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Aliases & Descriptions for OCIAD1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Asrij 1 , 2 FLJ20455 1 , 2 MGC111072 2 OCIA 1 , 2 , 3 OTTHUMP00000128288 2 TPA018 1 , 2
Descriptions OCIA domain containing 1 2 Ovarian carcinoma immunoreactive antigen 2 , 3
Search outside databases for aliases for OCIAD1 genePrevious GC identifer: GC04P048674
Summaries for OCIAD1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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Genomic Location for OCIAD1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the OCIAD1 gene Entrez Gene cytogenetic band: 4p11 Ensembl cytogenetic band: 4p12 HGNC cytogenetic band: 4p11 OCIAD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04P048527:
(about GC identifiers )
Start:
48,527,772 bp from pter
End:
48,558,589 bp from pter
Size:
30,818 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000004.10 NT_006238.10 Proteins for OCIAD1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: OCAD1_HUMAN, Q9NX40 (See
protein sequence )Recommended Name: OCIA domain-containing protein 1 Size : 245 amino acids; 27626 Da
Subcellular location : Endosome (By similarity)
Secondary accessions : Q9BZE8Alternative splicing : 2 isoforms : Q9NX40-1 Q9NX40-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (5 alternative transcripts):
NP_001073308.1 NP_001073309.1 NP_001073310.1 NP_001073311.1 NP_060300.1 ENSEMBL proteins: ENSP00000370882 ENSP00000264312 ENSP00000379725 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 1 Gene Ontology (GO) cellular component term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005768 endosome
IEA --
About this table Antibodies for OCIAD1: Assays for OCIAD1:
Protein
Domains/ Families for OCIAD1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9NX40 ProtoNet protein and cluster: Q9NX40
UniProtKB/Swiss-Prot: OCAD1_HUMAN, Q9NX40 Similarity : Belongs to the OCIAD1 familySimilarity : Contains 1 OCIA domain
Gene Function for OCIAD1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_017830 Applied Biosystems Silencer ® siRNAs for OCIAD1 Sigma-Aldrich siRNA for OCIAD1 Sigma-Aldrich shRNA for OCIAD1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_001079839                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_001079839                                  untagged cDNA clones in CMV expression vector (see all 6 ): NM_001079839  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_017830 Pathways & Interactions for OCIAD1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Interacting proteins for OCIAD1 (ENSP00000264312 3 ) via UniProtKB, MINT, and/or STRING About this table
Drugs & Compounds for OCIAD1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for OCIAD1
Transcripts for OCIAD1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
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shRNA from
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OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 5 ): NM_017830 Sigma-Aldrich siRNA for OCIAD1 Sigma-Aldrich shRNA for OCIAD1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001079839 NM_001079840 NM_001079841 NM_001079842 NM_017830
REFSEQ mRNAs for OCIAD1 gene (5 alternative transcripts): NM_001079839.1 NM_001079840.1 NM_001079841.1 NM_001079842.1 NM_017830.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001079839 NM_001079840 NM_001079841 NM_001079842 NM_017830
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 5 ): NM_001079839                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 5 ): NM_001079839                                  untagged cDNA clones in CMV expression vector (see all 6 ): NM_001079839  
Additional cDNA sequence: AF251296.1 AF323665.1 AF324350.1 AK000462.1 AK024302.1 AK123529.1 AK297864.1 BC003409.1 BC088361.1 CR591070.1 CR592468.1 CR593373.1 CR599869.1 CR606711.1 CR612142.1 CR612891.1 CR614441.1 CR618578.1 CR621465.1 CR624767.1 CR624940.1 CR625789.1 CR626387.1
24/35 DOTS entries (see all 35
): DT.40229238 DT.100676158 DT.100872342 DT.95336231 DT.451735 DT.95336223 DT.100641694 DT.100864337 DT.97860024 DT.121272342 DT.40313820 DT.121272425 DT.40107202 DT.91931819 DT.92446122 DT.100676166 DT.121272385 DT.91881991 DT.97860026 DT.100676156 DT.100676167 DT.102844003 DT.121272343 DT.91809021
24/479 AceView cDNA sequences (see all 479
):BQ267326 CB164674 AA464695 BQ064594 AA405647 AA731128 AI123977 AI633473 BX339838 AI125169 CR626387 AI371024 AW342097 AL539411 BX107724 AA152292 BU070752 CR606711 NM_017830 T16347 BG678731 BQ716312 AA878212 AA902532
highest scoring ESTs for OCIAD1 :AA045036 AA098894 AA099856 AA131268 AA142975 AA143151 AA150234 AA151528 AA151608 AA152292
Unigene Cluster for OCIAD1: OCIA domain containing 1 Hs.518750 [show with all ESTs ] Unigene Representative Sequence: NM_001079839 GeneLoc Exon Structure 5/18 Alternative Splicing Database (ASD) splice patterns (SP) for OCIAD1 (see all 18
) ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b · 4c · 4d · 4e · 4f ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12 ^ SP1 :               -   -   -   -   -   -       -           -         -   -   SP2 :               -   -   -   -   -   -       -           -           -   SP3 :               -   -   -   -   -   -       -           -         -   -   SP4 :               -   -   -   -   -   -       -           -         -     SP5 :                               -           -         -   -  
ExUns: 13a · 13b · 13c · 13d ^ 14a · 14b · 14c · 14d SP1 :                 SP2 : -   -   -   -           SP3 : -   -   -   -           SP4 :                 SP5 :                
About this scheme ECgene alternative splicing isoforms for OCIAD1 3 Ensembl transcripts including schematic representations : ENST00000381473
ENST00000264312
ENST00000396448
Expression for OCIAD1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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OCIAD1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for OCIAD1 1 / 2 / 3
12 probe-sets matching OCIAD1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTGAATTGGGSOURCE GeneReport for Unigene cluster: Hs.518750 UniProtKB/Swiss-Prot: OCAD1_HUMAN, Q9NX40 Tissue specificity : Isoform 1 is highly expressed in many tissues, including testis, brain,placenta, ovary, prostate and mammary gland. Isoform 2 expression is restricted to the centralnervous system including brain, cerebellum and spinal cord,
Orthologs for OCIAD1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for OCIAD1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for OCIAD1 ENSEMBL Gene Tree for OCIAD1 Paralogs for OCIAD1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for OCIAD1 gene OCIAD2 2
SNPs/Variants for OCIAD1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for OCIAD1 (up to first 250kb)
Disorders & Mutations for OCIAD1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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Medical News for OCIAD1 (Possibly Related Articles in
Doctor's Guide )
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Publications for OCIAD1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/11 PubMed articles for OCIAD1 gene (see all 11
):
Search for OCIAD1
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing OCIAD1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing OCIAD1
(According to HUGE )
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Specialized Databases showing OCIAD1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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