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Aliases & Descriptions for NET1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ARHGEF8 1 , 2 , 3 NAT1 5 NET1A 1 , 2 OTTHUMP00000019002 2 OTTHUMP00000019003 2 SLC6A2 5
Descriptions Rho guanine nucleotide exchange factor (GEF) 8 2 Rho guanine nucleotide exchange factor 8 3 guanine nucleotide regulatory protein (oncogene) 2 neuroepithelial cell transforming 1 2 neuroepithelial cell transforming gene 1 2 neuroepithelioma transforming gene 1 2 p65 Net1 proto-oncogene 3 p65 Net1 proto-oncogene protein 2 small GTP-binding protein regulator 2
Search outside databases for aliases for NET1 genePrevious GC identifers: GC10M005513 GC10P005428 GC10P005554 GC10P005408
Summaries for NET1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: ARHG8_HUMAN, Q7Z628 Function : Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase. May be involved inactivation of the SAPK/JNK pathway (By similarity)
Gene Wiki entry for NET1
Genomic Location for NET1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the NET1 gene Entrez Gene cytogenetic band: 10p15 Ensembl cytogenetic band: 10p15.1 HGNC cytogenetic band: 10p15 NET1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P005444:
(about GC identifiers )
Start:
5,444,518 bp from pter
End:
5,490,426 bp from pter
Size:
45,909 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.9 NT_077567.3 Proteins for NET1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: ARHG8_HUMAN, Q7Z628 (See
protein sequence )Recommended Name: Neuroepithelial cell-transforming gene 1 protein Size : 596 amino acids; 67740 Da
Subunit : Interacts with RHOA in its GTP- and GDP-bound states, and with CDC42 in its GTP-boundstate. Interacts with the PDZ 1 domain of BAIAP1 (By similarity)
Subcellular location : Cytoplasm (By similarity). Nucleus (By similarity)
Sequence caution : Sequence=AAB08847.1; Type=Frameshift; Positions=586; Sequence=AAB37683.1;Type=Frameshift; Positions=15, 33; Sequence=CAA08974.1; Type=Frameshift; Positions=8, 55, 59, 70,586;
PDB structures from and Proteopedia : 3EO2 (3D)
 
Secondary accessions : Q12773 Q96D82 Q99903 Q9UEN6Alternative splicing : 2 isoforms : Q7Z628-1 Q7Z628-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001040625.1 NP_005854.2 ENSEMBL proteins: ENSP00000369694 ENSP00000369717 ENSP00000347134 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for NET1: Assays for NET1:
Protein
Domains/ Families for NET1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q7Z628 ProtoNet protein and cluster: Q7Z628
2 Blocks protein families : IPB000219 DH domain IPB001849 Pleckstrin-like UniProtKB/Swiss-Prot: ARHG8_HUMAN, Q7Z628 Similarity : Contains 1 DH (DBL-homology) domainSimilarity : Contains 1 PH domain
Gene Function for NET1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001047160 Applied Biosystems Silencer ® siRNAs for NET1 Sigma-Aldrich siRNA for NET1 Sigma-Aldrich shRNA for NET1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001047160                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001047160                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001047160  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001047160 UniProtKB/Swiss-Prot: ARHG8_HUMAN, Q7Z628 Function : Acts as guanine nucleotide exchange factor (GEF) for RhoA GTPase. May be involved inactivation of the SAPK/JNK pathway (By similarity) Induction : By TGF-beta
2 Gene Ontology (GO) molecular function terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0005085 guanyl-nucleotide exchange factor activity
TAS 8649828 GO:0005089 Rho guanyl-nucleotide exchange factor activity
IEA --
About this table
Pathways & Interactions for NET1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for NET1 5/81 Interacting proteins for NET1 (ENSP00000347134 3 ) via UniProtKB, MINT, and/or STRING (see all 81
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0001558 regulation of cell growth
NAS 8649828 GO:0007242 intracellular signaling cascade
IEA -- GO:0035023 regulation of Rho protein signal transduction
IEA --
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Drugs & Compounds for NET1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for NET1
Transcripts for NET1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001047160 Sigma-Aldrich siRNA for NET1 Sigma-Aldrich shRNA for NET1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001047160 NM_005863
REFSEQ mRNAs for NET1 gene (2 alternative transcripts): NM_001047160.1 NM_005863.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001047160 NM_005863
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001047160                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001047160                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001047160  
Additional cDNA sequence: AB209852.1 AJ010046.1 AK024919.1 AK294244.1 AK299335.1 AK302687.1 AK304028.1 AK315566.1 BC010285.1 BC053553.1 S82401.1 U02081.1
18 DOTS entries : DT.97860210 DT.455207 DT.86838054 DT.100792472 DT.99991536 DT.455206 DT.97810157 DT.121221194 DT.95301494 DT.102826903 DT.121221244 DT.40279022 DT.92447449 DT.121221239 DT.121221261 DT.92384021 DT.97860209 DT.447089
24/386 AceView cDNA sequences (see all 386
):AI610995 CA391308 BQ181013 CB851085 BP376957 AI886132 AU130957 AW771003 BE645597 CA392582 BM802639 AA630998 BQ024362 AW675637 CA489179 CB119951 BM771515 AA025841 AU125526 BG770848 AU280423 AA831287 BG675849 CK429832
highest scoring ESTs for NET1 :AJ010046 AA025841 AA025842 AA039870 AA040233 AA042891 AA062769 AA074082 AA082428 AA196448
Unigene Cluster for NET1: Neuroepithelial cell transforming 1 Hs.25155 [show with all ESTs ] Unigene Representative Sequence: NM_001047160 GeneLoc Exon Structure 5/10 Alternative Splicing Database (ASD) splice patterns (SP) for NET1 (see all 10
) ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14 SP1 :           -   -       -     -   -                     -     SP2 :                   -     -   -                     -     SP3 :           -   -       -     -                           SP4 :             -                                     SP5 :                                             -    
About this scheme ECgene alternative splicing isoforms for NET1 3 Ensembl transcripts including schematic representations : ENST00000380337
ENST00000380359
ENST00000355029
Expression for NET1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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NET1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for NET1 1 / 2 / 3
5 probe-sets matching NET1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAATGGCTTGSOURCE GeneReport for Unigene cluster: Hs.25155 Expression variation in blood from EXPOLDB for NET1
UniProtKB/Swiss-Prot: ARHG8_HUMAN, Q7Z628 Tissue specificity : Widely expressed
Orthologs for NET1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for NET1 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for NET1 ENSEMBL Gene Tree for NET1 Paralogs for NET1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for NET1 gene ARHGEF3 2
SNPs/Variants for NET1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for NET1 (up to first 250kb)
Disorders & Mutations for NET1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 163970 disorders : 604715
1 Novoseek disease relationship for NET1 gene
About this table Genetic Association Database: NET1 Human Genome Epidemiology Navigator: NET1 (60 documents)
Medical News for NET1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for NET1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/27 PubMed articles for NET1 gene (see all 27
): Isolation of a novel oncogene, NET1, from neuroepithelioma cells by expression cDNA cloning. (PubMed id 8649828) 1, 2, 3, 4 Chan A.M.-L.... Miki T. (1996) Support for association between ADHD and two candidate genes: NET1 and DRD1. (PubMed id 15717291) 3, 6 Bobb A.J....Rapoport J.L. (2005) DNA pooling analysis of 21 norepinephrine transporter gene SNPs with attention deficit hyperactivity disorder: no evidence for association. (PubMed id 15719398) 3, 6 Xu X....Asherson P. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The activity of guanine exchange factor NET1 is essential for transforming growth factor-beta-mediated stress fiber formation. (PubMed id 11278519) 3, 4 Shen X.... Wang X.-F. (2001) Expression and clinical significance of NET-1 and PCNA in hepatocellular carcinoma. (PubMed id 18214716) 1, 3 Shen S.Q....Nakao A. (2008) Characterization of the biochemical and transforming properties of the neuroepithelial transforming protein 1. (PubMed id 15611121) 1, 3 Qin H....Frost J.A. (2005) The nuclear RhoA exchange factor Net1 interacts with proteins of the Dlg family, affects their localization, and influences their tumor suppressor activity. (PubMed id 17938206) 1, 3 Garcia-Mata R....Burridge K. (2007) Coexpression of alpha6beta4 integrin and guanine nucleotide exchange factor Net1 identifies node-positive breast cancer patients at high risk for distant metastasis. (PubMed id 19124484) 1, 3 Gilcrease M.Z....Frost J.A. (2009) A bacterial cytotoxin identifies the RhoA exchange factor Net1 as a key effector in the response to DNA damage. (PubMed id 18509476) 1, 3 Guerra L....Frisan T. (2008)
Search for NET1
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Genome Databases showing NET1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing NET1
(According to HUGE )
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--
Specialized Databases showing NET1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for NET1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for NET1:
Recombinant Proteins (NET1 ) Antibodies (NET1 )
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Incremental update: 13 Oct 2009