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Aliases for NUTM2D Gene

Aliases for NUTM2D Gene

  • NUT Family Member 2D 2 3
  • Family With Sequence Similarity 22, Member D 2 3
  • FAM22D 3 4
  • NUT Family Member 2A Pseudogene 3

External Ids for NUTM2D Gene

Previous Symbols for NUTM2D Gene

  • FAM22D

Summaries for NUTM2D Gene

GeneCards Summary for NUTM2D Gene

NUTM2D (NUT Family Member 2D) is a Protein Coding gene. An important paralog of this gene is NUTM2B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUTM2D Gene

Genomics for NUTM2D Gene

Genomic Location for NUTM2D Gene

Start:
87,357,668 bp from pter
End:
87,370,695 bp from pter
Size:
13,028 bases
Orientation:
Plus strand

Genomic View for NUTM2D Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NUTM2D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUTM2D Gene

No data available for Regulatory Elements for NUTM2D Gene

Proteins for NUTM2D Gene

  • Protein details for NUTM2D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VT03-NTM2D_HUMAN
    Recommended name:
    NUT family member 2D
    Protein Accession:
    Q5VT03
    Secondary Accessions:
    • A6NGV9

    Protein attributes for NUTM2D Gene

    Size:
    806 amino acids
    Molecular mass:
    86276 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NUTM2D Gene

Proteomics data for NUTM2D Gene at MOPED

Post-translational modifications for NUTM2D Gene

No Post-translational modifications

Other Protein References for NUTM2D Gene

No data available for DME Specific Peptides for NUTM2D Gene

Domains for NUTM2D Gene

Protein Domains for NUTM2D Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

NTM2D_HUMAN
Family:
  • Belongs to the NUT family.:
    • Q5VT03
genes like me logo Genes that share domains with NUTM2D: view

No data available for Gene Families for NUTM2D Gene

Function for NUTM2D Gene

miRNA for NUTM2D Gene

miRTarBase miRNAs that target NUTM2D

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for NUTM2D Gene

Localization for NUTM2D Gene

No data available for Gene Ontology (GO) - Cellular Components for NUTM2D Gene

Pathways for NUTM2D Gene

SuperPathways for NUTM2D Gene

No Data Available

Interacting Proteins for NUTM2D Gene

Gene Ontology (GO) - Biological Process for NUTM2D Gene

None

No data available for Pathways by source for NUTM2D Gene

Transcripts for NUTM2D Gene

mRNA/cDNA for NUTM2D Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUTM2D Gene

NUT family member 2D:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NUTM2D Gene

No ASD Table

Relevant External Links for NUTM2D Gene

GeneLoc Exon Structure for
NUTM2D
ECgene alternative splicing isoforms for
NUTM2D

Expression for NUTM2D Gene

mRNA expression in normal human tissues for NUTM2D Gene

SOURCE GeneReport for Unigene cluster for NUTM2D Gene Hs.701044

genes like me logo Genes that share expressions with NUTM2D: view

Orthologs for NUTM2D Gene

This gene was present in the common ancestor of chordates.

Orthologs for NUTM2D Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 37
  • 34 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 37
  • 36 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm806 37
  • 28 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 36 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 36 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 44 (a)
OneToMany
Species with no ortholog for NUTM2D:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NUTM2D Gene

ENSEMBL:
Gene Tree for NUTM2D (if available)
TreeFam:
Gene Tree for NUTM2D (if available)

Paralogs for NUTM2D Gene

Paralogs for NUTM2D Gene

Selected SIMAP similar genes for NUTM2D Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for NUTM2D Gene

genes like me logo Genes that share paralogs with NUTM2D: view

Variants for NUTM2D Gene

Sequence variations from dbSNP and Humsavar for NUTM2D Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs1628459 -- 87,367,146(-) CCAAC(A/G)CACTG intron-variant
rs3124964 -- 87,369,468(-) caaag(G/T)gccat nc-transcript-variant
rs3128237 -- 87,356,069(-) TGCTC(C/T)TCCAC upstream-variant-2KB
rs7068913 -- 87,361,577(+) GGGGG(A/G)AGGAG intron-variant
rs7906420 -- 87,369,622(+) AGTGT(A/G)TCACA nc-transcript-variant

Relevant External Links for NUTM2D Gene

HapMap Linkage Disequilibrium report
NUTM2D

No data available for Structural Variations from Database of Genomic Variants (DGV) for NUTM2D Gene

Disorders for NUTM2D Gene

No disorders were found for NUTM2D Gene.

No data available for UniProtKB/Swiss-Prot for NUTM2D Gene

Publications for NUTM2D Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4

Products for NUTM2D Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NUTM2D
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NUTM2D
    • Block miRNA regulation of NUTM2D using miScript Target Protectors

    Sources for NUTM2D Gene

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