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Aliases for ODF2L Gene

Aliases for ODF2L Gene

  • Outer Dense Fiber Of Sperm Tails 2 Like 2 3 5
  • Outer Dense Fiber Of Sperm Tails 2-Like 2
  • Outer Dense Fiber Protein 2-Like 3
  • DJ977L11.1 3
  • KIAA1229 4

External Ids for ODF2L Gene

Previous GeneCards Identifiers for ODF2L Gene

  • GC01M086527
  • GC01M086808
  • GC01M084923

Summaries for ODF2L Gene

GeneCards Summary for ODF2L Gene

ODF2L (Outer Dense Fiber Of Sperm Tails 2 Like) is a Protein Coding gene. GO annotations related to this gene include nucleotide binding. An important paralog of this gene is ODF2.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ODF2L Gene

Genomics for ODF2L Gene

Regulatory Elements for ODF2L Gene

Enhancers for ODF2L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G086428 1.1 Ensembl ENCODE 32.6 -33.6 -33604 2.3 TBP RFX5 SCRT2 FOS ETV6 CEBPB ZNF398 ELF1 MAFF SMARCA4 ODF2L CLCA2 CLCA1
GH01G086380 1.1 Ensembl ENCODE 22.7 +15.9 15941 0.4 ZNF473 INSM2 FEZF1 ZNF2 RAD21 ZNF366 ZNF350 FOS ZNF654 ZNF362 ODF2L CLCA2 GC01P086383 MIR7856
GH01G086393 1 ENCODE 23.2 +0.5 488 4.0 HDGF FOXA2 ATF1 SIN3A FEZF1 ZNF2 YY1 GLIS2 ZNF143 ZNF207 ODF2L CLCA2 GC01P086383
GH01G086409 0.8 ENCODE 20 -13.3 -13301 0.9 FOSL1 ZFHX2 ZNF766 ZNF600 NFE2 EGR2 L3MBTL2 HLF NRF1 NR4A1 ODF2L LOC100420166 GC01M086406
GH01G086382 0.5 Ensembl 22.7 +13.1 13142 0.8 TBP IRF1 ZBTB40 CLCA2 ODF2L GC01P086383 MIR7856
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ODF2L on UCSC Golden Path with GeneCards custom track

Promoters for ODF2L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000009319 642 2601 HDGF FOXA2 ATF1 SIN3A FEZF1 ZNF2 YY1 GLIS2 ZNF143 FOS

Genomic Location for ODF2L Gene

Chromosome:
1
Start:
86,346,824 bp from pter
End:
86,396,342 bp from pter
Size:
49,519 bases
Orientation:
Minus strand

Genomic View for ODF2L Gene

Genes around ODF2L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ODF2L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ODF2L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ODF2L Gene

Proteins for ODF2L Gene

  • Protein details for ODF2L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9ULJ1-ODF2L_HUMAN
    Recommended name:
    Outer dense fiber protein 2-like
    Protein Accession:
    Q9ULJ1
    Secondary Accessions:
    • A8MU56
    • B4E037
    • Q05C40
    • Q5BJG5
    • Q5TBX3
    • Q5TBX4
    • Q86X31

    Protein attributes for ODF2L Gene

    Size:
    636 amino acids
    Molecular mass:
    73728 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH29420.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305}; Sequence=AAH47368.1; Type=Erroneous termination; Positions=397; Note=Translated as Glu.; Evidence={ECO:0000305}; Sequence=AK308351; Type=Frameshift; Positions=296; Evidence={ECO:0000305}; Sequence=BAA86543.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for ODF2L Gene

neXtProt entry for ODF2L Gene

Post-translational modifications for ODF2L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for ODF2L Gene

Domains & Families for ODF2L Gene

Protein Domains for ODF2L Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q9ULJ1

UniProtKB/Swiss-Prot:

ODF2L_HUMAN :
  • Belongs to the ODF2 family.
Family:
  • Belongs to the ODF2 family.
genes like me logo Genes that share domains with ODF2L: view

No data available for Gene Families for ODF2L Gene

Function for ODF2L Gene

genes like me logo Genes that share phenotypes with ODF2L: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ODF2L Gene

Localization for ODF2L Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ODF2L gene
Compartment Confidence
cytoskeleton 5
nucleus 4
cytosol 3

Gene Ontology (GO) - Cellular Components for ODF2L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005813 centrosome IDA 21399614
genes like me logo Genes that share ontologies with ODF2L: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for ODF2L Gene

Pathways & Interactions for ODF2L Gene

SuperPathways for ODF2L Gene

No Data Available

Interacting Proteins for ODF2L Gene

Gene Ontology (GO) - Biological Process for ODF2L Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ODF2L Gene

Transcripts for ODF2L Gene

Unigene Clusters for ODF2L Gene

Outer dense fiber of sperm tails 2-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ODF2L Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14
SP1: - - - -
SP2: -
SP3:
SP4: - - -
SP5: - -
SP6: -
SP7:

Relevant External Links for ODF2L Gene

GeneLoc Exon Structure for
ODF2L
ECgene alternative splicing isoforms for
ODF2L

Expression for ODF2L Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ODF2L Gene

Protein differential expression in normal tissues from HIPED for ODF2L Gene

This gene is overexpressed in Milk (68.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for ODF2L Gene



Protein tissue co-expression partners for ODF2L Gene

NURSA nuclear receptor signaling pathways regulating expression of ODF2L Gene:

ODF2L

SOURCE GeneReport for Unigene cluster for ODF2L Gene:

Hs.149360

Evidence on tissue expression from TISSUES for ODF2L Gene

  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with ODF2L: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for ODF2L Gene

Orthologs for ODF2L Gene

This gene was present in the common ancestor of chordates.

Orthologs for ODF2L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ODF2L 34 35
  • 99.35 (n)
dog
(Canis familiaris)
Mammalia ODF2L 34 35
  • 90.28 (n)
cow
(Bos Taurus)
Mammalia ODF2L 34 35
  • 90.19 (n)
mouse
(Mus musculus)
Mammalia Odf2l 34 16 35
  • 79.84 (n)
rat
(Rattus norvegicus)
Mammalia Odf2l 34
  • 79.44 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 51 (a)
OneToMany
-- 35
  • 46 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia ODF2L 35
  • 45 (a)
OneToOne
chicken
(Gallus gallus)
Aves ODF2L 34 35
  • 60.64 (n)
lizard
(Anolis carolinensis)
Reptilia ODF2L 35
  • 41 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia odf2l 34
  • 54.59 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 14 (a)
OneToMany
Species where no ortholog for ODF2L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for ODF2L Gene

ENSEMBL:
Gene Tree for ODF2L (if available)
TreeFam:
Gene Tree for ODF2L (if available)

Paralogs for ODF2L Gene

Paralogs for ODF2L Gene

(1) SIMAP similar genes for ODF2L Gene using alignment to 10 proteins:

genes like me logo Genes that share paralogs with ODF2L: view

Variants for ODF2L Gene

Sequence variations from dbSNP and Humsavar for ODF2L Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000017063 -- 86,349,039(+) ACTCT(-/TTAAAA)TTAAT intron-variant, downstream-variant-500B
rs1000043815 -- 86,372,860(+) AGTAA(C/T)TCAGG intron-variant
rs1000278189 -- 86,394,658(+) AAAGT(C/T)TGTCA intron-variant
rs1000306890 -- 86,348,979(+) ATAAT(C/T)CTTTT intron-variant, downstream-variant-500B
rs1000416816 -- 86,349,488(+) CTAGA(C/T)AGAAA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ODF2L Gene

Variant ID Type Subtype PubMed ID
esv2657167 CNV deletion 23128226
esv2714363 CNV deletion 23290073
esv2714374 CNV deletion 23290073
nsv1002541 CNV gain 25217958
nsv1161035 CNV duplication 26073780
nsv546722 CNV loss 21841781

Variation tolerance for ODF2L Gene

Residual Variation Intolerance Score: 81.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.33; 70.66% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ODF2L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ODF2L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ODF2L Gene

Disorders for ODF2L Gene

Relevant External Links for ODF2L

Genetic Association Database (GAD)
ODF2L
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ODF2L

No disorders were found for ODF2L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ODF2L Gene

Publications for ODF2L Gene

  1. Prediction of the coding sequences of unidentified human genes. XV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10574462) Nagase T. … Ohara O. (DNA Res. 1999) 2 3 4 64
  2. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert J.P. … Gingras A.C. (J Proteomics 2015) 3 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta G.D. … Pelletier L. (Cell 2015) 3 64
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64

Products for ODF2L Gene

Sources for ODF2L Gene

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