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Aliases for NUTM2D Gene

Aliases for NUTM2D Gene

  • NUT Family Member 2D 2 3 5
  • Family With Sequence Similarity 22, Member D 2 3
  • FAM22D 3 4
  • NUT Family Member 2A Pseudogene 3

External Ids for NUTM2D Gene

Previous HGNC Symbols for NUTM2D Gene

  • FAM22D

Previous GeneCards Identifiers for NUTM2D Gene

  • GC10P089120
  • GC10P089124

Summaries for NUTM2D Gene

GeneCards Summary for NUTM2D Gene

NUTM2D (NUT Family Member 2D) is a Protein Coding gene. An important paralog of this gene is NUTM2A.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUTM2D Gene

Genomics for NUTM2D Gene

Regulatory Elements for NUTM2D Gene

Enhancers for NUTM2D Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F087341 1 ENCODE 12.3 -15.0 -14962 2.0 ATF1 CREB3L1 SIN3A ZNF2 ZNF121 GLIS2 ZNF143 SP3 YY2 REST NUTM2D NUTM2A NUTM2A-AS1 PIR41183
GH10F087024 1.1 Ensembl ENCODE 9.9 -331.9 -331903 1.9 BCOR HDAC1 LEF1 ETV1 JUN ZNF316 GATA3 ZFHX2 FOXK2 NCOR1 NUTM2D PAPSS2 GLUD1 ENSG00000271573 FAM25A
GH10F087142 1 Ensembl ENCODE 9.9 -215.0 -214982 1.0 HDGF PKNOX1 CHD4 ZNF384 BMI1 ZBTB40 ZNF316 ZNF157 EED ETV6 CFL1P1 NUTM2D NUTM2A FAM35A NUTM2A-AS1 RN7SL733P ENSG00000237280
GH10F087081 1.1 Ensembl ENCODE 6.8 -273.8 -273768 4.6 BMI1 RARA YY1 ZNF121 FOS ZNF362 JUNB REST TBX21 IKZF1 MMRN2 ADIRF SNCG FAM35A NUTM2A-AS1 OPN4 NUTM2D NUTM2A GC10M087058
GH10F088060 1.6 FANTOM5 Ensembl ENCODE 4.1 +708.6 708633 12.6 HDGF PKNOX1 WRNIP1 YBX1 YY1 JUNB TBX21 ZNF518A ZNF623 MAFF PTEN KLLN FAM35A MINPP1 NUTM2D MED6P1 GC10P088093
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NUTM2D on UCSC Golden Path with GeneCards custom track

Genomic Location for NUTM2D Gene

87,357,668 bp from pter
87,370,695 bp from pter
13,028 bases
Plus strand

Genomic View for NUTM2D Gene

Genes around NUTM2D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUTM2D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUTM2D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUTM2D Gene

Proteins for NUTM2D Gene

  • Protein details for NUTM2D Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    NUT family member 2D
    Protein Accession:
    Secondary Accessions:
    • A6NGV9

    Protein attributes for NUTM2D Gene

    806 amino acids
    Molecular mass:
    86276 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NUTM2D Gene

Post-translational modifications for NUTM2D Gene

No Post-translational modifications

Other Protein References for NUTM2D Gene

No data available for DME Specific Peptides for NUTM2D Gene

Domains & Families for NUTM2D Gene

Protein Domains for NUTM2D Gene


Suggested Antigen Peptide Sequences for NUTM2D Gene

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the NUT family.
  • Belongs to the NUT family.
genes like me logo Genes that share domains with NUTM2D: view

No data available for Gene Families for NUTM2D Gene

Function for NUTM2D Gene

Animal Model Products

miRNA for NUTM2D Gene

miRTarBase miRNAs that target NUTM2D

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NUTM2D Gene

Localization for NUTM2D Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NUTM2D gene
Compartment Confidence
plasma membrane 3
cytosol 2
mitochondrion 1
peroxisome 1
nucleus 1
endoplasmic reticulum 1
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for NUTM2D Gene

Pathways & Interactions for NUTM2D Gene

SuperPathways for NUTM2D Gene

No Data Available

Interacting Proteins for NUTM2D Gene

Gene Ontology (GO) - Biological Process for NUTM2D Gene


No data available for Pathways by source and SIGNOR curated interactions for NUTM2D Gene

Transcripts for NUTM2D Gene

mRNA/cDNA for NUTM2D Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUTM2D Gene

NUT family member 2D:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUTM2D Gene

No ASD Table

Relevant External Links for NUTM2D Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NUTM2D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NUTM2D Gene

NURSA nuclear receptor signaling pathways regulating expression of NUTM2D Gene:


SOURCE GeneReport for Unigene cluster for NUTM2D Gene:

genes like me logo Genes that share expression patterns with NUTM2D: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NUTM2D Gene

Orthologs for NUTM2D Gene

This gene was present in the common ancestor of chordates.

Orthologs for NUTM2D Gene

Organism Taxonomy Gene Similarity Type Details
(Canis familiaris)
Mammalia -- 35
  • 36 (a)
(Monodelphis domestica)
Mammalia -- 35
  • 36 (a)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 36 (a)
(Bos Taurus)
Mammalia -- 35
  • 34 (a)
(Mus musculus)
Mammalia Gm806 35
  • 28 (a)
(Anolis carolinensis)
Reptilia -- 35
  • 44 (a)
Species where no ortholog for NUTM2D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NUTM2D Gene

Gene Tree for NUTM2D (if available)
Gene Tree for NUTM2D (if available)

Paralogs for NUTM2D Gene

Paralogs for NUTM2D Gene

(7) SIMAP similar genes for NUTM2D Gene using alignment to 2 proteins: Pseudogenes for NUTM2D Gene

genes like me logo Genes that share paralogs with NUTM2D: view

Variants for NUTM2D Gene

Sequence variations from dbSNP and Humsavar for NUTM2D Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs111863868 -- 87,368,313(+) AGGAC(C/T)CGGCA nc-transcript-variant
rs113163687 -- 87,361,316(+) AGGTA(C/T)ATTTT intron-variant
rs139769515 -- 87,360,904(+) GGCCT(C/G)TGAGG nc-transcript-variant
rs146792941 -- 87,370,360(+) GTTTA(A/G)CCATT nc-transcript-variant
rs1628459 -- 87,367,146(-) CCAAC(A/G)CACTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NUTM2D Gene

Variant ID Type Subtype PubMed ID
dgv492n106 CNV duplication 24896259
dgv949n100 CNV gain 25217958
esv2759774 CNV gain+loss 17122850
esv2760108 CNV gain+loss 21179565
esv2764246 CNV gain+loss 21179565
esv27973 CNV gain+loss 19812545
esv3577605 CNV gain 25503493
esv3624105 CNV loss 21293372
esv3891880 CNV gain 25118596
nsv1128647 CNV duplication 24896259
nsv428236 CNV loss 18775914
nsv482148 CNV gain 20164927
nsv498736 CNV loss 21111241
nsv7207 OTHER inversion 18451855
nsv7483 CNV deletion 18451855
nsv948123 CNV duplication 23825009

Variation tolerance for NUTM2D Gene

Gene Damage Index Score: 12.99; 94.97% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NUTM2D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUTM2D Gene

Disorders for NUTM2D Gene

Relevant External Links for NUTM2D

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NUTM2D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUTM2D Gene

Publications for NUTM2D Gene

  1. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4 64

Products for NUTM2D Gene

Sources for NUTM2D Gene

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