OCA2 Gene
protein-coding GIFtS : 62
GC15M025673
oculocutaneous albinism II (Previous names: oculocutaneous albinism II (pink-eye dilution (murine) homolog), eye color 3 (brown), eye color 2 (central brown), oculocutaneous albinism II (pink-eye dilution homolog, mouse) )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbols: D15S12, P, EYCL3, EYCL2 )
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Aliases & Descriptions for OCA2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases BEY 1 , 2 BEY1 1 , 2 BEY2 1 , 2 BOCA 2 , 5 D15S12 2 , 3 , 5 EYCL 1 , 2 EYCL2 2 EYCL3 2 , 5 HCL3 2 , 5 P 2 , 3 , 5 PED 2 , 5 SHEP1 2 , 5
Descriptions Melanocyte-specific transporter protein 2 , 3 Pink-eyed dilution protein homolog 3 eye color 2 (central brown) 1 , 2 eye color 3 (brown) 1 , 2 hair color 3 (brown) 2 oculocutaneous albinism II 2 oculocutaneous albinism II (pink-eye dilution (murine) homolog) 1 oculocutaneous albinism II (pink-eye dilution homolog, mouse) 1 , 2 total brown iris pigmentation 2
Search outside databases for aliases for OCA2 genePrevious GC identifers: GC15M024087 GC15M020867 GC15M025396 GC15M025602
Summaries for OCA2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for OCA2 : This gene encodes the human homologue of the mouse p (pink-eyed dilution) gene. The encoded proteinis believed to be an integral membrane protein involved in small molecule transport, specificallytyrosine - a precursor of melanin. Mutations in this gene result in type 2 oculocutaneousalbinism. [provided by RefSeq] UniProtKB/Swiss-Prot: P_HUMAN, Q04671 Function : Could be involved in the transport of tyrosine, the precursor to melanin synthesis,within the melanocyte. Regulates the pH of melanosome and the melanosome maturation. One of thecomponents of the mammalian pigmentary system. Seems to regulate the post-translational processingof tyrosinase, which catalyzes the limiting reaction in melanin synthesis. May serve as a keycontrol point at which ethnic skin color variation is determined. Major determinant of brownand/or blue eye color
Gene Wiki entry for OCA2
Genomic Location for OCA2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the OCA2 gene Entrez Gene cytogenetic band: 15q11.2-q12 Ensembl cytogenetic band: 15q13.1 HGNC cytogenetic band: 15q11.2-q12 OCA2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 15 GeneLoc Exon Structure
GeneLoc location for GC15M025673:
(about GC identifiers )
Start:
25,673,616 bp from pter
End:
26,018,053 bp from pter
Size:
344,438 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000015.8 NT_010280.17 Proteins for OCA2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: P_HUMAN, Q04671 (See
protein sequence )Recommended Name: P protein Size : 838 amino acids; 92850 Da
Subcellular location : Melanosome membrane; Multi-pass membrane protein
Secondary accessions : Q15211 Q15212 Q96EN1 Q9UMI5Alternative splicing : 3 isoforms : Q04671-1 Q04671-2 Q04671-3
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_000266.2 ENSEMBL proteins: ENSP00000372457 ENSP00000346659 ENSP00000261276 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for OCA2: Assays for OCA2:
Protein
Domains/ Families for OCA2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q04671 ProtoNet protein and cluster: Q04671
UniProtKB/Swiss-Prot: P_HUMAN, Q04671 Similarity : Belongs to the citM (TC 2.A.11) transporter family
Gene Function for OCA2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000275 Applied Biosystems Silencer ® siRNAs for OCA2 Sigma-Aldrich siRNA and siRNA Panels for OCA2 Sigma-Aldrich shRNA for OCA2 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000275                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000275                                  untagged cDNA clone in CMV expression vector: NM_000275  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000275 UniProtKB/Swiss-Prot: P_HUMAN, Q04671 Function : Could be involved in the transport of tyrosine, the precursor to melanin synthesis,within the melanocyte. Regulates the pH of melanosome and the melanosome maturation. One of thecomponents of the mammalian pigmentary system. Seems to regulate the post-translational processingof tyrosinase, which catalyzes the limiting reaction in melanin synthesis. May serve as a keycontrol point at which ethnic skin color variation is determined. Major determinant of brownand/or blue eye color
15/19 MGI mutant phenotypes (inferred from 64 alleles ) (MGI details for Oca2) (see all 19
):4 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for OCA2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for OCA2 5/29 Interacting proteins for OCA2 (ENSP00000346659 3 ) via UniProtKB, MINT, and/or STRING (see all 29
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for OCA2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for OCA2
Transcripts for OCA2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000275 Sigma-Aldrich siRNA and siRNA Panels for OCA2 Sigma-Aldrich shRNA for OCA2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000275
REFSEQ mRNAs for OCA2 gene: NM_000275.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000275
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000275                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000275                                  untagged cDNA clone in CMV expression vector: NM_000275  
Additional cDNA sequence: BC012097.1 M97901.1 M99564.1
5 DOTS entries : DT.211208 DT.97837707 DT.121054587 DT.40117136 DT.97837706
24/31 AceView cDNA sequences (see all 31
):M97901 NM_000275 M99564 BC012097 BG760895 BI549288 BM764701 T29709 BG765188 BX398277 H98884 BM695542 BG388843 CB994934 AA063005 BX283620 BU681148 AA062643 BM926459 AI097486 BU728954 BG478111 R52315 BX375094
highest scoring ESTs for OCA2 :M99564 BC012097 BG282272 BG388843 BG478111 BI549288 CB994934 AA062643 AA063005 AI097486
Unigene Cluster for OCA2: Oculocutaneous albinism II Hs.654411 [show with all ESTs ] Unigene Representative Sequence: NM_000275 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for OCA2 ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 SP1 :                   -                                 SP2 :                     -                              
About this scheme ECgene alternative splicing isoforms for OCA2 3 Ensembl transcripts including schematic representations : ENST00000382996
ENST00000354638
ENST00000353809
Expression for OCA2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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OCA2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for OCA2 1 / 2 / 3
3 probe-sets matching OCA2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTAAAATAATSOURCE GeneReport for Unigene cluster: Hs.654411 Expression variation in blood from EXPOLDB for OCA2
Orthologs for OCA2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for OCA2 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for OCA2 ENSEMBL Gene Tree for OCA2 Paralogs for OCA2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for OCA2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: P_HUMAN, Q04671 Polymorphism : Genetic variations in OCA2 are associated with skin/hair/eye pigmentation variabilitytype 1 (SHEP1) [MIM:227220]; also known as skin/hair/eye pigmentation type 1, blue/nonblue eyes orskin/hair/eye pigmentation type 1, blue/brown eyes or skin/hair/eye pigmentation type 1,blond/brown hair or eye color, brown/blue or eye color, blue/nonblue or eye color type 3 (EYCL3)or brown eye color type 2 (BEY2) or hair color type 3 (HCL3). Hair, eye and skin pigmentation areamong the most visible examples of human phenotypic variation, with a broad normal range that issubject to substantial geographic stratification. In the case of skin, individuals tend to havelighter pigmentation with increasing distance from the equator. By contrast, the majority ofvariation in human eye and hair color is found among individuals of European ancestry, with mostother human populations fixed for brown eyes and black hair
HapMap Linkage Disequilibrium images for OCA2 (up to first 250kb)
Disorders & Mutations for OCA2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 611409 disorders : 203200 203200 227220 227220 UniProtKB/Swiss-Prot: P_HUMAN, Q04671
Defects in OCA2 are the cause of oculocutaneous albinism type 2 (OCA2) [MIM:203200]. OCA2is an autosomal recessive form of albinism, a disorder of pigmentation in the skin, hair, andeyes. The phenotype of patients with OCA2 is typically somewhat less severe than in those withtyrosinase-deficient OCA1. There are several forms of OCA2, from typical OCA to relatively mild'autosomal recessive ocular albinism' (AROA). OCA2 is the most prevalent type of albinismthroughout the world The gene OCA2 is localized to chromosome 15 at 15q11.2-q12, a region associated withPrader-Willi and Angelman syndromes, suggesting that altered expression of the OCA2 gene may beresponsible for the hypopygmentation phenotype exhibited by certain individuals with thesedisorders Human pigmentation, including eye color, has been associated with skin cancer risk
5 Novoseek disease relationships for OCA2 gene
About this table Genatlas disease: OCA2 albinism,oculocutaneous 2,tyrosinase positive,most common,autosomal recessive disorder amongsouthern African Blacks also including a milder hypopigmentation phenotype known as the brownoculocutaneous albinism GeneTests: OCA2 Oculocutaneous Albinism Type 2 Human Gene Mutation Database : OCA2 Genetic Association Database: OCA2 Human Genome Epidemiology Navigator: OCA2 (22 documents)
Medical News for OCA2 (Possibly Related Articles in
Doctor's Guide )
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Publications for OCA2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/93 PubMed articles for OCA2 gene (see all 93
): Allele variations in the OCA2 gene (pink-eyed-dilution locus) are associated with genetic susceptibility to melanoma. (PubMed id 15889046) 1, 3, 4, 6 Jannot A.-S.... Soufir N. (2005) A three-single-nucleotide polymorphism haplotype in intron 1 of OCA2 explains most human eye-color variation. (PubMed id 17236130) 1, 3, 4 Duffy D.L.... Sturm R.A. (2007) The mouse p (pink-eyed dilution) and human P genes, oculocutaneous albinism type 2 (OCA2), and melanosomal pH. (PubMed id 11310796) 1, 3, 4 Brilliant M.H. (2001) Three genome-wide association studies and a linkage analysis identify HERC2 as a human iris color gene. (PubMed id 18252221) 3, 4 Kayser M.... van Duijn C.M. (2008) A single SNP in an evolutionary conserved region within intron 86 of the HERC2 gene determines human blue-brown eye color. (PubMed id 18252222) 3, 4 Sturm R.A....Montgomery G.W. (2008) Genetic determinants of hair, eye and skin pigmentation in Europeans. (PubMed id 17952075) 3, 4 Sulem P.... Stefansson K. (2007) Eye colour: portals into pigmentation genes and ancestry. (PubMed id 15262401) 3, 4 Sturm R.A. and Frudakis T.N. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) MC1R mutations modify the classic phenotype of oculocutaneous albinism type 2 (OCA2). (PubMed id 12876664) 3, 4 King R.A.... Oetting W.S. (2003) A novel P gene missense mutation in a Japanese patient with oculocutaneous albinism type II (OCA2). (PubMed id 12727022) 3, 4 Kato A....Ishii M. (2003)
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Genome Databases showing OCA2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing OCA2
(According to HUGE )
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Specialized Databases showing OCA2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Mutations of the P gene http://www.retina-international.com/sci-news/pgenemut.htm Albinism database (ADB) http://albinismdb.med.umn.edu/oca2mut.html Protein Spotlight http://www.expasy.org/spotlight/back_issues/sptlt054.shtml GeneReviews http://www.genetests.org/query?gene=OCA2
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-- Services for OCA2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for OCA2:
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