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Aliases for NUTM2A-AS1 Gene

Subcategory (RNA class) for NUTM2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NUTM2A-AS1 Gene

  • NUTM2A Antisense RNA 1 2 3 5
  • FAM22A Antisense RNA 1 2 3
  • FAM22A-AS1 3

External Ids for NUTM2A-AS1 Gene

Previous HGNC Symbols for NUTM2A-AS1 Gene

  • FAM22A-AS1

Previous GeneCards Identifiers for NUTM2A-AS1 Gene

  • GC10M088970

Summaries for NUTM2A-AS1 Gene

GeneCards Summary for NUTM2A-AS1 Gene

NUTM2A-AS1 (NUTM2A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NUTM2A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUTM2A-AS1 Gene

Genomics for NUTM2A-AS1 Gene

GeneHancer (GH) Regulatory Elements for NUTM2A-AS1 Gene

Promoters and enhancers for NUTM2A-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I087341 Promoter/Enhancer 1.4 Ensembl ENCODE 566 +0.1 111 3 ATF1 SIN3A ZNF2 ZNF121 POLR2B GLIS2 ZNF213 ZNF143 ATF7 SP3 NUTM2A-AS1 GC10P087344 GC10P087345 LINC00863 WAPL NUTM2D NUTM2A
GH10I087090 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 36.6 +248.7 248716 6.2 MLX ZFP64 DMAP1 YY1 ZNF213 ZNF143 SP3 NFYC SSRP1 ZNF610 FAM35A GLUD1 NUTM2A-AS1 ENSG00000272631 WAPL BMPR1A CFL1P1 RPL11P3 ENSG00000227896 BMS1P3
GH10I087860 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 28.7 -522.1 -522125 9 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 PTEN KLLN NUTM2A-AS1 FAM35A RPL11P3 ADIRF-AS1 LIPJ ENSG00000224745
GH10I086752 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22.4 +586.5 586522 7.4 HDGF FOXA2 MLX ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 POLR2B ENSG00000272631 BMPR1A GC10M086750 WAPL NUTM2A-AS1 ENSG00000227896 FAM35A GLUD1
GH10I087840 Enhancer 1.5 FANTOM5 Ensembl ENCODE 21.8 -501.3 -501290 6.8 FOXA2 ARNT SIN3A FEZF1 ZNF2 ZNF213 FOS KLF13 SP3 JUNB GC10P087843 FAM35A NUTM2A-AS1 RPL11P3 NUTM2A ENSG00000261011 ENSG00000224745 LIPJ ATAD1 GC10P087845
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NUTM2A-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NUTM2A-AS1 Gene

Genomic Locations for NUTM2A-AS1 Gene
chr10:87,203,875-87,342,612
(GRCh38/hg38)
Size:
138,738 bases
Orientation:
Minus strand
chr10:88,963,632-89,102,369
(GRCh37/hg19)

Genomic View for NUTM2A-AS1 Gene

Genes around NUTM2A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUTM2A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUTM2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUTM2A-AS1 Gene

Proteins for NUTM2A-AS1 Gene

Post-translational modifications for NUTM2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NUTM2A-AS1 Gene

Domains & Families for NUTM2A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NUTM2A-AS1 Gene

Function for NUTM2A-AS1 Gene

Phenotypes From GWAS Catalog for NUTM2A-AS1 Gene

Phenotypes for NUTM2A-AS1 Gene

GenomeRNAi human phenotypes for NUTM2A-AS1:
genes like me logo Genes that share phenotypes with NUTM2A-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NUTM2A-AS1 Gene

Localization for NUTM2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NUTM2A-AS1 Gene

Pathways & Interactions for NUTM2A-AS1 Gene

SuperPathways for NUTM2A-AS1 Gene

No Data Available

Interacting Proteins for NUTM2A-AS1 Gene

Gene Ontology (GO) - Biological Process for NUTM2A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NUTM2A-AS1 Gene

Drugs & Compounds for NUTM2A-AS1 Gene

No Compound Related Data Available

Transcripts for NUTM2A-AS1 Gene

mRNA/cDNA for NUTM2A-AS1 Gene

(5) Additional mRNA sequences :
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUTM2A-AS1 Gene

NUTM2A antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NUTM2A-AS1 Gene

No ASD Table

Relevant External Links for NUTM2A-AS1 Gene

GeneLoc Exon Structure for
NUTM2A-AS1
ECgene alternative splicing isoforms for
NUTM2A-AS1

Expression for NUTM2A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NUTM2A-AS1 Gene

SOURCE GeneReport for Unigene cluster for NUTM2A-AS1 Gene:

Hs.647195
genes like me logo Genes that share expression patterns with NUTM2A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NUTM2A-AS1 Gene

Orthologs for NUTM2A-AS1 Gene

Evolution for NUTM2A-AS1 Gene

ENSEMBL:
Gene Tree for NUTM2A-AS1 (if available)
TreeFam:
Gene Tree for NUTM2A-AS1 (if available)

No data available for Orthologs for NUTM2A-AS1 Gene

Paralogs for NUTM2A-AS1 Gene

No data available for Paralogs for NUTM2A-AS1 Gene

Variants for NUTM2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for NUTM2A-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000053642 -- 87,292,219(-) T/G intron_variant
rs1000109806 -- 87,265,175(-) C/T intron_variant
rs1000169058 -- 87,342,598(-) C/T upstream_transcript_variant
rs1000220098 -- 87,250,841(-) C/T intron_variant
rs1000230364 -- 87,299,400(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NUTM2A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1281n54 CNV loss 21841781
dgv1282n54 CNV loss 21841781
dgv1283n54 CNV loss 21841781
dgv1284n54 CNV loss 21841781
dgv1285n54 CNV loss 21841781
dgv1286n54 CNV loss 21841781
dgv1288n54 CNV loss 21841781
dgv1289n54 CNV loss 21841781
dgv1290n54 CNV loss 21841781
dgv1328n54 CNV loss 21841781
dgv1329n54 CNV loss 21841781
dgv1330n54 CNV loss 21841781
dgv1331n54 CNV loss 21841781
dgv269e212 CNV loss 25503493
dgv949n100 CNV gain 25217958
esv1011149 CNV gain 20482838
esv2421531 CNV deletion 20811451
esv2759774 CNV gain+loss 17122850
esv2760108 CNV gain+loss 21179565
esv2764246 CNV gain+loss 21179565
esv27973 CNV gain+loss 19812545
esv3577594 CNV gain 25503493
esv3584620 CNV loss 24956385
esv3624105 CNV loss 21293372
esv3624106 CNV loss 21293372
esv3624107 CNV gain 21293372
esv3891867 CNV gain+loss 25118596
nsv1040871 CNV gain 25217958
nsv1075420 CNV duplication 25765185
nsv1141879 OTHER inversion 24896259
nsv1143512 CNV deletion 24896259
nsv1146817 CNV duplication 26484159
nsv1151178 CNV duplication 26484159
nsv1159756 CNV duplication 26073780
nsv1159757 CNV deletion 26073780
nsv428236 CNV loss 18775914
nsv442587 CNV loss 18776908
nsv442588 CNV gain+loss 18776908
nsv498736 CNV loss 21111241
nsv514576 CNV gain 21397061
nsv514580 CNV gain 21397061
nsv514581 CNV gain+loss 21397061
nsv551603 CNV loss 21841781
nsv551612 CNV loss 21841781
nsv551616 CNV loss 21841781
nsv551628 CNV loss 21841781
nsv551813 CNV loss 21841781
nsv551823 CNV loss 21841781
nsv7207 OTHER inversion 18451855
nsv7483 CNV deletion 18451855
nsv8703 CNV loss 18304495
nsv8704 CNV gain 18304495
nsv8715 CNV gain+loss 18304495
nsv8716 CNV gain 18304495
nsv8717 CNV loss 18304495
nsv948094 CNV duplication 23825009
nsv948122 CNV duplication 23825009
nsv948123 CNV duplication 23825009

Additional Variant Information for NUTM2A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUTM2A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NUTM2A-AS1 Gene

Disorders for NUTM2A-AS1 Gene

Additional Disease Information for NUTM2A-AS1

No disorders were found for NUTM2A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUTM2A-AS1 Gene

Publications for NUTM2A-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for NUTM2A-AS1 Gene

Sources for NUTM2A-AS1 Gene

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