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Aliases for OACYLP Gene

Aliases for OACYLP Gene

  • O-Acyltransferase Like, Pseudogene 2 3 5
  • Acyltransferase 3, Pseudogene 2 3
  • ACYL3 Pseudogene 3
  • ACYL3P 3

External Ids for OACYLP Gene

Previous GeneCards Identifiers for OACYLP Gene

  • GC18P056665

Summaries for OACYLP Gene

Entrez Gene Summary for OACYLP Gene

  • This gene is ancient and exists in archaea, bacteria, fungi, worms, flies, and mammals. The gene has been inactivated by mutation and is nonfunctional in humans and chimpanzees. [provided by RefSeq, Oct 2008]

GeneCards Summary for OACYLP Gene

OACYLP (O-Acyltransferase Like, Pseudogene) is a Pseudogene.

Additional gene information for OACYLP Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OACYLP Gene

Genomics for OACYLP Gene

GeneHancer (GH) Regulatory Elements for OACYLP Gene

Promoters and enhancers for OACYLP Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I058995 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.6 562 4.6 JUN HLF BACH1 REST DPF2 RAD21 JUND IKZF1 RUNX3 SPI1 OACYLP ENSG00000199713 ENSG00000267215
GH18I058990 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 -4.3 -4273 4.3 BMI1 BATF IRF4 RAD21 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 CBFB OACYLP RNU2-69P
GH18I059004 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.0 9034 1.9 SP1 JUND GATA3 FOXP2 NR2F2 OACYLP ENSG00000267215
GH18I058963 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -31.4 -31369 4.2 PKNOX1 ZSCAN4 EBF1 RELA POLR2A BCLAF1 IKZF2 RUNX3 SRF PAF1 ZNF532 OACYLP RNU2-69P
GH18I059007 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +11.8 11793 1.8 SP1 PKNOX1 JUND GATA3 RFX1 ATF3 FOSL2 ENSG00000199713 ZNF532 OACYLP ENSG00000267215
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around OACYLP on UCSC Golden Path with GeneCards custom track

Genomic Locations for OACYLP Gene

Genomic Locations for OACYLP Gene
chr18:58,996,734-59,069,338
(GRCh38/hg38)
Size:
72,605 bases
Orientation:
Plus strand
chr18:56,663,966-56,736,570
(GRCh37/hg19)

Genomic View for OACYLP Gene

Genes around OACYLP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OACYLP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OACYLP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OACYLP Gene

Proteins for OACYLP Gene

Post-translational modifications for OACYLP Gene

No Post-translational modifications

No data available for DME Specific Peptides for OACYLP Gene

Domains & Families for OACYLP Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OACYLP Gene

Function for OACYLP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OACYLP Gene

Localization for OACYLP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OACYLP Gene

Pathways & Interactions for OACYLP Gene

SuperPathways for OACYLP Gene

No Data Available

Interacting Proteins for OACYLP Gene

Gene Ontology (GO) - Biological Process for OACYLP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OACYLP Gene

Drugs & Compounds for OACYLP Gene

No Compound Related Data Available

Transcripts for OACYLP Gene

mRNA/cDNA for OACYLP Gene

(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OACYLP Gene

O-acyltransferase like, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OACYLP Gene

No ASD Table

Relevant External Links for OACYLP Gene

GeneLoc Exon Structure for
OACYLP
ECgene alternative splicing isoforms for
OACYLP

Expression for OACYLP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OACYLP Gene

mRNA differential expression in normal tissues according to GTEx for OACYLP Gene

This gene is overexpressed in Prostate (x18.0).

NURSA nuclear receptor signaling pathways regulating expression of OACYLP Gene:

OACYLP

SOURCE GeneReport for Unigene cluster for OACYLP Gene:

Hs.722775
genes like me logo Genes that share expression patterns with OACYLP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OACYLP Gene

Orthologs for OACYLP Gene

Evolution for OACYLP Gene

ENSEMBL:
Gene Tree for OACYLP (if available)
TreeFam:
Gene Tree for OACYLP (if available)

No data available for Orthologs for OACYLP Gene

Paralogs for OACYLP Gene

No data available for Paralogs for OACYLP Gene

Variants for OACYLP Gene

Sequence variations from dbSNP and Humsavar for OACYLP Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000129409 -- 59,037,086(+) T/C intron_variant
rs1000367725 -- 59,050,188(+) A/G intron_variant
rs1000488150 -- 59,034,922(+) T/G upstream_transcript_variant
rs1000519100 -- 59,034,725(+) T/G upstream_transcript_variant
rs1000685240 -- 59,043,811(+) G/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for OACYLP Gene

Variant ID Type Subtype PubMed ID
nsv130933 CNV deletion 16902084
nsv833664 CNV loss 17160897

Additional Variant Information for OACYLP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OACYLP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OACYLP Gene

Disorders for OACYLP Gene

Additional Disease Information for OACYLP

No disorders were found for OACYLP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OACYLP Gene

Publications for OACYLP Gene

  1. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 2 3 58
  2. Comparative genomics search for losses of long-established genes on the human lineage. (PMID: 18085818) Zhu J … Haussler D (PLoS computational biology 2007) 2 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for OACYLP Gene

Sources for OACYLP Gene

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