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Aliases for OIP5-AS1 Gene

Subcategory (RNA class) for OIP5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OIP5-AS1 Gene

  • OIP5 Antisense RNA 1 2 3 5
  • OIP5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Cyrano 3

External Ids for OIP5-AS1 Gene

Previous GeneCards Identifiers for OIP5-AS1 Gene

  • GC15P041577

Summaries for OIP5-AS1 Gene

GeneCards Summary for OIP5-AS1 Gene

OIP5-AS1 (OIP5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OIP5-AS1 Gene

Genomics for OIP5-AS1 Gene

Regulatory Elements for OIP5-AS1 Gene

Enhancers for OIP5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around OIP5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for OIP5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for OIP5-AS1 Gene

Chromosome:
15
Start:
41,283,990 bp from pter
End:
41,309,737 bp from pter
Size:
25,748 bases
Orientation:
Plus strand

Genomic View for OIP5-AS1 Gene

Genes around OIP5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OIP5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OIP5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OIP5-AS1 Gene

Proteins for OIP5-AS1 Gene

Post-translational modifications for OIP5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OIP5-AS1 Gene

Domains & Families for OIP5-AS1 Gene

Gene Families for OIP5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OIP5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OIP5-AS1 Gene

Function for OIP5-AS1 Gene

Phenotypes for OIP5-AS1 Gene

GenomeRNAi human phenotypes for OIP5-AS1:
genes like me logo Genes that share phenotypes with OIP5-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OIP5-AS1 Gene

Localization for OIP5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OIP5-AS1 Gene

Pathways & Interactions for OIP5-AS1 Gene

SuperPathways for OIP5-AS1 Gene

No Data Available

Interacting Proteins for OIP5-AS1 Gene

Gene Ontology (GO) - Biological Process for OIP5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OIP5-AS1 Gene

Drugs & Compounds for OIP5-AS1 Gene

No Compound Related Data Available

Transcripts for OIP5-AS1 Gene

mRNA/cDNA for OIP5-AS1 Gene

(6) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OIP5-AS1 Gene

OIP5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OIP5-AS1 Gene

No ASD Table

Relevant External Links for OIP5-AS1 Gene

GeneLoc Exon Structure for
OIP5-AS1
ECgene alternative splicing isoforms for
OIP5-AS1

Expression for OIP5-AS1 Gene

mRNA expression in normal human tissues for OIP5-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OIP5-AS1 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.2).

SOURCE GeneReport for Unigene cluster for OIP5-AS1 Gene:

Hs.380164
genes like me logo Genes that share expression patterns with OIP5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OIP5-AS1 Gene

Orthologs for OIP5-AS1 Gene

Evolution for OIP5-AS1 Gene

ENSEMBL:
Gene Tree for OIP5-AS1 (if available)
TreeFam:
Gene Tree for OIP5-AS1 (if available)

No data available for Orthologs for OIP5-AS1 Gene

Paralogs for OIP5-AS1 Gene

No data available for Paralogs for OIP5-AS1 Gene

Variants for OIP5-AS1 Gene

Sequence variations from dbSNP and Humsavar for OIP5-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs2899023 -- 41,284,966(+) AACCT(A/T)ACCCT intron-variant
rs2899024 -- 41,284,967(+) ACCTT(A/C/G)CCCTC intron-variant
rs3210775 -- 41,299,253(+) tagct(A/G)ggatt nc-transcript-variant
rs3832987 -- 41,283,624(-) TCTCT(-/T)CACTG upstream-variant-2KB
rs3840013 -- 41,284,965(-) TGAGG(-/GTAA)GGTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OIP5-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2580n100 CNV gain 25217958
esv3552361 CNV deletion 23714750
nsv1045455 CNV gain 25217958
nsv1113704 CNV deletion 24896259
nsv952612 CNV duplication 24416366
nsv984057 CNV duplication 23825009

Relevant External Links for OIP5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OIP5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OIP5-AS1 Gene

Disorders for OIP5-AS1 Gene

Relevant External Links for OIP5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OIP5-AS1

No disorders were found for OIP5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OIP5-AS1 Gene

Publications for OIP5-AS1 Gene

  1. Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution. (PMID: 22196729) Ulitsky I. … Bartel D.P. (Cell 2011) 2 3 65
  2. LncRNA OIP5-AS1/cyrano sponges RNA-binding protein HuR. (PMID: 26819413) Kim J. … Gorospe M. (Nucleic Acids Res. 2016) 3 65
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65
  5. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 3 65

Products for OIP5-AS1 Gene

Sources for OIP5-AS1 Gene

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