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Aliases for OCEL1 Gene

Aliases for OCEL1 Gene

  • Occludin/ELL Domain Containing 1 2 3
  • Occludin/ELL Domain-Containing Protein 1 3
  • FWP009 3
  • S863-9 3

External Ids for OCEL1 Gene

Previous GeneCards Identifiers for OCEL1 Gene

  • GC19P017201
  • GC19P017337
  • GC19P016904

Summaries for OCEL1 Gene

GeneCards Summary for OCEL1 Gene

OCEL1 (Occludin/ELL Domain Containing 1) is a Protein Coding gene. An important paralog of this gene is ELL3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OCEL1 Gene

Genomics for OCEL1 Gene

Regulatory Elements for OCEL1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for OCEL1 Gene

Start:
17,226,204 bp from pter
End:
17,229,219 bp from pter
Size:
3,016 bases
Orientation:
Plus strand

Genomic View for OCEL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OCEL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OCEL1 Gene

Proteins for OCEL1 Gene

  • Protein details for OCEL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H607-OCEL1_HUMAN
    Recommended name:
    Occludin/ELL domain-containing protein 1
    Protein Accession:
    Q9H607
    Secondary Accessions:

    Protein attributes for OCEL1 Gene

    Size:
    264 amino acids
    Molecular mass:
    29404 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OCEL1 Gene

Proteomics data for OCEL1 Gene at MOPED

Post-translational modifications for OCEL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for OCEL1 Gene

Domains for OCEL1 Gene

Protein Domains for OCEL1 Gene

Suggested Antigen Peptide Sequences for OCEL1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9H607

UniProtKB/Swiss-Prot:

OCEL1_HUMAN :
  • Q9H607
Family:
  • Belongs to the ELL/occludin family.
genes like me logo Genes that share domains with OCEL1: view

No data available for Gene Families for OCEL1 Gene

Function for OCEL1 Gene

genes like me logo Genes that share phenotypes with OCEL1: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OCEL1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OCEL1 Gene

Localization for OCEL1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OCEL1 Gene COMPARTMENTS Subcellular localization image for OCEL1 gene
Compartment Confidence
nucleus 3
cytosol 2
golgi apparatus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for OCEL1 Gene

Pathways for OCEL1 Gene

SuperPathways for OCEL1 Gene

No Data Available

Interacting Proteins for OCEL1 Gene

Gene Ontology (GO) - Biological Process for OCEL1 Gene

None

No data available for Pathways by source for OCEL1 Gene

Transcripts for OCEL1 Gene

Unigene Clusters for OCEL1 Gene

Occludin/ELL domain containing 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OCEL1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for OCEL1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OCEL1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b · 7c
SP1: - - - -
SP2: - - - - - -
SP3: -
SP4: - -
SP5: -
SP6: - -
SP7: - -
SP8:
SP9: - - - -
SP10:

Relevant External Links for OCEL1 Gene

GeneLoc Exon Structure for
OCEL1
ECgene alternative splicing isoforms for
OCEL1

Expression for OCEL1 Gene

mRNA expression in normal human tissues for OCEL1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for OCEL1 Gene

SOURCE GeneReport for Unigene cluster for OCEL1 Gene Hs.422676

genes like me logo Genes that share expressions with OCEL1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for OCEL1 Gene

Orthologs for OCEL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for OCEL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia OCEL1 35
  • 99.49 (n)
  • 99.24 (a)
OCEL1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 74 (a)
OneToMany
-- 36
  • 79 (a)
OneToMany
OCEL1 35
  • 84.47 (n)
  • 78.64 (a)
dog
(Canis familiaris)
Mammalia OCEL1 35
  • 81.2 (n)
  • 73.57 (a)
OCEL1 36
  • 56 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ocel1 35
  • 76.42 (n)
  • 70.12 (a)
Ocel1 16
Ocel1 36
  • 59 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia OCEL1 36
  • 34 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ocel1 35
  • 75.7 (n)
  • 70.48 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 8 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii si:dkey-208k22.6 36
  • 12 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Su(Tpl) 36
  • 5 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1855 36
  • 13 (a)
OneToMany
Species with no ortholog for OCEL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for OCEL1 Gene

ENSEMBL:
Gene Tree for OCEL1 (if available)
TreeFam:
Gene Tree for OCEL1 (if available)

Paralogs for OCEL1 Gene

Paralogs for OCEL1 Gene

genes like me logo Genes that share paralogs with OCEL1: view

Variants for OCEL1 Gene

Sequence variations from dbSNP and Humsavar for OCEL1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs14129 -- 17,228,303(+) ATGAA(A/G)CGAAT synonymous-codon, reference
rs736127 -- 17,228,602(+) CTCCT(G/T)ACCTC intron-variant
rs736128 -- 17,228,626(+) ACCTC(A/G)GCCTC intron-variant
rs744067 -- 17,229,138(-) TCCCT(A/G)TAGGG utr-variant-3-prime
rs891201 -- 17,227,290(-) CTACT(C/G)TTTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for OCEL1 Gene

Variant ID Type Subtype PubMed ID
dgv3756n71 CNV Loss 21882294
nsv458373 CNV Loss 19166990
dgv3757n71 CNV Loss 21882294
dgv3758n71 CNV Loss 21882294
nsv911182 CNV Loss 21882294
nsv470129 CNV Loss 18288195
nsv911185 CNV Loss 21882294
nsv911186 CNV Gain 21882294
nsv828469 CNV Loss 20364138
nsv911188 CNV Loss 21882294

Relevant External Links for OCEL1 Gene

HapMap Linkage Disequilibrium report
OCEL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OCEL1 Gene

Disorders for OCEL1 Gene

No disorders were found for OCEL1 Gene.

No data available for UniProtKB/Swiss-Prot for OCEL1 Gene

Publications for OCEL1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3

Products for OCEL1 Gene

Sources for OCEL1 Gene

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