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Aliases for ODF2L Gene

Aliases for ODF2L Gene

  • Outer Dense Fiber Of Sperm Tails 2-Like 2 3
  • Outer Dense Fiber Protein 2-Like 3
  • DJ977L11.1 3
  • KIAA1229 4

External Ids for ODF2L Gene

Previous GeneCards Identifiers for ODF2L Gene

  • GC01M086527
  • GC01M086808
  • GC01M084923

Summaries for ODF2L Gene

GeneCards Summary for ODF2L Gene

ODF2L (Outer Dense Fiber Of Sperm Tails 2-Like) is a Protein Coding gene. An important paralog of this gene is ODF2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ODF2L Gene

Genomics for ODF2L Gene

Regulatory Elements for ODF2L Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for ODF2L Gene

Start:
86,346,824 bp from pter
End:
86,396,342 bp from pter
Size:
49,519 bases
Orientation:
Minus strand

Genomic View for ODF2L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ODF2L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ODF2L Gene

Proteins for ODF2L Gene

  • Protein details for ODF2L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9ULJ1-ODF2L_HUMAN
    Recommended name:
    Outer dense fiber protein 2-like
    Protein Accession:
    Q9ULJ1
    Secondary Accessions:
    • A8MU56
    • B4E037
    • Q05C40
    • Q5BJG5
    • Q5TBX3
    • Q5TBX4
    • Q86X31

    Protein attributes for ODF2L Gene

    Size:
    636 amino acids
    Molecular mass:
    73728 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH29420.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH47368.1; Type=Erroneous termination; Positions=397; Note=Translated as Glu.; Evidence={ECO:0000305}; Sequence=AK308351; Type=Frameshift; Positions=296; Evidence={ECO:0000305}; Sequence=BAA86543.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for ODF2L Gene

neXtProt entry for ODF2L Gene

Proteomics data for ODF2L Gene at MOPED

Post-translational modifications for ODF2L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ODF2L Gene

Domains for ODF2L Gene

Protein Domains for ODF2L Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9ULJ1

UniProtKB/Swiss-Prot:

ODF2L_HUMAN :
  • Q9ULJ1
Family:
  • Belongs to the ODF2 family.
genes like me logo Genes that share domains with ODF2L: view

No data available for Gene Families for ODF2L Gene

Function for ODF2L Gene

Gene Ontology (GO) - Molecular Function for ODF2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding --
genes like me logo Genes that share ontologies with ODF2L: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ODF2L

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for ODF2L Gene

Localization for ODF2L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ODF2L Gene COMPARTMENTS Subcellular localization image for ODF2L gene
Compartment Confidence
cytoskeleton 5
cytosol 3
nucleus 2

Gene Ontology (GO) - Cellular Components for ODF2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005813 centrosome IDA 21399614
genes like me logo Genes that share ontologies with ODF2L: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ODF2L Gene

Pathways for ODF2L Gene

SuperPathways for ODF2L Gene

No Data Available

Interacting Proteins for ODF2L Gene

Gene Ontology (GO) - Biological Process for ODF2L Gene

None

No data available for Pathways by source for ODF2L Gene

Transcripts for ODF2L Gene

Unigene Clusters for ODF2L Gene

Outer dense fiber of sperm tails 2-like:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ODF2L

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ODF2L Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14
SP1: - - - -
SP2: -
SP3:
SP4: - - -
SP5: - -
SP6: -
SP7:

Relevant External Links for ODF2L Gene

GeneLoc Exon Structure for
ODF2L
ECgene alternative splicing isoforms for
ODF2L

Expression for ODF2L Gene

mRNA expression in normal human tissues for ODF2L Gene

Protein differential expression in normal tissues for ODF2L Gene

This gene is overexpressed in Milk (68.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ODF2L Gene

SOURCE GeneReport for Unigene cluster for ODF2L Gene Hs.149360

genes like me logo Genes that share expressions with ODF2L: view

Expression partners for ODF2L Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ODF2L Gene

Orthologs for ODF2L Gene

This gene was present in the common ancestor of chordates.

Orthologs for ODF2L Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia ODF2L 35
  • 90.19 (n)
  • 83.36 (a)
ODF2L 36
  • 72 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ODF2L 35
  • 90.28 (n)
  • 84.07 (a)
ODF2L 36
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Odf2l 35
  • 79.84 (n)
  • 75.3 (a)
Odf2l 16
Odf2l 36
  • 70 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia ODF2L 35
  • 99.35 (n)
  • 98.71 (a)
ODF2L 36
  • 92 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Odf2l 35
  • 79.44 (n)
  • 72.91 (a)
oppossum
(Monodelphis domestica)
Mammalia ODF2L 36
  • 45 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 51 (a)
OneToMany
-- 36
  • 46 (a)
OneToMany
chicken
(Gallus gallus)
Aves ODF2L 35
  • 60.64 (n)
  • 45.96 (a)
ODF2L 36
  • 35 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ODF2L 36
  • 41 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia odf2l 35
  • 54.59 (n)
  • 38.13 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 14 (a)
OneToMany
Species with no ortholog for ODF2L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ODF2L Gene

ENSEMBL:
Gene Tree for ODF2L (if available)
TreeFam:
Gene Tree for ODF2L (if available)

Paralogs for ODF2L Gene

Paralogs for ODF2L Gene

Selected SIMAP similar genes for ODF2L Gene using alignment to 10 proteins:

genes like me logo Genes that share paralogs with ODF2L: view

Variants for ODF2L Gene

Sequence variations from dbSNP and Humsavar for ODF2L Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs166626 -- 86,353,474(+) TGGTC(A/T)GAATT intron-variant
rs166628 -- 86,366,435(+) acaca(C/T)acaca intron-variant
rs175363 -- 86,359,956(+) TACCA(C/T)TGAAC intron-variant
rs187971 -- 86,377,356(+) gtatc(G/T)gtggc intron-variant
rs272491 -- 86,349,005(+) ATACT(C/T)ACATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ODF2L Gene

Variant ID Type Subtype PubMed ID
nsv871866 CNV Gain 21882294
nsv871081 CNV Loss 21882294
esv2714363 CNV Deletion 23290073
esv2714374 CNV Deletion 23290073
esv2657167 CNV Deletion 23128226

Relevant External Links for ODF2L Gene

HapMap Linkage Disequilibrium report
ODF2L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ODF2L Gene

Disorders for ODF2L Gene

Relevant External Links for ODF2L

Genetic Association Database (GAD)
ODF2L

No disorders were found for ODF2L Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for ODF2L Gene

Publications for ODF2L Gene

  1. Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10574462) Nagase T. … Ohara O. (DNA Res. 1999) 2 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  4. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PMID: 20360068) Hutchins J.R. … Peters J.M. (Science 2010) 3
  5. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3

Products for ODF2L Gene

Sources for ODF2L Gene

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