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Aliases for NXPH3 Gene

Aliases for NXPH3 Gene

  • Neurexophilin 3 2 3 5
  • NPH3 3 4
  • Neurexophilin-3 3
  • KIAA1159 4

External Ids for NXPH3 Gene

Previous GeneCards Identifiers for NXPH3 Gene

  • GC17P047364
  • GC17P050133
  • GC17P047995
  • GC17P048127
  • GC17P045008
  • GC17P047653
  • GC17P043018

Summaries for NXPH3 Gene

GeneCards Summary for NXPH3 Gene

NXPH3 (Neurexophilin 3) is a Protein Coding gene. GO annotations related to this gene include receptor binding. An important paralog of this gene is NXPH1.

UniProtKB/Swiss-Prot for NXPH3 Gene

  • May be signaling molecules that resemble neuropeptides. Ligand for alpha-neurexins (By similarity).

Gene Wiki entry for NXPH3 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NXPH3 Gene

Genomics for NXPH3 Gene

Regulatory Elements for NXPH3 Gene

Enhancers for NXPH3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F049687 0.9 FANTOM5 Ensembl ENCODE 12.4 +113.9 113866 5.4 ELF3 MLX ARID4B DMAP1 ZSCAN9 DNMT3B RARA SLC30A9 ZNF366 SCRT2 FLJ45513 ENSG00000262837 FAM117A NXPH3 LOC100288866 PHB COL1A1 ENSG00000250186 RPL21P124 SPOP
GH17F049695 1 Ensembl ENCODE 12.2 +120.2 120164 2.0 HDGF TBL1XR1 BMI1 ZNF48 RAD21 RFX5 EGR1 ZNF143 CREM DEK LOC100288866 NXPH3 ENSG00000250310 PHB ENSG00000207127 RPL21P124 ENSG00000250186 DLX3 ENSG00000248172 GC17P049692
GH17F049596 0.4 ENCODE 11.9 +20.8 20807 1.2 SOX13 ESRRA ZNF644 DNMT3B CTBP1 GATA3 POLR2A FOS RCOR1 PRDM10 NXPH3 LOC100288866 SPOP SLC35B1 PHB ENSG00000250186 RPL21P124 DLX3 ENSG00000248172 GC17P049596
GH17F049637 0.2 Ensembl 11.9 +61.6 61643 1.0 CTCF HDGF PKNOX1 ZNF48 ZFHX2 ZNF207 EGR2 ZNF362 MTA2 BHLHE40 FLJ45513 NXPH3 LOC100288866 SPOP GC17P049596
GH17F049638 0.2 ENCODE 11.4 +63.3 63323 0.8 ZNF680 SPOP NXPH3 LOC100288866 SLC35B1 PHB ENSG00000250186 RPL21P124 GC17P049596
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NXPH3 on UCSC Golden Path with GeneCards custom track

Promoters for NXPH3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001348493 442 1801 ARID4B SIN3A ZNF2 ZNF121 GLIS2 ZNF416 ZNF143 ZNF207 KLF7 KLF13

Genomic Location for NXPH3 Gene

Chromosome:
17
Start:
49,575,858 bp from pter
End:
49,583,827 bp from pter
Size:
7,970 bases
Orientation:
Plus strand

Genomic View for NXPH3 Gene

Genes around NXPH3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NXPH3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NXPH3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NXPH3 Gene

Proteins for NXPH3 Gene

  • Protein details for NXPH3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95157-NXPH3_HUMAN
    Recommended name:
    Neurexophilin-3
    Protein Accession:
    O95157
    Secondary Accessions:
    • Q8NDC3
    • Q8TBF6
    • Q9ULR1

    Protein attributes for NXPH3 Gene

    Size:
    252 amino acids
    Molecular mass:
    28127 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NXPH3 Gene

Post-translational modifications for NXPH3 Gene

  • May be proteolytically processed at the boundary between the N-terminal non-conserved and the central conserved domain in neuron-like cells.
  • Glycosylation at Asn 62, Asn 127, Asn 137, and Asn 143
  • Modification sites at PhosphoSitePlus

Other Protein References for NXPH3 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • R&D Systems Antibodies for NXPH3 (Neurexophilin-3)

No data available for DME Specific Peptides for NXPH3 Gene

Domains & Families for NXPH3 Gene

Protein Domains for NXPH3 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for NXPH3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95157

UniProtKB/Swiss-Prot:

NXPH3_HUMAN :
  • Belongs to the neurexophilin family.
Family:
  • Belongs to the neurexophilin family.
genes like me logo Genes that share domains with NXPH3: view

No data available for Gene Families for NXPH3 Gene

Function for NXPH3 Gene

Molecular function for NXPH3 Gene

UniProtKB/Swiss-Prot Function:
May be signaling molecules that resemble neuropeptides. Ligand for alpha-neurexins (By similarity).

Gene Ontology (GO) - Molecular Function for NXPH3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005102 receptor binding IBA --
genes like me logo Genes that share ontologies with NXPH3: view
genes like me logo Genes that share phenotypes with NXPH3: view

Animal Models for NXPH3 Gene

MGI Knock Outs for NXPH3:

Animal Model Products

  • Taconic Biosciences Mouse Models for NXPH3

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for NXPH3 Gene

Localization for NXPH3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NXPH3 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NXPH3 Gene COMPARTMENTS Subcellular localization image for NXPH3 gene
Compartment Confidence
extracellular 4
cytoskeleton 1
cytosol 1
endoplasmic reticulum 1
golgi apparatus 1
lysosome 1
mitochondrion 1
nucleus 1
plasma membrane 1
vacuole 1

Gene Ontology (GO) - Cellular Components for NXPH3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with NXPH3: view

Pathways & Interactions for NXPH3 Gene

SuperPathways for NXPH3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NXPH3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007218 neuropeptide signaling pathway NAS 9570794
genes like me logo Genes that share ontologies with NXPH3: view

No data available for Pathways by source and SIGNOR curated interactions for NXPH3 Gene

Transcripts for NXPH3 Gene

mRNA/cDNA for NXPH3 Gene

Unigene Clusters for NXPH3 Gene

Neurexophilin 3:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NXPH3 Gene

No ASD Table

Relevant External Links for NXPH3 Gene

GeneLoc Exon Structure for
NXPH3
ECgene alternative splicing isoforms for
NXPH3

Expression for NXPH3 Gene

mRNA expression in normal human tissues for NXPH3 Gene

mRNA differential expression in normal tissues according to GTEx for NXPH3 Gene

This gene is overexpressed in Artery - Aorta (x7.9), Artery - Tibial (x4.8), Brain - Cerebellar Hemisphere (x4.7), and Brain - Cerebellum (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of NXPH3 Gene:

NXPH3

SOURCE GeneReport for Unigene cluster for NXPH3 Gene:

Hs.55069

mRNA Expression by UniProt/SwissProt for NXPH3 Gene:

O95157-NXPH3_HUMAN
Tissue specificity: Highest level in brain.
genes like me logo Genes that share expression patterns with NXPH3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for NXPH3 Gene

Orthologs for NXPH3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NXPH3 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia NXPH3 34 35
  • 94.05 (n)
cow
(Bos Taurus)
Mammalia NXPH3 34 35
  • 91.53 (n)
rat
(Rattus norvegicus)
Mammalia Nxph3 34
  • 89.95 (n)
mouse
(Mus musculus)
Mammalia Nxph3 34 16 35
  • 89.55 (n)
oppossum
(Monodelphis domestica)
Mammalia NXPH3 35
  • 87 (a)
OneToOne
chicken
(Gallus gallus)
Aves NXPH3 34
  • 69.51 (n)
lizard
(Anolis carolinensis)
Reptilia NXPH3 35
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nxph3 34
  • 60.71 (n)
zebrafish
(Danio rerio)
Actinopterygii nxph2b 35
  • 45 (a)
ManyToMany
Species where no ortholog for NXPH3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NXPH3 Gene

ENSEMBL:
Gene Tree for NXPH3 (if available)
TreeFam:
Gene Tree for NXPH3 (if available)

Paralogs for NXPH3 Gene

Paralogs for NXPH3 Gene

(3) SIMAP similar genes for NXPH3 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with NXPH3: view

Variants for NXPH3 Gene

Sequence variations from dbSNP and Humsavar for NXPH3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111378743 -- 49,581,013(+) TCCGC(A/G)GGAGG utr-variant-3-prime
rs111605468 -- 49,578,896(+) TCGTC(A/G)CAGGG reference, missense
rs111740613 -- 49,573,950(+) CAGGC(C/T)CGGCC nc-transcript-variant, upstream-variant-2KB
rs111819184 -- 49,583,180(+) GATTG(C/T)AGAGA utr-variant-3-prime
rs112163568 -- 49,583,190(+) ACACA(A/G)TGAAA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for NXPH3 Gene

Variant ID Type Subtype PubMed ID
nsv2078 CNV deletion 18451855

Variation tolerance for NXPH3 Gene

Residual Variation Intolerance Score: 33.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.65; 13.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NXPH3 Gene

Human Gene Mutation Database (HGMD)
NXPH3
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NXPH3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NXPH3 Gene

Disorders for NXPH3 Gene

Relevant External Links for NXPH3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NXPH3

No disorders were found for NXPH3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NXPH3 Gene

Publications for NXPH3 Gene

  1. Neurexophilins form a conserved family of neuropeptide-like glycoproteins. (PMID: 9570794) Missler M. … Suedhof T.C. (J. Neurosci. 1998) 2 3 4 64
  2. Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PMID: 15340161) Zhang Z. … Henzel W.J. (Protein Sci. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 64
  5. Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PMID: 10574461) Hirosawa M. … Ohara O. (DNA Res. 1999) 3 4 64

Products for NXPH3 Gene

Sources for NXPH3 Gene

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