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Aliases & Descriptions for OAS1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases E18/E16 3 EC 2.7.7.- 3 IFI-4 1 , 2 OIAS 2 , 3 , 5 OIASI 1 , 2
Descriptions (2-5')oligo(A) synthetase 1 3 2',5'-oligo A synthetase 1 2 2',5'-oligoadenylate synthetase 1 2 2',5'-oligoadenylate synthetase 1 (40-46 kD) 1 , 2 2',5'-oligoadenylate synthetase 1, 40/46kDa 2 2'-5' oligoadenylate synthetase 1 p48 isoform 2 2'-5' oligoadenylate synthetase 1 p52 isoform 2 2'-5'-oligoisoadenylate synthetase 1 2 2-5A synthetase 1 2 , 3 p46/p42 OAS 3
Search outside databases for aliases for OAS1 genePrevious GC identifers: GC12P112239 GC12P112864 GC12P113127 GC12P111756
Summaries for OAS1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for OAS1 : This gene encodes a member of the 2-5A synthetase family, essential proteins involved in the innateimmune response to viral infection. The encoded protein is induced by interferons and usesadenosine triphosphate in 2'-specific nucleotidyl transfer reactions to synthesize2',5'-oligoadenylates (2-5As). These molecules activate latent RNase L, which results inviral RNA degradation and the inhibition of viral replication. The three known members of thisgene family are located in a cluster on chromosome 12. Mutations in this gene have been associatedwith host susceptibility to viral infection. Alternatively spliced transcript variants encodingdifferent isoforms have been described. [provided by RefSeq] UniProtKB/Swiss-Prot: OAS1_HUMAN, P00973 Function : May play a role in mediating resistance to virus infection, control of cell growth,differentiation, and apoptosis
Gene Wiki entry for OAS1
Genomic Location for OAS1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the OAS1 gene Entrez Gene cytogenetic band: 12q24.1 Ensembl cytogenetic band: 12q24.13 HGNC cytogenetic band: 12q24.2 OAS1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12P111807:
(about GC identifiers )
Start:
111,829,122 bp from pter
End:
111,854,177 bp from pter
Size:
25,056 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000012.10 NT_009775.16 Proteins for OAS1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: OAS1_HUMAN, P00973 (See
protein sequence )Recommended Name: 2'-5'-oligoadenylate synthetase 1 Size : 400 amino acids; 46059 Da
Subunit : Homotetramer
Subcellular location : Mitochondrion. Nucleus. Microsome. Endoplasmic reticulum. Note=Associatedwith different subcellular fractions such as mitochondrial, nuclear, and rough/smooth microsomalfractions
Caution : PubMed:1651324 sequence was originally thought to originate from mouse
Sequence caution : Sequence=CAA26497.1; Type=Frameshift; Positions=400;
Secondary accessions : A8K4N8 P04820 P29080 P29081 P78485 P78486 Q16700 Q16701 Q1PG42 Q3ZM01 Q53GC5Q53YA4 Q6A1Z3 Q6IPC6 Q6P7N9 Q96J61 Alternative splicing : 4 isoforms : P00973-1 P00973-2 P00973-3 P00973-4
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001027581.1 NP_002525.2 NP_058132.2 ENSEMBL proteins: ENSP00000366730 ENSP00000355339 ENSP00000202917 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: OAS1 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for OAS1: Assays for OAS1:
Protein
Domains/ Families for OAS1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P00973 ProtoNet protein and cluster: P00973
1 Blocks protein family : IPB006117 2-5-oligoadenylate synthetase UniProtKB/Swiss-Prot: OAS1_HUMAN, P00973 Similarity : Belongs to the 2-5A synthetase family
Gene Function for OAS1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
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RNAi Products ,
Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002534 Applied Biosystems Silencer ® siRNAs for OAS1 Sigma-Aldrich siRNA for OAS1 Sigma-Aldrich shRNA for OAS1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001032409                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001032409                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001032409  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001032409 UniProtKB/Swiss-Prot: OAS1_HUMAN, P00973 Function : May play a role in mediating resistance to virus infection, control of cell growth,differentiation, and apoptosis Catalytic activity : Binds double-stranded RNA and polymerizes ATP into PPP(A2'P5'A)N oligomers,which activate the latent RNase L that, when activated, cleaves single-stranded RNAs Induction : By interferonsEnzyme Number (IUBMB): EC 2.7.7.-
Genatlas biochemistry entry for OAS1 :2',5'-oligoisoadenylate synthetase 1,40kDa,46kDa,ubiquitously expressed,interferon induced 4 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for OAS1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for OAS1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for OAS1 5/9 Interacting proteins for OAS1 (ENSP00000202917 3 ) via UniProtKB, MINT, and/or STRING (see all 9
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
TAS 2440675 GO:0006955 immune response
IEA --
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Drugs & Compounds for OAS1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for OAS1 1 Novoseek chemical compound relationship for OAS1 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
atp
14.94
1
18421422 (1)
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Transcripts for OAS1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_002534 Sigma-Aldrich siRNA for OAS1 Sigma-Aldrich shRNA for OAS1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001032409 NM_002534 NM_016816
REFSEQ mRNAs for OAS1 gene (3 alternative transcripts): NM_001032409.1 NM_002534.2 NM_016816.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001032409 NM_002534 NM_016816
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001032409                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001032409                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001032409  
Additional cDNA sequence: AJ629455.1 AK223006.1 AK225384.1 AK291003.1 AK300346.1 AK301498.1 AY730627.1 AY730628.1 BC000562.2 BC061587.1 BC071981.1 BT006785.1 CR590221.1 CR603997.1 CR613331.1 CR621070.1 CR626748.1 D00068.1 DQ914956.1 X02661.1 X02874.1 X02875.1 X04371.1
9 DOTS entries : DT.451807 DT.100788721 DT.100788724 DT.91853434 DT.86852717 DT.75169681 DT.40224009 DT.100788722 DT.95300092
24/308 AceView cDNA sequences (see all 308
):AL560677 CF272298 BC000562 CB119011 AL582281 BM754633 AA968953 AI424175 AW627809 AV654890 CA311314 AU098772 AA872654 AU076579 AA947218 BI909291 CR603997 BQ233142 CD366298 CR621070 CA427212 CD368533 BX104328 BE295499
highest scoring ESTs for OAS1 :AA053004 AA586776 AA721487 AA812259 AI214259 AI247323 AI687538 AI806136 AI832458 AI859271
Unigene Cluster for OAS1: 2',5'-oligoadenylate synthetase 1, 40/46kDa Hs.524760 [show with all ESTs ] Unigene Representative Sequence: NM_016816 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for OAS1 (see all 7
) ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8 ^ 9 SP1 :           -               -   -   -     SP2 :           -                       SP3 :           -               -   -       SP4 :                         -         SP5 :           -   -                    
About this scheme ECgene alternative splicing isoforms for OAS1 3 Ensembl transcripts including schematic representations : ENST00000377508
ENST00000361629
ENST00000202917
Expression for OAS1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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OAS1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for OAS1 1 / 2 / 3
6 probe-sets matching OAS1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGTACCCTCASOURCE GeneReport for Unigene cluster: Hs.524760 Expression variation in blood from EXPOLDB for OAS1
Orthologs for OAS1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for OAS1 gene from 4 species
About this table Species with no ortholog for OAS1 ENSEMBL Gene Tree for OAS1 Paralogs for OAS1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for OAS1 gene OAS2 2 OASL 2 OAS3 2
SNPs/Variants for OAS1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for OAS1 (up to first 250kb)
Disorders & Mutations for OAS1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 164350
2 Novoseek disease relationships for OAS1 gene
About this table Human Gene Mutation Database : OAS1 Genetic Association Database: OAS1 Human Genome Epidemiology Navigator: OAS1 (9 documents)
Medical News for OAS1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for OAS1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/61 PubMed articles for OAS1 gene (see all 61
): Type 1 diabetes and the OAS gene cluster: association with splicing polymorphism or haplotype? (PubMed id 16014697) 1, 3, 6 Tessier M.C....Polychronakos C. (2006) Polymorphisms of interferon-inducible genes OAS-1 and MxA associated with SARS in the Vietnamese population. (PubMed id 15766558) 1, 3, 6 Hamano E....Keicho N. (2005) Polymorphisms in interferon-induced genes and the outcome of hepatitis C virus infection: roles of MxA, OAS-1 and PKR. (PubMed id 12944978) 1, 3, 6 Knapp S....Thursz M.R. (2003) The finished DNA sequence of human chromosome 12. (PubMed id 16541075) 3, 4 Scherer S.E.... Gibbs R.A. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 3, 4 Ota T....Sugano S. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Genetic polymorphisms in interferon pathway and response to interferon treatment in hepatitis B patients: A pilot study. (PubMed id 12447867) 3, 6 King J.K....Chen P.J. (2002) The nature of the catalytic domain of 2'-5'-oligoadenylate synthetases. (PubMed id 10464285) 3, 4 Sarkar S.N.... Sen G.C. (1999) Enzymatic activity of 2'-5'-oligoadenylate synthetase is impaired by specific mutations that affect oligomerization of the protein. (PubMed id 9407111) 3, 4 Ghosh A.... Sen G.C. (1997) Cloning, sequencing, and expression of two murine 2'-5'- oligoadenylate synthetases. Structure-function relationships. (PubMed id 1651324) 3, 4 Ghosh S.K....Sen G.C. (1991)
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Genome Databases showing OAS1
(According to
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euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
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Other Databases showing OAS1
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Specialized Databases showing OAS1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for OAS1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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