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Aliases for OIP5-AS1 Gene

Subcategory (RNA class) for OIP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OIP5-AS1 Gene

  • OIP5 Antisense RNA 1 2 3 5
  • OIP5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Linc-OIP5 3
  • Cyrano 3

External Ids for OIP5-AS1 Gene

Previous GeneCards Identifiers for OIP5-AS1 Gene

  • GC15P041577

Summaries for OIP5-AS1 Gene

GeneCards Summary for OIP5-AS1 Gene

OIP5-AS1 (OIP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OIP5-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OIP5-AS1 Gene

Genomics for OIP5-AS1 Gene

Regulatory Elements for OIP5-AS1 Gene

Enhancers for OIP5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H040959 0.8 ENCODE dbSUPER 11 -323.4 -323388 1.8 TBP ZFHX2 SMARCC1 POLR2A MAX ZIC2 EGR2 OIP5-AS1 NDUFAF1 EHD4-AS1 SPINT1 GC15M040957 LOC105370789
GH15H040856 1.5 Ensembl ENCODE dbSUPER 4.4 -425.7 -425745 3.5 HDGF PKNOX1 ARID4B ZNF2 GLIS2 ZNF207 ZNF143 RUNX3 DEK MXD4 ZFYVE19 CCDC32 SPINT1 OIP5-AS1 GC15P040857 GC15P040858 RHOV
GH15H040850 0.9 ENCODE dbSUPER 5.7 -433.0 -432992 1.3 TFAP4 SAP130 SP5 ZNF644 RARA TEAD3 NFIL3 NR2F6 SMAD4 RXRB OIP5-AS1 GC15P040857 GC15P040858 SPINT1-AS1
GH15H041232 0.9 ENCODE 5.3 -50.4 -50420 1.3 PKNOX1 ATF1 ARNT TCF12 GATA2 FOS ATF7 NCOA1 MEF2D MBD2 NDUFAF1 ZFYVE19 OIP5-AS1 EXD1 GC15M041261 GC15M041262 GC15M041263 GC15M041264 GC15M041265 GC15M041266
GH15H040921 0.8 ENCODE dbSUPER 4.4 -361.5 -361541 1.3 ELF3 ZGPAT RCOR2 HNF4A KDM1A MIER2 REST RPAP1 OIP5-AS1 DLL4 ENSG00000251161
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OIP5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for OIP5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000075627 510 1801 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF207 FOS SP3

Genomic Locations for OIP5-AS1 Gene

Genomic Locations for OIP5-AS1 Gene
chr15:41,283,990-41,309,737
(GRCh38/hg38)
Size:
25,748 bases
Orientation:
Plus strand
chr15:41,576,188-41,601,901
(GRCh37/hg19)

Genomic View for OIP5-AS1 Gene

Genes around OIP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OIP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OIP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OIP5-AS1 Gene

Proteins for OIP5-AS1 Gene

Post-translational modifications for OIP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OIP5-AS1 Gene

Domains & Families for OIP5-AS1 Gene

Gene Families for OIP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OIP5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OIP5-AS1 Gene

Function for OIP5-AS1 Gene

Phenotypes for OIP5-AS1 Gene

GenomeRNAi human phenotypes for OIP5-AS1:
genes like me logo Genes that share phenotypes with OIP5-AS1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OIP5-AS1 Gene

Localization for OIP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OIP5-AS1 Gene

Pathways & Interactions for OIP5-AS1 Gene

SuperPathways for OIP5-AS1 Gene

No Data Available

Interacting Proteins for OIP5-AS1 Gene

Gene Ontology (GO) - Biological Process for OIP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OIP5-AS1 Gene

Drugs & Compounds for OIP5-AS1 Gene

No Compound Related Data Available

Transcripts for OIP5-AS1 Gene

mRNA/cDNA for OIP5-AS1 Gene

(6) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OIP5-AS1 Gene

OIP5 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OIP5-AS1 Gene

No ASD Table

Relevant External Links for OIP5-AS1 Gene

GeneLoc Exon Structure for
OIP5-AS1
ECgene alternative splicing isoforms for
OIP5-AS1

Expression for OIP5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OIP5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OIP5-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.2).

SOURCE GeneReport for Unigene cluster for OIP5-AS1 Gene:

Hs.380164
genes like me logo Genes that share expression patterns with OIP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OIP5-AS1 Gene

Orthologs for OIP5-AS1 Gene

Evolution for OIP5-AS1 Gene

ENSEMBL:
Gene Tree for OIP5-AS1 (if available)
TreeFam:
Gene Tree for OIP5-AS1 (if available)

No data available for Orthologs for OIP5-AS1 Gene

Paralogs for OIP5-AS1 Gene

No data available for Paralogs for OIP5-AS1 Gene

Variants for OIP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for OIP5-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000026988 -- 41,297,796(+) ACAGG(A/C)ACCCG intron-variant
rs1000039379 -- 41,292,940(+) CCCAG(A/G)CTGGA intron-variant
rs1000173812 -- 41,298,295(+) AAGAC(A/G)TCATT nc-transcript-variant
rs1000204348 -- 41,282,084(+) GGCCA(C/T)TTCCC downstream-variant-500B, upstream-variant-2KB
rs1000547188 -- 41,288,030(+) CCTCC(C/T)GGGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OIP5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv984057 CNV duplication 23825009
nsv952612 CNV duplication 24416366
nsv1113704 CNV deletion 24896259
nsv1045455 CNV gain 25217958
esv3552361 CNV deletion 23714750
dgv2580n100 CNV gain 25217958

Relevant External Links for OIP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OIP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OIP5-AS1 Gene

Disorders for OIP5-AS1 Gene

Relevant External Links for OIP5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OIP5-AS1

No disorders were found for OIP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OIP5-AS1 Gene

Publications for OIP5-AS1 Gene

  1. Knockdown of linc-OIP5 inhibits proliferation and migration of glioma cells through down-regulation of YAP-NOTCH signaling pathway. (PMID: 28189759) Hu GW … Lang HL (Gene 2017) 2 3 60
  2. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. (PMID: 22196729) Ulitsky I … Bartel DP (Cell 2011) 2 3 60
  3. LncRNA OIP5-AS1/cyrano sponges RNA-binding protein HuR. (PMID: 26819413) Kim J … Gorospe M (Nucleic acids research 2016) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for OIP5-AS1 Gene

Sources for OIP5-AS1 Gene

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