.91 1

213825_at2, 3 U133-A 1 1.00 1.00 -- -- AA757419 0.80 0.88 0.84 1

213824_at2, 3 U133-A 1 1.00 1.00 -- -- AI870776 0.80 0.88 0.84 1

213825_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

213824_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
GeneDecks  OLIG2 for binary patterns associated with the probe-sets selected above  
About GeneDecksing
About this table    
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: GTGGGGATTC

SOURCE GeneReport for Unigene cluster: Hs.176977

Expression variation in blood from EXPOLDB for OLIG2

UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516
Tissue specificity: Expressed in the brain, in oligodendrocytes. Strongly expressed in
oligodendrogliomas, while expression is weak to moderate in astrocytomas. Expression in
glioblastomas highly variable

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for OLIG2 gene from 5 species
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
OLIG21   -- oligodendrocyte lineage transcription factor 2 99.28(n)
100(a)
749928  XM_001172282.1  XP_001172282.1 
rat
(Rattus norvegicus)
Olig21   -- oligodendrocyte lineage transcription factor 2 88.44(n)
96.28(a)
304103  XM_221668.4  XP_221668.4 
mouse
(Mus musculus)
Olig21, 5 16 (63.00 cM)5
oligodendrocyte transcription factor 21, 5 88.13(n)1
96.28(a)1
509131  NM_016967.21  NP_058663.21 
 AB0386975  AF2329295  (see all 11)
zebrafish
(Danio rerio)
AF442964.12   --   -- 77.29(n) 325288  AF442964.1 
African clawed frog
(Xenopus laevis)
Xl.151932   -- Xenopus laevis transcribed sequence with weak similarity more 74.04(n)  BJ037458.1 
About this table        Species with no ortholog for OLIG2

ENSEMBL Gene Tree for OLIG2
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for OLIG2 gene
BHLHE222  OLIG32  OLIG12  BHLHE232  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/31 NCBI SNPs in OLIG2 are shown (see all 31 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 37)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 21 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
rs65171371,2
A,C,F,H33322649(+) CACCCT/CCTTAG 1 -- ut318Minor allele frequency- C:0.26EU EA WA 836
rs65171351,2
A,C,F,H33319441(+) GGCCAT/CCTCCT 1 -- ng51 tfbs32Minor allele frequency- C:0.19EA 178
--
rs65171361,2
A,C,F,H33322358(+) CTAAAA/TACTTC 1 -- ut314Minor allele frequency- T:0.07EU EA WA 412
rs10590041,2
A,F33322333(+) CGACCA/CCCACC 1 -- ut31 ese31Minor allele frequency- C:0.47MN 184
--
rs72783431,2
A33323435(+) TTGGGA/GCCGGA 1 -- ng310--------
--
rs20091301,2
A33320048(+) GCCCCC/GGCCAC 1 -- ng51 ese30--------
rs96537111,2
A33323819(+) GAGCCC/GTAGCG 1 -- ng310--------
rs119089711,2
C33318150(+) CCCCCC/TCGCTC 1 -- ng510--------
rs99750391,2
C33318462(+) TGAAGA/GCCAAT 1 -- ng51 tfbs30--------
rs7621781,2
A,C,F,H33321271(+) AAGTCA/GTCCTC 1 S/S syn15Minor allele frequency- G:0.43MN EU EA WA 604
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HapMap Linkage Disequilibrium images for OLIG2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 606386

UniProtKB/Swiss-Prot: OLIG2_HUMAN, Q13516
  • A chromosomal aberration involving OLIG2 may be a cause of a form of T-cell acute
    lymphoblastic leukemia (T-ALL). Translocation t(14;21)(q11.2;q22) with TCRA
  • 10/14 Novoseek disease relationships for OLIG2 gene (see all 14 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    oligodendroglial tumors 84.11 5 16598485 (1), 15111318 (1), 12924709 (1), 17415208 (1) (see all 5)
    oligodendroglioma 80.80 14 14575240 (3), 18552083 (2), 14730454 (2), 12924709 (1) (see all 10)
    anaplastic oligodendroglioma 75.00 6 14575240 (3), 14730454 (1), 15198128 (1)
    neurocytoma central 68.47 5 17257132 (5)
    pilocytic astrocytoma 64.41 3 12924709 (1), 18312545 (1), 17442061 (1)
    astrocytoma 63.55 10 18552083 (2), 15198128 (2), 16598485 (1), 17146289 (1) (see all 7)
    glioblastoma 61.92 8 14575240 (2), 14730454 (1), 15198128 (1), 15164981 (1) (see all 6)
    anaplastic astrocytoma 59.41 5 14575240 (2), 14730454 (1), 17917751 (1), 17415208 (1)
    glioma 53.54 22 14575240 (5), 15198128 (4), 15634232 (2), 18282166 (2) (see all 7)
    demyelination 52.75 2 15519240 (2)
    About this table

    Human Genome Epidemiology Navigator: OLIG2 (4 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/106 PubMed articles for OLIG2 gene (see all 106 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 10215 HGNC: 9398 AceView: OLIG2 Ensembl:ENSG00000205927 euGenes: HUgn10215
    ECgene: OLIG2 H-InvDB: OLIG2
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for OLIG2 Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for OLIG2:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for OLIG2 Antibodies for OLIG2
     Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
     Lentivirus-delivered shRNAs for OLIG2 Browse small molecules at Sigma-Aldrich
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