Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NUTM2A-AS1 Gene

Subcategory (RNA class) for NUTM2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NUTM2A-AS1 Gene

  • NUTM2A Antisense RNA 1 2 3 5
  • FAM22A Antisense RNA 1 2 3
  • FAM22A-AS1 3

External Ids for NUTM2A-AS1 Gene

Previous HGNC Symbols for NUTM2A-AS1 Gene

  • FAM22A-AS1

Previous GeneCards Identifiers for NUTM2A-AS1 Gene

  • GC10M088970

Summaries for NUTM2A-AS1 Gene

GeneCards Summary for NUTM2A-AS1 Gene

NUTM2A-AS1 (NUTM2A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUTM2A-AS1 Gene

Genomics for NUTM2A-AS1 Gene

Regulatory Elements for NUTM2A-AS1 Gene

Enhancers for NUTM2A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G087091 1.4 ENCODE dbSUPER 36.3 +248.7 248717 6.2 MLX CREB3L1 AGO1 ZFP64 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC NUTM2A-AS1 ENSG00000272631 FAM35A BMPR1A CFL1P1 RPL11P3 ENSG00000227896 FAM25A BMS1P3 ADIRF-AS1
GH10G087860 1.4 ENCODE dbSUPER 28.7 -522.1 -522125 9.0 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 NUTM2A-AS1 FAM35A RPL11P3 ADIRF-AS1 PTEN LIPJ KLLN ENSG00000224745
GH10G087840 1.6 FANTOM5 Ensembl ENCODE 19 -501.3 -501290 6.8 FOXA2 ARNT FEZF1 ZNF2 YY1 FOS ZNF263 SP3 JUNB ZNF610 FAM35A NUTM2A-AS1 RPL11P3 FAM25A ENSG00000261011 ENSG00000224745 LIPJ GC10P087843 GC10P087845
GH10G088027 1.3 Ensembl ENCODE dbSUPER 19.9 -685.7 -685666 2.2 MAX RAD21 YY1 NCOR1 CBX5 EED ZNF239 HNF4G ZNF600 IKZF2 NUTM2A-AS1 RPL11P3 FAM35A GLUD1 FAS PTEN LOC105378414 GC10M087988
GH10G086953 1.9 FANTOM5 Ensembl ENCODE dbSUPER 6.3 +385.2 385151 8.0 PKNOX1 CREB3L1 ARID4B SIN3A ZNF2 ZNF143 FOS KLF13 ZNF263 SP3 ENSG00000227896 SNCG LINC00863 NUTM2A-AS1 ADIRF-AS1 GC10P086949
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NUTM2A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NUTM2A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000031058 112 3001 ATF1 CREB3L1 SIN3A ZNF2 ZNF121 GLIS2 ZNF143 SP3 YY2 REST

Genomic Location for NUTM2A-AS1 Gene

Chromosome:
10
Start:
87,203,875 bp from pter
End:
87,342,612 bp from pter
Size:
138,738 bases
Orientation:
Minus strand

Genomic View for NUTM2A-AS1 Gene

Genes around NUTM2A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUTM2A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUTM2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUTM2A-AS1 Gene

Proteins for NUTM2A-AS1 Gene

Post-translational modifications for NUTM2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NUTM2A-AS1 Gene

Domains & Families for NUTM2A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NUTM2A-AS1 Gene

Function for NUTM2A-AS1 Gene

Phenotypes for NUTM2A-AS1 Gene

GenomeRNAi human phenotypes for NUTM2A-AS1:
genes like me logo Genes that share phenotypes with NUTM2A-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NUTM2A-AS1 Gene

Localization for NUTM2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NUTM2A-AS1 Gene

Pathways & Interactions for NUTM2A-AS1 Gene

SuperPathways for NUTM2A-AS1 Gene

No Data Available

Interacting Proteins for NUTM2A-AS1 Gene

Gene Ontology (GO) - Biological Process for NUTM2A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NUTM2A-AS1 Gene

Drugs & Compounds for NUTM2A-AS1 Gene

No Compound Related Data Available

Transcripts for NUTM2A-AS1 Gene

mRNA/cDNA for NUTM2A-AS1 Gene

(5) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUTM2A-AS1 Gene

NUTM2A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NUTM2A-AS1 Gene

No ASD Table

Relevant External Links for NUTM2A-AS1 Gene

GeneLoc Exon Structure for
NUTM2A-AS1
ECgene alternative splicing isoforms for
NUTM2A-AS1

Expression for NUTM2A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NUTM2A-AS1 Gene

SOURCE GeneReport for Unigene cluster for NUTM2A-AS1 Gene:

Hs.647195
genes like me logo Genes that share expression patterns with NUTM2A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NUTM2A-AS1 Gene

Orthologs for NUTM2A-AS1 Gene

Evolution for NUTM2A-AS1 Gene

ENSEMBL:
Gene Tree for NUTM2A-AS1 (if available)
TreeFam:
Gene Tree for NUTM2A-AS1 (if available)

No data available for Orthologs for NUTM2A-AS1 Gene

Paralogs for NUTM2A-AS1 Gene

No data available for Paralogs for NUTM2A-AS1 Gene

Variants for NUTM2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for NUTM2A-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000053642 -- 87,292,219(+) CAGTA(G/T)GACCT intron-variant
rs1000109806 -- 87,265,175(+) ACTCT(C/T)GGGTA intron-variant
rs1000169058 -- 87,342,598(+) CGAGC(C/T)GCGGA nc-transcript-variant, upstream-variant-2KB
rs1000220098 -- 87,250,841(+) TAAAG(C/T)TTCAA intron-variant
rs1000230364 -- 87,299,400(+) TGGAA(C/T)GCTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NUTM2A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1281n54 CNV loss 21841781
dgv1282n54 CNV loss 21841781
dgv1283n54 CNV loss 21841781
dgv1284n54 CNV loss 21841781
dgv1285n54 CNV loss 21841781
dgv1286n54 CNV loss 21841781
dgv1288n54 CNV loss 21841781
dgv1289n54 CNV loss 21841781
dgv1290n54 CNV loss 21841781
dgv1328n54 CNV loss 21841781
dgv1329n54 CNV loss 21841781
dgv1330n54 CNV loss 21841781
dgv1331n54 CNV loss 21841781
dgv269e212 CNV loss 25503493
dgv949n100 CNV gain 25217958
esv1011149 CNV gain 20482838
esv2421531 CNV deletion 20811451
esv2759774 CNV gain+loss 17122850
esv2760108 CNV gain+loss 21179565
esv2764246 CNV gain+loss 21179565
esv27973 CNV gain+loss 19812545
esv3577594 CNV gain 25503493
esv3584620 CNV loss 24956385
esv3624105 CNV loss 21293372
esv3624106 CNV loss 21293372
esv3624107 CNV gain 21293372
esv3891867 CNV gain+loss 25118596
nsv1040871 CNV gain 25217958
nsv1075420 CNV duplication 25765185
nsv1141879 OTHER inversion 24896259
nsv1143512 CNV deletion 24896259
nsv1146817 CNV duplication 26484159
nsv1151178 CNV duplication 26484159
nsv1159756 CNV duplication 26073780
nsv1159757 CNV deletion 26073780
nsv428236 CNV loss 18775914
nsv442587 CNV loss 18776908
nsv442588 CNV gain+loss 18776908
nsv498736 CNV loss 21111241
nsv514576 CNV gain 21397061
nsv514580 CNV gain 21397061
nsv514581 CNV gain+loss 21397061
nsv551603 CNV loss 21841781
nsv551612 CNV loss 21841781
nsv551616 CNV loss 21841781
nsv551628 CNV loss 21841781
nsv551813 CNV loss 21841781
nsv551823 CNV loss 21841781
nsv7207 OTHER inversion 18451855
nsv7483 CNV deletion 18451855
nsv8703 CNV loss 18304495
nsv8704 CNV gain 18304495
nsv8715 CNV gain+loss 18304495
nsv8716 CNV gain 18304495
nsv8717 CNV loss 18304495
nsv948094 CNV duplication 23825009
nsv948122 CNV duplication 23825009
nsv948123 CNV duplication 23825009

Relevant External Links for NUTM2A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUTM2A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NUTM2A-AS1 Gene

Disorders for NUTM2A-AS1 Gene

Relevant External Links for NUTM2A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NUTM2A-AS1

No disorders were found for NUTM2A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUTM2A-AS1 Gene

Publications for NUTM2A-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for NUTM2A-AS1 Gene

Sources for NUTM2A-AS1 Gene

Content
Loading form....