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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

NUP98 Gene

protein-coding GIFtS: 64
GCID: GC11M003696

nucleoporin 98kDa

(Previous name: nucleoporin 98kD )

Explore 35 diseases affiliated with
NUP98 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Nucleoporin 98kDa¹ ²		Nup98-Nup96²
NUP96¹ ²		GLFG-Repeat Containing Nucleoporin²
Nucleoporin 98kD¹		Nuclear Pore Complex Protein Nup98-Nup96²
ADIR2²		ADAR2³
NUP196²

External Ids:	HGNC: 8068¹	Entrez Gene: 4928²	Ensembl: ENSG00000110713⁷	OMIM: 601021⁵	UniProtKB: P52948³

Export aliases for NUP98 gene to outside databases

Previous GC identifers: GC11M004267 GC11M003962 GC11M003655 GC11M003660 GC11M003652 GC11M003430

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for NUP98:

Signal-mediated nuclear import and export proceed through the nuclear pore complex (NPC), which is comprised of

approximately 50 unique proteins collectively known as nucleoporins. The 98 kDa nucleoporin is generated through a

biogenesis pathway that involves synthesis and proteolytic cleavage of a 186 kDa precursor protein. This cleavage

results in the 98 kDa nucleoporin as well as a 96 kDa nucleoporin, both of which are localized to the nucleoplasmic

side of the NPC. Rat studies show that the 98 kDa nucleoporin functions as one of several docking site nucleoporins of

transport substrates. The human gene has been shown to fuse to several genes following chromosome translocations in

acute myelogenous leukemia (AML) and T-cell acute lymphocytic leukemia (T-ALL). This gene is one of several genes

located in the imprinted gene domain of 11p15.5, an important tumor-suppressor gene region. Alterations in this region

have been associated with the Beckwith-Wiedemann syndrome, Wilms tumor, rhabdomyosarcoma, adrenocortical carcinoma,

and lung, ovarian, and breast cancer. Alternative splicing of this gene results in several transcript variants;

however, not all variants have been fully described. (provided by RefSeq, May 2010)

UniProtKB/Swiss-Prot: NUP98_HUMAN, P52948

Function: Nup98 and Nup96 play a role in the bidirectional transport across the nucleoporin complex (NPC). The FG

repeat domains in Nup98 have a direct role in the transport

Gene Wiki entry for NUP98

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000011.9 NC_018922.1 NT_009237.18

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the NUP98 gene promoter:
Nkx3-1 v2 Nkx3-1 MEF-2A Nkx3-1 v4 Tal-1 Egr-1 Nkx3-1 v3 Nkx3-1 v1 aMEF-2 Pax-4a
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: NUP98 promoter sequence

Search SABiosciences Chromatin IP Primers for NUP98

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NUP98

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p15.5 Ensembl cytogenetic band: 11p15.4 HGNC cytogenetic band: 11p15

NUP98 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NUP98 gene location

GeneLoc information about chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11M003696: view genomic region (about GC identifiers)

Start:	3,692,313 bp from pter	End:	3,819,022 bp from pter
Size:	126,710 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: NUP98_HUMAN, P52948 (See protein sequence)

Recommended Name: Nuclear pore complex protein Nup98-Nup96 precursor

Size: 1817 amino acids; 197579 Da

Subunit: Nup98 interacts directly with Nup96. Nup98 interacts directly with NUP88 and NUP214, subunits of the

cytoplasmic filaments of the nuclear pore complex (By similarity). Nup96 is part of the Nup160 subcomplex in the

nuclear pore which is composed of Nup160, Nup133, Nup107 and Nup96. This complex plays a role in RNA export and in

tethering Nup98 and Nup153 to the nucleus. Interacts with RAE1. Interacts with vesicular stomatitis virus protein M

Subcellular location: Nucleus, nuclear pore complex. Nucleus membrane; Peripheral membrane protein; Nucleoplasmic side.

Note=Nup96 is localized to the nucleoplasmic side of the nuclear pore complex, at or near the nucleoplasmic basket

Sequence caution: Sequence=AAD22395.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown

origin in the C-terminal part; Sequence=AAD22396.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence.

Sequence of unknown origin in the C-terminal part; Sequence=AAF19342.1; Type=Erroneous initiation; Note=Translation

N-terminally extended; Sequence=AAF19342.1; Type=Frameshift; Positions=1551;

4 PDB 3D structures from and Proteopedia for NUP98:

1KO6 (3D)

2Q5X (3D)

2Q5Y (3D)

3MMY (3D)

Secondary accessions: Q8IUT2 Q8WYB0 Q96E54 Q9H3Q4 Q9NT02 Q9UF57 Q9UHX0 Q9Y6J4 Q9Y6J5

Alternative splicing: 6 isoforms: P52948-1 P52948-2 P52948-3 P52948-4 P52948-5 P52948-6

Explore the universe of human proteins at neXtProt for NUP98: NX_P52948

Post-translational modifications:

Isoform 1 to isoform 4 are autoproteolytically cleaved to yield Nup98 and Nup96 or Nup98 only, respectively. Cleaved

Nup98 is necessary for the targeting of Nup98 to the nuclear pore and the interaction with Nup96¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P52948

NUP98 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (4 alternative transcripts):

NP_005378.4 NP_057404.2 NP_624357.1 NP_624358.2

ENSEMBL proteins:

ENSP00000432275 ENSP00000316032 ENSP00000347404 ENSP00000413146 ENSP00000433515

ENSP00000433226 ENSP00000380199 ENSP00000380202 ENSP00000436226 ENSP00000432142

ENSP00000380208 ENSP00000434698 ENSP00000352091

Reactome Protein details: P52948
Human Recombinant Protein Products for NUP98:

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	Novus Biologicals NUP98 Proteins Novus Biologicals NUP98 Lysates
	Browse Sino Biological Recombinant Proteins
	Browse ProSpec Recombinant Proteins
	Uscn Proteins for NUP98

Gene Ontology (GO): 5/11 cellular component terms (GO ID links to tree view) (see all 11): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000776	colocalizes with kinetochore	IDA	15146057
GO:0005634	nucleus	--	--
GO:0005635	nuclear envelope	TAS	--
GO:0005643	nuclear pore	NAS	10087256
GO:0005654	nucleoplasm	IEA	--

NUP98 for ontologies About GeneDecksing

NUP98 Antibody Products:

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Assay Products for NUP98:

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	GenScript Custom Assay Services for NUP98
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for NUP98

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

NUP98 for domains About GeneDecksing

2 InterPro domains/families:

IPR007230 Peptidase_S59

IPR021967 Nup96

Graphical View of Domain Structure for InterPro Entry P52948

ProtoNet protein and cluster: P52948

1 Blocks protein family: IPB007230 Nucleoporin autopeptidase

UniProtKB/Swiss-Prot: NUP98_HUMAN, P52948

Domain: Contains G-L-F-G repeats

Similarity: Belongs to the nucleoporin GLFG family

Similarity: Contains 1 peptidase S59 domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: NUP98_HUMAN, P52948

Function: Nup98 and Nup96 play a role in the bidirectional transport across the nucleoporin complex (NPC). The FG

repeat domains in Nup98 have a direct role in the transport

Genatlas biochemistry entry for NUP98:

nucleoporin,essential component of multiple RNA export pathway,unlikely involved in the nuclear import of protein,fused

with HOX9D in acute myeloid leukemia with translocation t(7;11) (p15;p15),and with DDX10 in de novo or therapy related

myeloid malignancies with HOXD13 in translocation t(2;11) (q35;p15) with inv11(p15-q22) and with PMX1 in translocation

t(1;11) (q23;p15),with RAP1GDS1 in t(4;11)(q21;p15) in T cell acute lymphocitic leukemia,fused with TOP1 in

t(11;20)(p15;q11) in therapy related myelodysplastic syndrome

Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005215	transporter activity	TAS	7736573
GO:0005515	protein binding	IPI	15146057
GO:0017056	structural constituent of nuclear pore	NAS	9348540
GO:0042277	peptide binding	IEA	--

NUP98 for ontologies About GeneDecksing

Phenotypes:
10 GenomeRNAi human phenotypes for NUP98:

Decreased influenza A H1N1 (A/	Decreased influenza A H1N1 (A/	Decreased influenza A virus in	Decreased influenza A/WSN/33 r
Decreased viability	Downregulation of NF-kappaB pa	Downregulation of NF-kappaB pa	Nuclear 40S maturation defects
Nuclear 60S biogenesis defects	Nucleoplasmic pre-40S maturati

6 MGI mutant phenotypes (inferred from 2 alleles) (MGI details for Nup98):

cellular	embryogenesis	growth/size	hematopoietic system	immune system
mortality/aging

NUP98 for phenotypes About GeneDecksing

Animal Models:
Mouse knock-outs for NUP98: Nup98^tm1Jvd Nup98^tm1Bmaf

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for NUP98

miRNA Products:		OriGene 3'-UTR Clone (see all 4): NUP98 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NUP98
		8/36 QIAGEN miScript miRNA Assays for microRNAs that regulate NUP98 (see all 36):
		hsa-miR-4291 hsa-miR-562 hsa-miR-607 hsa-let-7d hsa-miR-938 hsa-miR-16-1* hsa-miR-3653 hsa-miR-3916

		SwitchGear 3'UTR luciferase reporter plasmid: NUP98 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NUP98 (see all 7) OriGene shRNA RFP: NUP98 OriGene siRNA: NUP98
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Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NUP98 (see all 6) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NUP98 (see all 4) OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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		Sirion Biotech Customized stable knockdown cell line services for NUP98 Sirion Biotech Customized inducible knockdown cell line services for NUP98

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NUP98

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/15 super-pathways (see all 15) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Translocation of Influenza A virus nonstructural protein 1 (NS1A) into the nucleus

8/11 pathways (see all 11)
Translocation of Influenza A virus nonstructural protein 1 (NS1A) into the nucleus	1.00	Interactions of Vpr with host cellular proteins	0.70
Nuclear import of Rev protein	0.76	Glucose transport	0.57
Vpr-mediated nuclear import of PICs	0.76	Hexose transport	0.55
Regulation of Glucokinase by Glucokinase Regulatory Protein	0.75	ISG15 antiviral mechanism	0.49

M Phase

M Phase	1.00	Mitotic Anaphase	0.85
Mitotic M-M/G1 phases	0.88	Separation of Sister Chromatids	0.80
Mitotic Metaphase and Anaphase	0.85

Resolution of Sister Chromatid Cohesion

	Resolution of Sister Chromatid Cohesion	1.00			Mitotic Prometaphase	0.93
	Kinetochore assembly	0.96

Cytokine Signaling in Immune system

Cytokine Signaling in Immune system

1.00

Interferon Signaling

0.61

HIV Infection

HIV Infection

1.00

Host Interactions of HIV factors

0.64

Pathway sources
See GeneCards unified pathways
Show all pathways

1 Cell Signaling Technology (CST) Pathway for NUP98

Cytoskeletal Signaling

5/33 Reactome Pathways for NUP98 (see all 33)

	Mitotic Prometaphase
	Interactions of Rev with host cellular proteins
	Rev-mediated nuclear export of HIV-1 RNA
	Interferon Signaling
	Vpr-mediated nuclear import of PICs

2 Kegg Pathways (Kegg details for NUP98):

	RNA transport
	Influenza A

NUP98 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for NUP98

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/51 Interacting proteins for NUP98 (P52948^{2, 3} ENSP00000316032⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 51)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
NXF1	Q9UBU9²^,³, ENSP00000294172⁴	MINT-15768 I2D: score=4 STRING: ENSP00000294172
RAE1	P78406²^,³, ENSP00000360286⁴	MINT-7294477 I2D: score=3 STRING: ENSP00000360286
HNRNPUL1	Q9BUJ2²^,³, ENSP00000375863⁴	MINT-7294513 I2D: score=1 STRING: ENSP00000375863
APC	P25054³, ENSP00000257430⁴	I2D: score=3 STRING: ENSP00000257430
NUP88	Q99567³, ENSP00000225696⁴	I2D: score=3 STRING: ENSP00000225696

About this table

Gene Ontology (GO): 5/19 biological process terms (GO ID links to tree view) (see all 19): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000059	protein import into nucleus, docking	NAS	15229283
GO:0000087	M phase of mitotic cell cycle	TAS	--
GO:0000236	mitotic prometaphase	TAS	--
GO:0000278	mitotic cell cycle	TAS	--
GO:0005975	carbohydrate metabolic process	TAS	--

NUP98 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

NUP98 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for NUP98
3 Novoseek chemical compound relationships for NUP98 gene About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
deguelin	72.7	8	16174445 (4), 17650673 (4)
gtp	15.4	1	10875935 (1)
oligonucleotide	1.04	1	19696924 (1)

Search CenterWatch for drugs/clinical trials and news about NUP98

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for NUP98 gene (4 alternative transcripts):

NM_005387.5 NM_016320.4 NM_139131.3 NM_139132.3

Unigene Cluster for NUP98:

Nucleoporin 98kDa

Hs.524750 [show with all ESTs]

Unigene Representative Sequence: NM_016320

18/20 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 20):

ENST00000533346 ENST00000324932(uc001lyg.3 uc001lyh.3 uc001lyi.3)

ENST00000355260 ENST00000429801 ENST00000469881 ENST00000482690 ENST00000524563

ENST00000530345 ENST00000488828 ENST00000529063 ENST00000483285 ENST00000397004

ENST00000397007(uc001lyj.2 uc001lyk.2) ENST00000530516 ENST00000527104

ENST00000529379 ENST00000397013 ENST00000461047

miRNA Products:		OriGene 3'-UTR Clone (see all 4): NUP98 Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NUP98
		8/36 QIAGEN miScript miRNA Assays for microRNAs that regulate NUP98 (see all 36):
		hsa-miR-4291 hsa-miR-562 hsa-miR-607 hsa-let-7d hsa-miR-938 hsa-miR-16-1* hsa-miR-3653 hsa-miR-3916

		SwitchGear 3'UTR luciferase reporter plasmid: NUP98 3' UTR sequence

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		Sirion Biotech Custom design and validation of potent shRNA sequences against NUP98

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		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NUP98
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NUP98

Additional cDNA sequence:

AB040538.1 AF071076.1 AF071077.1 AF116074.1 AF231130.1 AK292882.1 AK301512.1 AL133601.1

AL137613.1 BC012906.1 BC041136.1 BT007349.1 U41815.1

24/27 DOTS entries (see all 27):

DT.117788 DT.95305850 DT.100745542 DT.91769481 DT.100801254 DT.95305846 DT.97809667 DT.100801237

DT.91769485 DT.92040153 DT.120744135 DT.120744288 DT.120744689 DT.86852639 DT.86853246 DT.91769490

DT.95318918 DT.100739046 DT.120744398 DT.75101527 DT.91769491 DT.91769492 DT.95182995 DT.91731843

24/347 AceView cDNA sequences (see all 347):

CA426208 BF056412 AI052679 BQ063272 NM_139131 AA505118 AA628304 CK724964

AL703833 CB159858 CA307636 CK904679 BM676505 AW574828 AW276430 CA418353

BU950167 CO247236 BM713887 CA313022 BQ017277 AI924128 BM023259 BM023551

GeneLoc Exon Structure

5/13 Alternative Splicing Database (ASD) splice patterns (SP) for NUP98 (see all 13) About this scheme

ExUns:	1a	·	1b	·	1c	^	2	^	3	^	4	^	5	^	6a	·	6b	^	7	^	8	^	9a	·	9b	^	10	^	11a	·	11b	·	11c	·	11d	·	11e	^	12a	·	12b	^	13	^	14	^	15	^	16a	·	16b	^
SP1:							-																												-		-
SP2:							-																														-
SP3:							-																												-		-
SP4:
SP5:

ExUns:	17a	·	17b	^	18	^	19	^	20	^	21a	·	21b	^	22a	·	22b	^	23	^	24a	·	24b	^	25	^	26	^	27a	·	27b	^	28	^	29a	·	29b	^	30a	·	30b	^	31	^	32a	·	32b	^	33a	·	33b	^
SP1:													-																																-				-
SP2:
SP3:
SP4:																							-																						-				-
SP5:

ExUns:	34a	·	34b	·	34c	·	34d
SP1:
SP2:
SP3:
SP4:
SP5:

ECgene alternative splicing isoforms for NUP98

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

NUP98 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AAGATAATGT

About this image
See NUP98 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NUP98

SOURCE GeneReport for Unigene cluster: Hs.524750
SABiosciences Custom PCR Arrays for NUP98

Primer Products:		OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NUP98 Browse OriGene validated miRNA SYBR primer pairs
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for NUP98 gene from 7/19 species (see all 19) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	NUP98¹	nucleoporin 98kDa	73.45(n) 77.58(a)		430616 XM_428171.3 XP_428171.3
lizard (Anolis carolinensis)	Reptilia	NUP98⁶	--	52(a)	1 ↔ 1	GL343900.1(24448-69540)
African clawed frog (Xenopus laevis)	Amphibia	Xl.2522²	Xenopus laevis transcribed sequence with weak similarity to protein pirT43443 (H.sapiens) T43443 hypothetical protein DKFZp434A2315.1 - human (fragment) less	75.6(n)		CA972248.1
zebrafish (Danio rerio)	Actinopterygii	zgc63593²	hypothetical protein MGC63593	76.59(n)		393658 BC058869.1
fruit fly (Drosophila melanogaster)	Insecta	CG10198³ Nup98¹	Nucleoporin 98¹	29(a)³ 46.34(n)¹ 38.31(a)¹		42816¹ NM_142930.2¹ NP_651187.2¹
thale cress (Arabidopsis thaliana)	eudicotyledons	SAR3¹	suppressor of auxin resistance 3	41.86(n) 30.68(a)		844407 NM_106716.3 NP_178183.2
rice (Oryza sativa)	Liliopsida	Os03g0172000¹	hypothetical protein	42.99(n) 32.56(a)		4331780 NM_001055651.1 NP_001049116.1

ENSEMBL Gene Tree for NUP98 (if available)
TreeFam Gene Tree for NUP98 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 11 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs138052155^1,2		--	3695787(+)	`AATAAG/TATCTG`	2	--	ds500¹		0	--	--	--	--
rs185167425^1,2		--	3695887(+)	`AATCTA/GATTTA`	2	--	ds500¹		0	--	--	--	--
rs6578411^1,2	C,F,A,H	--	3695972(+)	`ATTCTA/GTTGGG`	2	--	ds500¹		21		EA NA NS WA	2550
rs149081028^1,2		--	3696016(+)	`ATATGC/TACAGC`	2	--	ds500¹		0	--	--	--	--
rs189463410^1,2		--	3696066(+)	`TTTCCC/TCTTAT`	2	--	ds500¹		0	--	--	--	--
rs192460650^1,2		--	3696190(+)	`GCCACC/TATAAA`	2	--	ds500¹		0	--	--	--	--
rs143192527^1,2		--	3696311(+)	`TCTAGA/GTCATT`	2	--	ut3¹		0	--	--	--	--
rs148265174^1,2		--	3696405(+)	`GATAGA/CCCTAA`	2	--	ut3¹		0	--	--	--	--
rs35493115^1,2	C,F,H	--	3696458(+)	`TCAGCA/CGTGTA`	2	--	ut3¹		6		NS NA	604
rs74874842^1,2	C,F	--	3696482(+)	`NNNNGC/TCCCTA`	2	--	ut3¹		1		WA	118

HapMap Linkage Disequilibrium report for NUP98 (3692313 - 3819022 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 2 variations for NUP98
2 CNVs: 3833 75519

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

NUP98 for disorders About GeneDecksing

OMIM gene information: 601021 OMIM disorders: --

UniProtKB/Swiss-Prot: NUP98_HUMAN, P52948

Note=A chromosomal aberration involving NUP98 is found in a form of acute myeloid leukemia. Translocation

t(7;11)(p15;p15) with HOXA9. Translocation t(11;17)(p15;p13) with PHF23

Note=A chromosomal aberration involving NUP98 is found in childhood acute myeloid leukemia. Translocation

t(5;11)(q35;p15.5) with NSD1. Translocation t(8;11)(p11.2;p15) with WHSC1L1

Note=A chromosomal aberration involving NUP98 is found in a form of therapy-related myelodysplastic syndrome.

Translocation t(11;20)(p15;q11) with TOP1

Note=A chromosomal aberration involving NUP98 is found in a form of T-cell acute lymphoblastic leukemia

(T-ALL). Translocation t(3;11)(q12.2;p15.4) with LNP1

Note=A chromosomal aberration involving NUP98 is associated with pediatric acute myeloid leukemia (AML) with

intermediate characteristics between M2-M3 French-American-British (FAB) subtypes. Translocation t(9;11)(p22;p15) with

PSIP1/LEDGF. The chimeric transcript is an in-frame fusion of NUP98 exon 8 to PSIP1/LEDGF exon 4

20/35 diseases for NUP98 (see all 35): About MalaCards

acute lymphocytic leukemia beckwith-wiedemann syndrome lymphocytic leukemia leukemia

dna topoisomerase ii adrenocortical carcinoma acute monocytic leukemia myelomonocytic leukemia

monocytic leukemia non-hodgkin lymphoma wilms tumor megakaryoblastic leukemia

acute megakaryoblastic leukemia weaver syndrome myeloid leukemia chronic myelomonocytic leukemia

acute myelomonocytic leukemia breast cancer acute promyelocytic leukemia rhabdomyosarcoma

1 disease from the University of Copenhagen DISEASES database for NUP98:

Leukemia

10/16 Novoseek disease relationships for NUP98 gene (see all 16) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
leukemogenesis	84.7	13	20237156 (2), 15193442 (1), 19380029 (1), 20417862 (1) (see all 9)
myelodysplastic syndromes	72.1	10	17988990 (2), 11681408 (2), 10830185 (1), 10502319 (1) (see all 8)
aml childhood	72	5	15951287 (2), 11493482 (1), 15725483 (1), 12353270 (1)
aml adult	67.5	2	19665072 (1), 12619167 (1)
hematologic malignancies	65.1	12	16467868 (1), 19665070 (1), 17988990 (1), 12183408 (1) (see all 12)
leukemia	65.1	21	15390187 (2), 17233820 (2), 16105755 (2), 20233715 (2) (see all 17)
t-all	61.7	12	12810632 (3), 17233820 (2), 16467868 (1), 10477737 (1) (see all 5)
chromosomal aberrations	58.1	6	10565304 (1), 10700860 (1), 11850070 (1), 16419055 (1) (see all 6)
myeloid leukemia	54	3	18604245 (1), 15454493 (1), 16028218 (1)
hematopoietic malignancies	51.9	3	16467868 (2), 15951287 (1)

Human Genome Epidemiology (HuGE) Navigator: NUP98 (1 document)

Export disorders for NUP98 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for NUP98 gene, integrated from 9 sources (see all 208):
(articles sorted by number of sources associating them with NUP98)

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world of online information

Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. (PubMed id 11684705)^{1, 2, 9} Vasu S.... Forbes D.J. (2001)
Structural constraints on autoprocessing of the human nucleoporin Nup98. (PubMed id 18287282)^{1, 2, 9} Sun Y. and Guo H.C. (2008)
NUP98 is fused to the NSD3 gene in acute myeloid leukemia associated with t(8;11)(p11.2;p15). (PubMed id 11986249)^{1, 2, 9} Rosati R.... Mecucci C. (2002)
The inv(11)(p15q22) chromosome translocation of de novo and therapy-related myeloid malignancies results in fusion of the nucleoporin gene, NUP98, with the putative RNA helicase gene, DDX10. (PubMed id 9166830)^{1, 3, 9} Arai Y....Ohki M. (1997)
A novel gene, NSD1, is fused to NUP98 in the t(5;11)(q35;p15.5) in de novo childhood acute myeloid leukemia. (PubMed id 11493482)^{1, 2, 9} Jaju R.J....Wainscoat J.S. (2001)
The t(11;20)(p15;q11) chromosomal translocation associated with therapy-related myelodysplastic syndrome results in an NUP98-TOP1 fusion. (PubMed id 10556215)^{1, 2, 9} Ahuja H.G.... Aplan P.D. (1999)
The t(7;11)(p15;p15) translocation in acute myeloid leukaemia fuses the genes for nucleoporin NUP98 and class I homeoprotein HOXA9. (PubMed id 8563754)^{1, 2, 9} Borrow J.... Housman D.E. (1996)
t(9;11)(p22;p15) with NUP98-LEDGF fusion gene in pediatric acute myeloid leukemia. (PubMed id 15725483)^{1, 2, 9} Morerio C.... Panarello C. (2005)
The three-dimensional structure of the autoproteolytic, nuclear pore- targeting domain of the human nucleoporin Nup98. (PubMed id 12191480)^{1, 2, 9} Hodel A.E....Powers M.A. (2002)
Structural and functional analysis of the interaction between the nucleoporin Nup98 and the mRNA export factor Rae1. (PubMed id 20498086)^{1, 2} Ren Y....Hoelz A. (2010)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 4928	HGNC: 8068	AceView: NUP98	Ensembl:ENSG00000110713	euGenes: HUgn4928
ECgene: NUP98	Kegg: 4928	H-InvDB: NUP98

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for NUP98	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for NUP98	Genetics and Cytogenetics in Oncology and Haematology

Intellectual Property for NUP98 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for NUP98 gene:
Search GeneIP for patents involving NUP98

GeneCards and IP:
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NUP98 Gene

nucleoporin 98kDa

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NUP98 Gene

nucleoporin 98kDa

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