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Aliases for NUTM2F Gene

Aliases for NUTM2F Gene

  • NUT Family Member 2F 2 3 5
  • Family With Sequence Similarity 22, Member F 2 3
  • FAM22F 3 4
  • Protein FAM22F 3
  • NUTMF 3

External Ids for NUTM2F Gene

Previous HGNC Symbols for NUTM2F Gene

  • FAM22F

Previous GeneCards Identifiers for NUTM2F Gene

  • GC09M097078

Summaries for NUTM2F Gene

GeneCards Summary for NUTM2F Gene

NUTM2F (NUT Family Member 2F) is a Protein Coding gene. An important paralog of this gene is NUTM2G.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUTM2F Gene

Genomics for NUTM2F Gene

Regulatory Elements for NUTM2F Gene

Enhancers for NUTM2F Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G094553 0.8 ENCODE 0.7 +1.5 1460 0.3 CTCF TFAP4 SAP130 ARID4B MAX CEBPG RAD21 YY1 TEAD3 FOSL1 LOC100132077 NUTM2F PIR43687
GH09G094532 0.7 ENCODE 0.3 +21.3 21332 1.1 HNRNPUL1 DRAP1 SAP130 CEBPG DMAP1 TEAD3 HOMEZ MIXL1 GATAD2A SOX5 FBP2 PIR43687 NUTM2F
GH09G094525 0.3 FANTOM5 0.3 +29.0 29028 0.0 FBP1 PIR43687 NUTM2F
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NUTM2F on UCSC Golden Path with GeneCards custom track

Promoters for NUTM2F Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000238127 47 801 PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF48 ZBTB7B KDM4B ZHX2 NFYC

Genomic Location for NUTM2F Gene

Chromosome:
9
Start:
94,318,196 bp from pter
End:
94,554,847 bp from pter
Size:
236,652 bases
Orientation:
Minus strand

Genomic View for NUTM2F Gene

Genes around NUTM2F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUTM2F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUTM2F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUTM2F Gene

Proteins for NUTM2F Gene

  • Protein details for NUTM2F Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1L443-NTM2F_HUMAN
    Recommended name:
    NUT family member 2F
    Protein Accession:
    A1L443
    Secondary Accessions:
    • B6ZDF0
    • Q5SR58
    • Q5SR59
    • Q9UFB1

    Protein attributes for NUTM2F Gene

    Size:
    756 amino acids
    Molecular mass:
    80770 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI13277.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI13278.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for NUTM2F Gene

Post-translational modifications for NUTM2F Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NUTM2F Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NUTM2F Gene

Domains & Families for NUTM2F Gene

Protein Domains for NUTM2F Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NUTM2F Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A1L443

UniProtKB/Swiss-Prot:

NTM2F_HUMAN :
  • Belongs to the NUT family.
Family:
  • Belongs to the NUT family.
genes like me logo Genes that share domains with NUTM2F: view

No data available for Gene Families for NUTM2F Gene

Function for NUTM2F Gene

Phenotypes for NUTM2F Gene

GenomeRNAi human phenotypes for NUTM2F:
genes like me logo Genes that share phenotypes with NUTM2F: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NUTM2F Gene

Localization for NUTM2F Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NUTM2F gene
Compartment Confidence
nucleus 2
extracellular 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for NUTM2F Gene

Pathways & Interactions for NUTM2F Gene

SuperPathways for NUTM2F Gene

No Data Available

Interacting Proteins for NUTM2F Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000253262%0d%0a9606.ENSP00000353863%0d%0a
Selected Interacting proteins: A1L443-NTM2F_HUMAN ENSP00000253262 for NUTM2F Gene via IID STRING

Gene Ontology (GO) - Biological Process for NUTM2F Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NUTM2F Gene

Drugs & Compounds for NUTM2F Gene

No Compound Related Data Available

Transcripts for NUTM2F Gene

mRNA/cDNA for NUTM2F Gene

(1) REFSEQ mRNAs :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUTM2F Gene

No ASD Table

Relevant External Links for NUTM2F Gene

GeneLoc Exon Structure for
NUTM2F
ECgene alternative splicing isoforms for
NUTM2F

Expression for NUTM2F Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NUTM2F Gene

mRNA differential expression in normal tissues according to GTEx for NUTM2F Gene

This gene is overexpressed in Testis (x34.5).

Protein differential expression in normal tissues from HIPED for NUTM2F Gene

This gene is overexpressed in Adipocyte (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NUTM2F Gene



Protein tissue co-expression partners for NUTM2F Gene

NURSA nuclear receptor signaling pathways regulating expression of NUTM2F Gene:

NUTM2F
genes like me logo Genes that share expression patterns with NUTM2F: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NUTM2F Gene

Orthologs for NUTM2F Gene

This gene was present in the common ancestor of chordates.

Orthologs for NUTM2F Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM22F 34
  • 98.83 (n)
-- 35
  • 97 (a)
ManyToMany
-- 35
  • 94 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 35
  • 49 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 44 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 39 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm806 35
  • 37 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 36 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 50 (a)
OneToMany
Species where no ortholog for NUTM2F was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NUTM2F Gene

ENSEMBL:
Gene Tree for NUTM2F (if available)
TreeFam:
Gene Tree for NUTM2F (if available)

Paralogs for NUTM2F Gene

Paralogs for NUTM2F Gene

(9) SIMAP similar genes for NUTM2F Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with NUTM2F: view

Variants for NUTM2F Gene

Sequence variations from dbSNP and Humsavar for NUTM2F Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000016172 -- 94,319,794(+) ACACC(C/T)GGAGG intron-variant
rs1000311776 -- 94,321,793(+) TGACC(C/T)AACTC intron-variant
rs1000414513 -- 94,327,228(+) CCTCC(A/T)GAGTA intron-variant
rs1000487877 -- 94,326,781(+) CTGGA(C/T)GGAAA intron-variant
rs1000825275 -- 94,325,287(+) GTGCC(C/T)CCGGG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for NUTM2F Gene

Variant ID Type Subtype PubMed ID
dgv1491e214 CNV gain 21293372
esv24951 CNV gain 19812545
esv2761545 CNV gain 21179565
esv3621113 CNV gain 21293372
esv3621119 CNV gain 21293372
nsv1046906 CNV gain 25217958
nsv482131 CNV gain 20164927
nsv968733 CNV duplication 23825009

Variation tolerance for NUTM2F Gene

Residual Variation Intolerance Score: 58.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.40; 90.89% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NUTM2F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUTM2F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUTM2F Gene

Disorders for NUTM2F Gene

Relevant External Links for NUTM2F

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NUTM2F

No disorders were found for NUTM2F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUTM2F Gene

Publications for NUTM2F Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  2. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for NUTM2F Gene

Sources for NUTM2F Gene

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