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Aliases & Descriptions for OFD1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| 71-7A 1, 2 | | CXorf5 2, 3, 5 | | MGC117039 2 | | MGC117040 2 | | OTTHUMP00000022940 2 | | SGBS2 2, 5 |
| | | Descriptions |
|---|
| Protein 71-7A 3 | | oral-facial-digital syndrome 1 2 |
|
| | Search outside databases for aliases for OFD1 genePrevious GC identifers: GC0XP012991 GC0XP012572 GC0XP013114 GC0XP013512 |
Summaries for OFD1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for OFD1: This gene is located on the X chromosome and encodes a centrosomal protein. A knockout mouse model has been used to study the effect of mutations in this gene. The mouse gene is also located on the X chromosome, however, unlike the human gene it is not subject to X inactivation. Mutations in this gene are associated with oral-facial-digital syndrome type I and Simpson-Golabi-Behmel syndrome type 2. Many pseudogenes have been identified; a single pseudogene is found on chromosome 5 while as many as fifteen have been found on the Y chromosome. Alternatively spliced transcripts have been described for this gene but the biological validity of these transcripts has not been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: OFD1_HUMAN, O75665Function: Unknown. May be involved in differentiation of metanephric precursor cellsGene Wiki entry for OFD1 |
Genomic Location for OFD1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the OFD1 gene 
Entrez Gene cytogenetic band: Xp22 Ensembl cytogenetic band: Xp22.2 HGNC cytogenetic band: Xp22OFD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome X GeneLoc Exon Structure GeneLoc location for GC0XP013662:
(about GC identifiers)
Start:
|
13,662,785 bp from pter |
End:
|
13,697,393 bp from pter |
Size:
|
34,609 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000023.9 NT_011757.15
| Proteins for OFD1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: OFD1_HUMAN, O75665 (See
protein sequence)Recommended Name: Oral-facial-digital syndrome 1 protein Size: 1012 amino acids; 116671 Da
Subcellular location: Cytoplasm. Centrosome
Secondary accessions: O75666 Q4VAK4Alternative splicing: 3 isoforms: O75665-1 O75665-2 O75665-3 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003602.1
ENSEMBL proteins: ENSP00000369923 ENSP00000369941 ENSP00000381432 ENSP00000344314
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for OFD1: Assays for OFD1: | Protein
Domains/ Families for OFD1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O75665
ProtoNet protein and cluster: O75665 1 Blocks protein family: IPB006594 Lissencephaly type-1-like homology motif
UniProtKB/Swiss-Prot: OFD1_HUMAN, O75665Similarity: Contains 1 LisH domain | Gene Function for OFD1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003611
Applied Biosystems Silencer® siRNAs for OFD1
Sigma-Aldrich siRNA for OFD1  Sigma-Aldrich shRNA for OFD1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003611                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003611                                  untagged cDNA clone in CMV expression vector: NM_003611 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003611
UniProtKB/Swiss-Prot: OFD1_HUMAN, O75665Function: Unknown. May be involved in differentiation of metanephric precursor cells11 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Ofd1):
1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003674 | molecular_function |
ND | -- | About this table | Pathways & Interactions for OFD1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/77 Interacting proteins for OFD1 (O756652 ENSP000003443143) via UniProtKB, MINT, and/or STRING (see all 77
)About this table
2 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008150 | biological_process |
ND | -- | | GO:0035083 | cilium axoneme assembly |
IEA | -- | About this table
|
Drugs & Compounds for OFD1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for OFD1
|
Transcripts for OFD1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003611
Sigma-Aldrich siRNA for OFD1  Sigma-Aldrich shRNA for OFD1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003611 REFSEQ mRNAs for OFD1 gene: NM_003611.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003611               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003611                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003611                                  untagged cDNA clone in CMV expression vector: NM_003611  Additional cDNA sequence: AK225847.1 AK289677.1 AK290354.1 AK297104.1 AK311067.1 BC012324.1 BC030787.1 BC042830.1 BC052809.1 BC062432.1 BC092448.1 BC096344.3 BC096345.1 Y15164.1 22 DOTS entries: DT.100794905 DT.455647 DT.101959262 DT.95281783 DT.121307239 DT.40257751 DT.92020973 DT.100794904 DT.101976838 DT.102831798 DT.97824032 DT.92433664 DT.92433677 DT.99937425 DT.99939489 DT.120836434 DT.86849468 DT.100794906 DT.75132428 DT.92433666 DT.95074813 DT.92433675 24/181 AceView cDNA sequences (see all 181
):AW089662 AW292752 AA504821 T16276 CA842137 Z41831 BX642816 BQ018682 BM984240 AW118344 BU738646 BM756408 AA399610 BU676315 CB162920 AA994778 BX491503 AA514458 CA841843 BG622551 BM717178 AI561264 AA173950 BX104531
highest scoring ESTs for OFD1:AA173950 AA399610 AA504821 AA514458 AA778870 AA780326 AA824530 AA994778 AI049632 AI245948 Unigene Cluster for OFD1: Oral-facial-digital syndrome 1 Hs.6483 [show with all ESTs]Unigene Representative Sequence: NM_003611
GeneLoc Exon Structure
5/10 Alternative Splicing Database (ASD) splice patterns (SP) for OFD1 (see all 10
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14a | · | 14b | ^ | 15 | ^ | 16a | · | 16b | ^ | 17a | · | 17b | ^ | 18 | ^ | |
| SP1: | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
| ExUns: | 19 | ^ | 20 | ^ | 21 | ^ | 22 | ^ | 23 | ^ | 24a | · | 24b | ^ | 25 | ^ | 26a | · | 26b | ^ | 27 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for OFD1
4 Ensembl transcripts including schematic representations: ENST00000380550
ENST00000380567
ENST00000398395
ENST00000340096
|
Expression for OFD1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| OFD1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for OFD1
1 / 2 / 3 4 probe-sets matching OFD1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTTGCTGCCC
SOURCE GeneReport for Unigene cluster: Hs.6483
Expression variation in blood from EXPOLDB for OFD1 UniProtKB/Swiss-Prot: OFD1_HUMAN, O75665Tissue specificity: Widely expressed. Expressed in 9 and 14 weeks old embryos in metanephric mesenchyme, oral mucosa, lung, heart, nasal and cranial cartilage, and brain. Expressed in metanephros, brain, tongue, and limb |
Orthologs for OFD1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for OFD1 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for OFD1
ENSEMBL Gene Tree for OFD1 | Paralogs for OFD1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for OFD1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for OFD1 (up to first 250kb)
|
Disorders & Mutations for OFD1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 300170 disorders: 311200 300209 UniProtKB/Swiss-Prot: OFD1_HUMAN, O75665
Defects in OFD1 are a cause of oral-facial-digital syndrome type I (OFD I) [MIM:311200]. OFD I is a X-linked dominant condition with lethality in males. The syndrome is characterized by clefts of the jaw and tongue in the area of the lateral incisors and canines. Other features are malformations of the face and skull, malformation of the hands (specifically syndactyly, clinodactyly, brachydactyly and occasionally postaxial polydactyly) and mental retardation. ODF I also causes polycystic kidney disease Defects in OFD1 are associated with Simpson-Golabi-Behmel syndrome type 2 (SGBS2) [MIM:300209]. This syndrome consists of a novel X-linked recessive mental retardation (XLMR) syndrome comprising macrocephaly and ciliary dysfunction co-segregates with a mutation in the OFD1 gene. Mutations of OFD1 have been associated with OFD I [MIM:311200] that is characterized by X-chromosomal dominant inheritance and lethality in males. In contrast, the carrier SGBS2 females are clinically inconspicuous, and the affected males suffered from severe mental retardation, recurrent respiratory tract infections and macrocephaly. All but one of the affected males died from respiratory problems in infancy; and impaired ciliary motility is confirmed in the index patient by high-speed video microscopy examination of nasal epithelium2 Novoseek disease relationships for OFD1 gene
About this table
1 PharmGKB disease relationship for OFD1 geneAbout this table
GeneTests: OFD1 Oral-Facial-Digital Syndrome Type I Human Gene Mutation Database: OFD1
|
Medical News for OFD1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for OFD1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/32 PubMed articles for OFD1 gene (see all 32
):- Characterization of Cxorf5 (71-7A), a novel human cDNA mapping to Xp22 and encoding a protein containing coiled-coil alpha-helical domains. (PubMed id 9722947)1, 2, 3, 4 de Conciliis L.... Banfi S. (1998)
- Identification of the gene for oral-facial-digital type I syndrome. (PubMed id 11179005)1, 3, 4 Ferrante M.I.... Franco B. (2001)
- Four novel mutations in the OFD1 (Cxorf5) gene in Finnish patients with oral-facial-digital syndrome 1. (PubMed id 11950863)1, 3, 4 Rakkolainen A.... Jaervelae I. (2002)
- A novel X-linked recessive mental retardation syndrome comprising macrocephaly and ciliary dysfunction is allelic to oral-facial-digital type I syndrome. (PubMed id 16783569)1, 3, 4 Budny B.... Ropers H.-H. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Proteomic characterization of the human centrosome by protein correlation profiling. (PubMed id 14654843)3, 4 Andersen J.S....Mann M. (2003)
- OFD1, the gene mutated in oral-facial-digital syndrome type 1, is expressed in the metanephros and in human embryonic renal mesenchymal cells. (PubMed id 12595504)3, 4 Romio L.... Feather S.A. (2003)
- The oral-facial-digital syndrome type 1 (OFD1), a cause of polycystic kidney disease and associated malformations, maps to Xp22.2-Xp22.3. (PubMed id 9215688)2, 3 Feather S.A....Winter R.M. (1997)
- Genomic deletions of OFD1 account for 23% of oral-facial-digital type 1 syndrome after negative DNA sequencing. (PubMed id 19023858)1, 3 Thauvin-Robinet C....Faivre L. (2009)
- Functional characterization of the OFD1 protein reveals a nuclear localization and physical interaction with subunits of a chromatin remodeling complex. (PubMed id 17761535)1, 3 Giorgio G....Franco B. (2007)
|
Search for OFD1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing OFD1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing OFD1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing OFD1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=OFD1 |
|
| | | About This Section
| --
| Services for OFD1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for OFD1:

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