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Aliases for ODF3L1 Gene

Aliases for ODF3L1 Gene

  • Outer Dense Fiber Of Sperm Tails 3-Like 1 2 3

External Ids for ODF3L1 Gene

Summaries for ODF3L1 Gene

GeneCards Summary for ODF3L1 Gene

ODF3L1 (Outer Dense Fiber Of Sperm Tails 3-Like 1) is a Protein Coding gene. An important paralog of this gene is ODF3B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ODF3L1 Gene

Genomics for ODF3L1 Gene

Genomic Location for ODF3L1 Gene

Start:
75,723,963 bp from pter
End:
75,727,688 bp from pter
Size:
3,726 bases
Orientation:
Plus strand

Genomic View for ODF3L1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ODF3L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ODF3L1 Gene

Regulatory Elements for ODF3L1 Gene

Proteins for ODF3L1 Gene

  • Protein details for ODF3L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IXM7-OD3L1_HUMAN
    Recommended name:
    Outer dense fiber protein 3-like protein 1
    Protein Accession:
    Q8IXM7
    Secondary Accessions:

    Protein attributes for ODF3L1 Gene

    Size:
    274 amino acids
    Molecular mass:
    31065 Da
    Quaternary structure:
    No Data Available

neXtProt entry for ODF3L1 Gene

Proteomics data for ODF3L1 Gene at MOPED

Post-translational modifications for ODF3L1 Gene

No Post-translational modifications

Other Protein References for ODF3L1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ODF3L1 Gene

Domains for ODF3L1 Gene

Protein Domains for ODF3L1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

OD3L1_HUMAN
Family:
  • Belongs to the ODF3 family.:
    • Q8IXM7
Similarity:
  • Contains 2 STPGR (Sperm-tail PG-rich) repeats.:
    • Q8IXM7
genes like me logo Genes that share domains with ODF3L1: view

No data available for Gene Families for ODF3L1 Gene

Function for ODF3L1 Gene

Phenotypes for ODF3L1 Gene

GenomeRNAi human phenotypes for ODF3L1:
genes like me logo Genes that share phenotypes with ODF3L1: view

miRNA for ODF3L1 Gene

miRTarBase miRNAs that target ODF3L1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for ODF3L1 Gene

Localization for ODF3L1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ODF3L1 Gene COMPARTMENTS Subcellular localization image for ODF3L1 gene
Compartment Confidence
cytosol 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for ODF3L1 Gene

Pathways for ODF3L1 Gene

SuperPathways for ODF3L1 Gene

No Data Available

Interacting Proteins for ODF3L1 Gene

Gene Ontology (GO) - Biological Process for ODF3L1 Gene

None

No data available for Pathways by source for ODF3L1 Gene

Transcripts for ODF3L1 Gene

mRNA/cDNA for ODF3L1 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ODF3L1 Gene

Outer dense fiber of sperm tails 3-like 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ODF3L1 Gene

No ASD Table

Relevant External Links for ODF3L1 Gene

GeneLoc Exon Structure for
ODF3L1
ECgene alternative splicing isoforms for
ODF3L1

Expression for ODF3L1 Gene

mRNA expression in normal human tissues for ODF3L1 Gene

mRNA differential expression in normal tissues according to GTEx for ODF3L1 Gene

This gene is overexpressed in Testis (26.2).

SOURCE GeneReport for Unigene cluster for ODF3L1 Gene Hs.144348

genes like me logo Genes that share expressions with ODF3L1: view

Orthologs for ODF3L1 Gene

This gene was present in the common ancestor of animals.

Orthologs for ODF3L1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ODF3L1 36
  • 99.39 (n)
  • 99.64 (a)
ODF3L1 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ODF3L1 37
  • 46 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ODF3L1 36
  • 84.18 (n)
  • 78.83 (a)
ODF3L1 37
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Odf3l1 36
  • 81.27 (n)
  • 71.9 (a)
Odf3l1 16
Odf3l1 37
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ODF3L1 37
  • 58 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ODF3L1 37
  • 44 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Odf3l1 36
  • 79.2 (n)
  • 70.44 (a)
lizard
(Anolis carolinensis)
Reptilia ODF3L1 37
  • 39 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii odf3l2 36
  • 47.56 (n)
  • 39.84 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10252 37
  • 25 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10233 37
  • 35 (a)
OneToMany
Species with no ortholog for ODF3L1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ODF3L1 Gene

ENSEMBL:
Gene Tree for ODF3L1 (if available)
TreeFam:
Gene Tree for ODF3L1 (if available)

Paralogs for ODF3L1 Gene

Paralogs for ODF3L1 Gene

Selected SIMAP similar genes for ODF3L1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ODF3L1: view

Variants for ODF3L1 Gene

Sequence variations from dbSNP and Humsavar for ODF3L1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs2675214 -- 75,726,676(+) AGTGG(C/T)GTGAT intron-variant
rs4503758 -- 75,724,831(+) ATCCA(C/T)GTCGG intron-variant
rs4886456 -- 75,723,526(+) ACCAC(A/G)CCCTG upstream-variant-2KB
rs10163112 -- 75,723,056(+) ATGTA(A/G)TAGGA upstream-variant-2KB
rs11637353 -- 75,722,088(+) AGGAG(G/T)TCTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ODF3L1 Gene

Variant ID Type Subtype PubMed ID
esv2749894 CNV Deletion 23290073
esv2749895 CNV Deletion 23290073
nsv527186 CNV Loss 19592680
dgv2416n71 CNV Loss 21882294

Relevant External Links for ODF3L1 Gene

HapMap Linkage Disequilibrium report
ODF3L1

Disorders for ODF3L1 Gene

No disorders were found for ODF3L1 Gene.

No data available for UniProtKB/Swiss-Prot for ODF3L1 Gene

Publications for ODF3L1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for ODF3L1 Gene

Sources for ODF3L1 Gene

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