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Aliases for NUTM2B Gene

Aliases for NUTM2B Gene

  • NUT Family Member 2B 2 3
  • Family With Sequence Similarity 22, Member B 2 3
  • FAM22B 3 4
  • Protein FAM22B 3
  • BA119F19.1 3

External Ids for NUTM2B Gene

Previous Symbols for NUTM2B Gene

  • FAM22B

Summaries for NUTM2B Gene

GeneCards Summary for NUTM2B Gene

NUTM2B (NUT Family Member 2B) is a Protein Coding gene. An important paralog of this gene is NUTM2G.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUTM2B Gene

Genomics for NUTM2B Gene

Genomic Location for NUTM2B Gene

Start:
79,700,464 bp from pter
End:
79,714,681 bp from pter
Size:
14,218 bases
Orientation:
Plus strand

Genomic View for NUTM2B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NUTM2B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUTM2B Gene

No data available for Regulatory Elements for NUTM2B Gene

Proteins for NUTM2B Gene

  • Protein details for NUTM2B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NNL0-NTM2B_HUMAN
    Recommended name:
    NUT family member 2B
    Protein Accession:
    A6NNL0
    Secondary Accessions:
    • A6NM73

    Protein attributes for NUTM2B Gene

    Size:
    878 amino acids
    Molecular mass:
    93984 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAQ08562.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAQ08563.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for NUTM2B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NUTM2B Gene

Proteomics data for NUTM2B Gene at MOPED

Post-translational modifications for NUTM2B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NUTM2B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NUTM2B Gene

Domains for NUTM2B Gene

Protein Domains for NUTM2B Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

NTM2B_HUMAN
Family:
  • Belongs to the NUT family.:
    • A6NNL0
genes like me logo Genes that share domains with NUTM2B: view

No data available for Gene Families for NUTM2B Gene

Function for NUTM2B Gene

miRNA for NUTM2B Gene

miRTarBase miRNAs that target NUTM2B

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for NUTM2B Gene

Localization for NUTM2B Gene

No data available for Gene Ontology (GO) - Cellular Components for NUTM2B Gene

Pathways for NUTM2B Gene

SuperPathways for NUTM2B Gene

No Data Available

Interacting Proteins for NUTM2B Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000394623%0d%0a9606.ENSP00000244769%0d%0a
Selected Interacting proteins: ENSP00000394623 for NUTM2B Gene via STRING

Symbol External ID(s) Details
ATXN1

Gene Ontology (GO) - Biological Process for NUTM2B Gene

None

No data available for Pathways by source for NUTM2B Gene

Transcripts for NUTM2B Gene

mRNA/cDNA for NUTM2B Gene

(2) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NUTM2B Gene

No ASD Table

Relevant External Links for NUTM2B Gene

GeneLoc Exon Structure for
NUTM2B
ECgene alternative splicing isoforms for
NUTM2B

Expression for NUTM2B Gene

mRNA expression in normal human tissues for NUTM2B Gene

genes like me logo Genes that share expressions with NUTM2B: view

Orthologs for NUTM2B Gene

This gene was present in the common ancestor of chordates.

Orthologs for NUTM2B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 98 (a)
ManyToMany
-- 37
  • 97 (a)
ManyToMany
LOC738010 36
  • 98.79 (n)
  • 97.72 (a)
cow
(Bos Taurus)
Mammalia -- 37
  • 46 (a)
OneToMany
NUTM2D 36
  • 70.33 (n)
  • 55.06 (a)
dog
(Canis familiaris)
Mammalia -- 37
  • 50 (a)
OneToMany
NUTM2G 36
  • 67.74 (n)
  • 53.85 (a)
mouse
(Mus musculus)
Mammalia Gm806 36
  • 58.5 (n)
  • 41.88 (a)
Gm806 37
  • 39 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 39 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 36 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Nutm2f 36
  • 58.45 (n)
  • 42.44 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 48 (a)
OneToMany
Species with no ortholog for NUTM2B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NUTM2B Gene

ENSEMBL:
Gene Tree for NUTM2B (if available)
TreeFam:
Gene Tree for NUTM2B (if available)

Paralogs for NUTM2B Gene

Paralogs for NUTM2B Gene

Selected SIMAP similar genes for NUTM2B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NUTM2B: view

Variants for NUTM2B Gene

Relevant External Links for NUTM2B Gene

HapMap Linkage Disequilibrium report
NUTM2B

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for NUTM2B Gene

Disorders for NUTM2B Gene

No disorders were found for NUTM2B Gene.

No data available for UniProtKB/Swiss-Prot for NUTM2B Gene

Publications for NUTM2B Gene

  1. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PMID: 16713569) Lim J. … Zoghbi H.Y. (Cell 2006) 3
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4

Products for NUTM2B Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NUTM2B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NUTM2B
    • Block miRNA regulation of NUTM2B using miScript Target Protectors

    Sources for NUTM2B Gene

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