OLFML2B Gene
protein-coding GIFtS : 47
GCID: GC01 M161952
olfactomedin-like 2B
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Aliasesfor OLFML2B gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Olfactomedin-Like 2B 1 2 DKFZP586L1511 RP11-227F8.12 Olfactomedin-Like Protein 2B2 Photomedin-23 Photomedin-23
Export aliases for OLFML2B gene to outside databases Previous GC identifers: GC01M159141 GC01M158684 GC01M160219 GC01M133197
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Summariesfor OLFML2B gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor OLFML2B gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_004487.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the OLFML2B gene promoter: RFX1 AML1a SREBP-1c Nkx2-5 GATA-1 SREBP-1b MEF-2A AREB6 SREBP-1a aMEF-2 Other transcription factors Search SABiosciences Chromatin IP Primers for OLFML2B Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat OLFML2B
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1q23.3 Ensembl cytogenetic band: 1q23.3 HGNC cytogenetic band: 1q23.1 OLFML2B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M161952: view genomic region
(about GC identifiers )
Start:
161,952,982 bp from pter
End:
161,993,644 bp from pter
Size:
40,663 bases
Orientation:
minus strand
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Proteinsfor OLFML2B gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: OLM2B_HUMAN, Q68BL8 (See
protein sequence )Recommended Name: Olfactomedin-like protein 2B precursor Size : 750 amino acids; 83999 Da
Subunit : Homodimer. Binds to heparin and chondroitin sulfate E (By similarity)
Subcellular location : Secreted (By similarity)
Sequence caution : Sequence=CAH71496.1; Type=Erroneous gene model prediction;
Secondary accessions : B7ZA39 Q5VU96 Q6NX46 Q86X11 Q9Y3X6Alternative splicing : 2 isoforms : Q68BL8-1 Q68BL8-2 Explore the universe of human proteins at neXtProt for OLFML2B: NX_Q68BL8 Post-translational modifications:
O-glycosylated and N-glycosylated (By similarity)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q68BL8 OLFML2B Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_056256.1 ENSEMBL proteins: ENSP00000436707 ENSP00000294794 ENSP00000435212 ENSP00000356917 ENSP00000356915 Human Recombinant Protein Products for OLFML2B: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0031012 extracellular matrix
IEA --
OLFML2B for ontologies About GeneDecksing OLFML2B Antibody Products: Assay Products for OLFML2B:
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Protein
Domains / Familiesfor OLFML2B gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
OLFML2B for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q68BL8 ProtoNet protein and cluster: Q68BL8
1 Blocks protein family : IPB003112 Olfactomedin-like UniProtKB/Swiss-Prot: OLM2B_HUMAN, Q68BL8 Similarity : Contains 1 olfactomedin-like domain
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Functionfor OLFML2B gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0050840 extracellular matrix binding
IEA --
OLFML2B for ontologies About GeneDecksing Phenotypes: 2 GenomeRNAi human phenotypes for OLFML2B :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OLFML2B (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OLFML2BOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: OLFML2B (NM_015441 ) Sino Biological Human cDNA Clone for OLFML2B DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OLFML2B Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OLFML2B
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OLFML2B
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Pathways & Interactionsfor OLFML2B gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for OLFML2B Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0030198 extracellular matrix organization
IEA --
OLFML2B for ontologies About GeneDecksing
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Drugs & Compoundsfor OLFML2B gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for OLFML2B Search CenterWatch for drugs/clinical trials and news about OLFML2B / OLM2B
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Transcriptsfor OLFML2B gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for OLFML2B gene: NM_015441.1 Unigene Cluster for OLFML2B:
Olfactomedin-like 2B Hs.507515 [show with all ESTs ] Unigene Representative Sequence: BC067274 6 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000533556 ENST00000294794 (uc001gbt.3 uc001gbu.3 uc010pkq.2 )ENST00000525589 ENST00000367940 ENST00000367938 ENST00000451379 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OLFML2B (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OLFML2BOriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: OLFML2B (NM_015441 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for OLFML2B Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OLFML2B
Additional cDNA sequence: AB119054.1 AK301499.1 AK316154.1 AL050137.1 BC047472.1 BC067274.1 BX648975.1
3 DOTS entries : DT.99964182 DT.100694438
DT.87078291 24/98 AceView cDNA sequences (see all 98 ):
BM719150 AW137901 BC067274 BE328022 AW581166 CR600954 NM_015441 AA489716 BE645614 AA988383 AB119054 AI159936 AA427898 BU622765 AA609525 AI923256 BU626319 BE046488 BX648975 AI571800 CA449685 BQ004219 AI348665 AA235255 GeneLoc Exon Structure
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Expression for OLFML2B gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section OLFML2B expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TCATCTTTGCAbout this image OLFML2B expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See OLFML2B Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for OLFML2B SOURCE GeneReport for Unigene cluster: Hs.507515 SABiosciences Custom PCR Arrays for OLFML2B Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for OLFML2BBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat OLFML2B QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat OLFML2B QIAGEN QuantiFast Probe-based Assays in human , mouse , rat OLFML2B In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OLFML2B
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Orthologsfor OLFML2B gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for OLFML2B gene from 5/15 species (see all 15 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
OLFML2B1
olfactomedin-like 2B
71.53(n) 72.53(a)
 
424366 XM_422209.3 XP_422209.3
lizard (Anolis carolinensis)
Reptilia
OLFML2B6
--
58(a)
1 ↔ 1
4(71042561-71062810)
zebrafish (Danio rerio)
Actinopterygii
olfml2b1
olfactomedin-like 2B
58.92(n) 56.77(a)
 
567907 XM_691218.4 XP_696310.4
fruit fly (Drosophila melanogaster)
Insecta
CG68676
--
9(a)
1 → many
X(17917903-17922294)
worm (Caenorhabditis elegans)
Secernentea
unc-1226 cof-26
UNCoordinated family member (unc-122)COlmedin (collagen plus olFactomedin) family membe...
15(a) 15(a)
many ↔ manymany ↔ many
I(14872151-14875367) I(6250573-6252823)
ENSEMBL Gene Tree for OLFML2B (if available)TreeFam Gene Tree for OLFML2B (if available)
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Paralogsfor OLFML2B gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for OLFML2B gene GLDN 2 OLFM3 2 MYOC 2 OLFML3 2 OLFML2A 2 OLFM2 2 OLFM1 2 OLFM4 2 OLFML1 2 7 SIMAP similar genes for OLFML2B using alignment to 4 protein entries: OLM2B_HUMAN (see all proteins ):FLJ00237 OLFM2 OLFM1 MYOC OLFM3 LPHN1 OLFML2A
OLFML2B for paralogs About GeneDecksing
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Genomic Variantsfor OLFML2B gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for OLFML2B (161952982 - 161993644 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for OLFML2B 2 CNVs : 6791 4259
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing OLFML2B
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Disorders
/ Diseasesfor OLFML2B gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
OLFML2B for disorders About GeneDecksing 1 disease for OLFML2B : About MalaCards atherosclerosis Human Genome Epidemiology (HuGE) Navigator: OLFML2B (2 documents) Export disorders for OLFML2B gene to outside databases
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Publicationsfor OLFML2B gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for OLFML2B gene integrated from 9 sources : (articles sorted by number of sources associating them with OLFML2B) Utopia : connect your pdf to the dynamic world of online information
Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) Integrative predictive model of coronary artery calci fication in atherosclerosis. (PubMed id 19948975) 1 McGeachie M....Ramoni M.F. (2009) Common genetic variation near the phospholamban gene is associated with cardiac repolarisation: meta-analysis of three genome-wide a ssociation studies. (PubMed id 19587794) 1 Nolte I.M....Jamshidi Y. (2009) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 2 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Hepatitis C virus core protein interacts with 14-3-3 protein and activates the kinase Raf-1. (PubMed id ) 2 Aoki H.... Hino O. (2000)
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External Searches for OLFML2B gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing OLFML2B gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing OLFML2B gene
(According to HUGE )
About This Section --
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Specialized Databases showing OLFML2B gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for OLFML2B Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for OLFML2B gene: Search GeneIP for patents involving OLFML2B GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor OLFML2B gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for OLFML2B OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for OLFML2B OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for OLFML2B OriGene Protein Over-expression Lysate for OLFML2B Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for OLFML2B OriGene 3'-UTR Clone for OLFML2B OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for OLFML2B OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for OLFML2B Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for OLFML2B OriGene Custom Protein Services for OLFML2B OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat OLFML2B QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing OLFML2B QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat OLFML2B QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat OLFML2B QIAGEN QuantiFast Probe-based Assays in human , mouse , rat OLFML2B QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat OLFML2B
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OLFML2B Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for OLFML2B
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat OLFML2B
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Aliases for OLFML2B
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Disorders / Diseases for OLFML2B
Domains / Families for OLFML2B
Drugs / Compounds for OLFML2B
Expression for OLFML2B
Function for OLFML2B
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Orthologs for OLFML2B
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Proteins for OLFML2B
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