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Aliases & Descriptions for ODF2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Cenexin 3 FLJ44866 2 MGC111096 2 MGC9034 2 ODF2/1 2 ODF2/2 2 ODF84 1 , 2 , 5 OTTHUMP00000022273 2 OTTHUMP00000022274 2
Descriptions Outer dense fiber of sperm tails protein 2 3 cenexin 1 2 outer dense fiber of sperm tails 2 2 outer dense fiber of sperm tails, 84-kD 2 outer dense fibre of sperm tails 2 1 , 2 sperm tail structural protein 2
Search outside databases for aliases for ODF2 genePrevious GC identifers: GC09P122333 GC09P122864 GC09P124672 GC09P126595 GC09P126596 GC09P128297
Summaries for ODF2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for ODF2 : The outer dense fibers are cytoskeletal structures that surround the axoneme in the middle pieceand principal piece of the sperm tail. The fibers function in maintaining the elastic structureand recoil of the sperm tail as well as in protecting the tail from shear forces during epididymaltransport and ejaculation. Defects in the outer dense fibers lead to abnormal sperm morphology andinfertility. This gene encodes one of the major outer dense fiber proteins. Multiple proteinisoforms are encoded by transcript variants of this gene; however, not all isoforms and variantshave been fully described. [provided by RefSeq] UniProtKB/Swiss-Prot: ODFP2_HUMAN, Q5BJF6 Function : Seems to be a major component of sperm tail outer dense fibers (ODF). ODFs arefilamentous structures located on the outside of the axoneme in the midpiece and principal pieceof the mammalian sperm tail and may help to maintain the passive elastic structures and elasticrecoil of the sperm tail. May have a modulating influence on sperm motility. Functions as generalscaffold protein that is specifically localized at the distal/subdistal appendages of mothercentrioles. Component of the centrosome matrix is required for the localization of PLK1 and NIN tothe centrosomes. Required for the formation and/or maintenance of normal CETN1 assembly
Gene Wiki entry for ODF2
Genomic Location for ODF2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the ODF2 gene Entrez Gene cytogenetic band: 9q34.11 Ensembl cytogenetic band: 9q34.11 HGNC cytogenetic band: 9q34 ODF2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09P130258:
(about GC identifiers )
Start:
130,258,157 bp from pter
End:
130,303,060 bp from pter
Size:
44,904 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000009.10 NT_008470.18 Proteins for ODF2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ODFP2_HUMAN, Q5BJF6 (See
protein sequence )Recommended Name: Outer dense fiber protein 2 Size : 829 amino acids; 95401 Da
Subunit : Self-associates. Associates with microtubules and forms a fibrillar structure partiallylinked to the microtubule network. Interacts via its C-terminus with PLK1. Interacts with ODF1 (Bysimilarity)
Subcellular location : Centrosome. Cell projection, cilium. Note=Localized at the microtubuleorganizing centers in interphase and spindle poles in mitosis. Localized at the distal/subdistalappendages of mother centrioles
Secondary accessions : B4DRK4 B4DZ02 O14721 O60631 Q1W2J6 Q6UN26 Q7Z5I6 Q96FN2Alternative splicing : 6 isoforms : Q5BJF6-1 Q5BJF6-2 Q5BJF6-3 Q5BJF6-4 Q5BJF6-5 Q5BJF6-6
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_002531.3 NP_702915.1 ENSEMBL proteins: ENSP00000361901 ENSP00000361882 ENSP00000361877 ENSP00000377166 ENSP00000361893 ENSP00000307781 ENSP00000377161 ENSP00000342581 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: ODF2 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for ODF2: Assays for ODF2:
Protein
Domains/ Families for ODF2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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ProtoNet protein and cluster: Q5BJF6
UniProtKB/Swiss-Prot: ODFP2_HUMAN, Q5BJF6 Similarity : Belongs to the ODF2 family
Gene Function for ODF2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_153437 Applied Biosystems Silencer ® siRNAs for ODF2 Sigma-Aldrich siRNA for ODF2 Sigma-Aldrich shRNA for ODF2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002540                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002540                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_002540  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002540 UniProtKB/Swiss-Prot: ODFP2_HUMAN, Q5BJF6 Function : Seems to be a major component of sperm tail outer dense fibers (ODF). ODFs arefilamentous structures located on the outside of the axoneme in the midpiece and principal pieceof the mammalian sperm tail and may help to maintain the passive elastic structures and elasticrecoil of the sperm tail. May have a modulating influence on sperm motility. Functions as generalscaffold protein that is specifically localized at the distal/subdistal appendages of mothercentrioles. Component of the centrosome matrix is required for the localization of PLK1 and NIN tothe centrosomes. Required for the formation and/or maintenance of normal CETN1 assembly
Genatlas biochemistry entry for ODF2 :outer dense fiber protein 2,component of the filamentous structure of the sperm tail,expressed inround spermatids extending to about half the principal piece of tail sperm,involved in sperm tailfunction and motility
2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Odf2) :1 Gene Ontology (GO) molecular function term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005198 structural molecule activity
TAS 10072582
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Pathways & Interactions for ODF2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for ODF2 1 Interacting protein for ODF2 (ENSP00000361882 3 ) via UniProtKB, MINT, and/or STRING About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007275 multicellular organismal development
IEA -- GO:0007283 spermatogenesis
IEA -- GO:0030154 cell differentiation
IEA --
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Drugs & Compounds for ODF2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for ODF2
Transcripts for ODF2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_153437 Sigma-Aldrich siRNA for ODF2 Sigma-Aldrich shRNA for ODF2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_002540 NM_153437
REFSEQ mRNAs for ODF2 gene (2 alternative transcripts): NM_002540.3 NM_153437.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002540 NM_153437
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_002540                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_002540                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_002540  
Additional cDNA sequence: AF012549.1 AF053970.1 AK093367.1 AK126816.1 AK295662.1 AK299303.1 AK300793.1 AK301754.1 AK301842.1 AK301855.1 AK302684.1 AK308278.1 AK309917.1 AY319414.1 AY366499.1 BC010629.1 BC012785.2 BC091500.1 DQ444713.1 DQ444714.1
24/31 DOTS entries (see all 31
): DT.100027904 DT.441028 DT.101984564 DT.121155149 DT.40206733 DT.100812960 DT.101984565 DT.97847388 DT.91757262 DT.95155916 DT.95155907 DT.121155171 DT.91757256 DT.91757259 DT.100812956 DT.40213676 DT.40251440 DT.100768846 DT.91757257 DT.91757267 DT.95155914 DT.95155926 DT.40119153 DT.95155917
24/265 AceView cDNA sequences (see all 265
):BE793816 BI827718 BM928430 CB123358 BE869324 AI750706 AU185842 BQ226625 BM835331 AI671833 CD244287 AW438804 AL138381 BI826203 BM720731 BQ436203 BG110128 AI634153 BX283924 BU727859 AW614067 AI653099 BP374653 BX375038
highest scoring ESTs for ODF2 :AA034010 AI150254 AA034009 AA149882 AA150062 AA328560 AA331928 AA353533 AA437014 AA470814
Unigene Cluster for ODF2: Outer dense fiber of sperm tails 2 Hs.129055 [show with all ESTs ] Unigene Representative Sequence: NM_002540 GeneLoc Exon Structure 5/25 Alternative Splicing Database (ASD) splice patterns (SP) for ODF2 (see all 25
) ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c · 2d · 2e ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c · 9d · 9e · SP1 :           -   -   -   -   -   -   -   -   -         -       -             SP2 :           -   -   -   -   -   -   -   -   -   -     -   -       -             SP3 :                     -   -   -   -       -   -   -                 SP4 :                           -       -   -   -     -             SP5 :           -   -   -   -   -   -   -   -   -   -     -   -   -                
ExUns: 9f ^ 10a · 10b ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^ 21a · 21b ^ 22a · 22b ^ 23a · 23b · 23c · 23d ^ 24a · 24b · 24c · SP1 :           -             -           -     -   -   -     -   -       SP2 :           -             -           -     -   -   -     -   -       SP3 :           -             -           -     -   -   -     -   -       SP4 :           -             -           -                     SP5 :           -             -           -                    
ExUns: 24d ^ 25 ^ 26a · 26b SP1 :         SP2 :         SP3 :         SP4 :         SP5 :        
About this scheme ECgene alternative splicing isoforms for ODF2 8 Ensembl transcripts including schematic representations : ENST00000372814
ENST00000372796
ENST00000372791
ENST00000393533
ENST00000372807
ENST00000303890
ENST00000393527
ENST00000351030
Expression for ODF2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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ODF2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for ODF2 1 / 2 / 3
7 probe-sets matching ODF2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ACTTTGCTCCSOURCE GeneReport for Unigene cluster: Hs.129055 Expression variation in blood from EXPOLDB for ODF2
UniProtKB/Swiss-Prot: ODFP2_HUMAN, Q5BJF6 Tissue specificity : Testis-specific (at protein level). Highly expressed in cytoplasm of step 2round spermatids. Detected in the middle piece and extends to about half the principal piece ofthe sperm tails
Orthologs for ODF2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for ODF2 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for ODF2 ENSEMBL Gene Tree for ODF2 Paralogs for ODF2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for ODF2 gene ODF2L 2
SNPs/Variants for ODF2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for ODF2 (up to first 250kb)
Disorders & Mutations for ODF2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 602015
Medical News for ODF2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for ODF2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/14 PubMed articles for ODF2 gene (see all 14
): Requirement of hCenexin for proper mitotic functions of polo-like kinase 1 at the centrosomes. (PubMed id 16966375) 3, 4 Soung N.-K....Lee K.S. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) Outer dense fibre proteins from human sperm tail: molecular cloning and expression analyses of two cDNA transcripts encoding proteins of approximately 70 kDa. (PubMed id 10381817) 3, 4 Petersen C.... Hoyer-Fender S. (1999) Human outer dense fiber gene, ODF2, localizes to chromosome 9q34. (PubMed id 10072582) 2, 3 Shao X....van der Hoorn F.A. (1998) Interactional cloning of the 84-kDa major outer dense fiber protein Odf84. Leucine zippers mediate associations of Odf84 and Odf27. (PubMed id 9045620) 2, 3 Shao X....van der Hoorn F.A. (1997) Plk1-dependent and -independent roles of an ODF2 splice variant, hCenexin1, at the centrosome of somatic cells. (PubMed id 19386263) 3 Soung N.K....Lee K.S. (2009) Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348) 3 Barbe L....Andersson-Svahn H. (2008) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 4 Gerhard D.S....Malek J. (2004) Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935) 3 Beausoleil S.A....Gygi S.P. (2004) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 4 Humphray S.J.... Dunham I. (2004)
Search for ODF2
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Genome Databases showing ODF2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing ODF2
(According to HUGE )
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Specialized Databases showing ODF2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for ODF2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009