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Aliases for OGFR-AS1 Gene

Subcategory (RNA class) for OGFR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for OGFR-AS1 Gene

  • OGFR Antisense RNA 1 2 3 5
  • OGFR Antisense RNA 1 (Non-Protein Coding) 2

External Ids for OGFR-AS1 Gene

Previous GeneCards Identifiers for OGFR-AS1 Gene

  • GC20M061432

Summaries for OGFR-AS1 Gene

GeneCards Summary for OGFR-AS1 Gene

OGFR-AS1 (OGFR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OGFR-AS1 Gene

Genomics for OGFR-AS1 Gene

Regulatory Elements for OGFR-AS1 Gene

Enhancers for OGFR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F062738 1.4 FANTOM5 Ensembl ENCODE 11.6 +65.0 65023 5.1 PKNOX1 ATF1 SIN3A GLIS2 ELK1 FOS JUNB MIER2 REST SMARCB1 OGFR NTSR1 LINC00659 LINC00686 OGFR-AS1 MIR133A2 MIR1-1HG C20orf166-AS1 MIR1-1 ENSG00000229882
GH20F062715 1.3 Ensembl ENCODE 11.5 +89.2 89178 1.0 L3MBTL2 MAFK MGA OGFR OGFR-AS1 LINC00659 SLCO4A1-AS1 SLCO4A1 MIR133A2 MRGBP ENSG00000229882 ENSG00000232121 NTSR1
GH20F062708 1 Ensembl ENCODE 11.5 +94.7 94661 4.3 ATF1 CBX3 PKNOX1 KLF17 SIN3A GLIS2 SCRT2 CREM REST CREB3 RTEL1 ARFGAP1 TNFRSF6B ENSG00000223669 OGFR OGFR-AS1 SLCO4A1-AS1 SLCO4A1 MRGBP MIR133A2
GH20F062641 0.7 Ensembl ENCODE 11.3 +160.2 160206 8.0 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ZNF2 SLCO4A1-AS1 OGFR OGFR-AS1 C20orf166-AS1 MIR1-1 MIR1-1HG MIR133A2 TCFL5 NKAIN4 ENSG00000167046
GH20F062649 1.1 FANTOM5 ENCODE 11.3 +153.5 153496 4.7 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 OGFR OGFR-AS1 MIR1-1 C20orf166-AS1 MIR1-1HG MIR133A2 DIDO1 OSBPL2 DPH3P1 BHLHE23
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around OGFR-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for OGFR-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001450361 287 2201 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FOS

Genomic Location for OGFR-AS1 Gene

Chromosome:
20
Start:
62,800,627 bp from pter
End:
62,805,587 bp from pter
Size:
4,961 bases
Orientation:
Minus strand

Genomic View for OGFR-AS1 Gene

Genes around OGFR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OGFR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OGFR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OGFR-AS1 Gene

Proteins for OGFR-AS1 Gene

Post-translational modifications for OGFR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OGFR-AS1 Gene

Domains & Families for OGFR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OGFR-AS1 Gene

Function for OGFR-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OGFR-AS1 Gene

Localization for OGFR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for OGFR-AS1 Gene

Pathways & Interactions for OGFR-AS1 Gene

SuperPathways for OGFR-AS1 Gene

No Data Available

Interacting Proteins for OGFR-AS1 Gene

Gene Ontology (GO) - Biological Process for OGFR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OGFR-AS1 Gene

Transcripts for OGFR-AS1 Gene

mRNA/cDNA for OGFR-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OGFR-AS1 Gene

No ASD Table

Relevant External Links for OGFR-AS1 Gene

GeneLoc Exon Structure for
OGFR-AS1
ECgene alternative splicing isoforms for
OGFR-AS1

Expression for OGFR-AS1 Gene

mRNA expression in normal human tissues for OGFR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OGFR-AS1 Gene

This gene is overexpressed in Liver (x6.3).
genes like me logo Genes that share expression patterns with OGFR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for OGFR-AS1 Gene

Orthologs for OGFR-AS1 Gene

Evolution for OGFR-AS1 Gene

ENSEMBL:
Gene Tree for OGFR-AS1 (if available)
TreeFam:
Gene Tree for OGFR-AS1 (if available)

No data available for Orthologs for OGFR-AS1 Gene

Paralogs for OGFR-AS1 Gene

No data available for Paralogs for OGFR-AS1 Gene

Variants for OGFR-AS1 Gene

Sequence variations from dbSNP and Humsavar for OGFR-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1060961 -- 62,800,846(-) GGAAG(A/G)AGCCC nc-transcript-variant, utr-variant-3-prime
rs111323810 -- 62,804,096(+) AAAGG(C/T)GAAGG intron-variant, upstream-variant-2KB
rs111414015 -- 62,804,949(+) GAGGC(C/T)GCCGG intron-variant, reference, synonymous-codon
rs111518818 -- 62,807,579(+) GGGAC(A/G)TGTGT upstream-variant-2KB, reference, missense
rs111671968 -- 62,800,560(+) TTCGT(A/G)TGACT intron-variant, nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for OGFR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1073081 CNV deletion 25765185
nsv1144941 CNV deletion 24896259
nsv428380 CNV loss 18775914
nsv459065 CNV gain 19166990
nsv470558 CNV loss 18288195
nsv586496 CNV gain 21841781
nsv828792 CNV loss 20364138
nsv828793 CNV gain 20364138
nsv834027 CNV loss 17160897
nsv953302 CNV deletion 24416366
nsv9825 CNV gain 18304495

Relevant External Links for OGFR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OGFR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OGFR-AS1 Gene

Disorders for OGFR-AS1 Gene

Relevant External Links for OGFR-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OGFR-AS1

No disorders were found for OGFR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OGFR-AS1 Gene

Publications for OGFR-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for OGFR-AS1 Gene

Sources for OGFR-AS1 Gene

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