Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NUP62CL Gene

Aliases for NUP62CL Gene

  • Nucleoporin 62kDa C-Terminal Like 2 3
  • NUP62L 4

External Ids for NUP62CL Gene

Previous GeneCards Identifiers for NUP62CL Gene

  • GC0XM106253
  • GC0XM106366
  • GC0XM095994

Summaries for NUP62CL Gene

Entrez Gene Summary for NUP62CL Gene

  • This gene encodes a protein containing a domain found in nucleoporins which are glycoproteins found in nuclear pore complexes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]

GeneCards Summary for NUP62CL Gene

NUP62CL (Nucleoporin 62kDa C-Terminal Like) is a Protein Coding gene. GO annotations related to this gene include structural constituent of nuclear pore. An important paralog of this gene is NUP62.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUP62CL Gene

Genomics for NUP62CL Gene

Regulatory Elements for NUP62CL Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for NUP62CL Gene

107,123,427 bp from pter
107,206,440 bp from pter
83,014 bases
Minus strand

Genomic View for NUP62CL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NUP62CL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUP62CL Gene

Proteins for NUP62CL Gene

  • Protein details for NUP62CL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Nucleoporin-62 C-terminal-like protein
    Protein Accession:
    Secondary Accessions:
    • D3DUX4
    • Q8WVL6
    • Q9NXP2

    Protein attributes for NUP62CL Gene

    184 amino acids
    Molecular mass:
    20837 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for NUP62CL Gene


neXtProt entry for NUP62CL Gene

Proteomics data for NUP62CL Gene at MOPED

Post-translational modifications for NUP62CL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NUP62CL Gene

No data available for DME Specific Peptides for NUP62CL Gene

Domains for NUP62CL Gene

Protein Domains for NUP62CL Gene


Suggested Antigen Peptide Sequences for NUP62CL Gene

Graphical View of Domain Structure for InterPro Entry



  • Q9H1M0
  • Belongs to the nucleoporin NSP1/NUP62 family.
genes like me logo Genes that share domains with NUP62CL: view

No data available for Gene Families for NUP62CL Gene

Function for NUP62CL Gene

Gene Ontology (GO) - Molecular Function for NUP62CL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0017056 structural constituent of nuclear pore IEA --
genes like me logo Genes that share ontologies with NUP62CL: view

Animal Model Products

CRISPR Products

miRNA for NUP62CL Gene

miRTarBase miRNAs that target NUP62CL

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NUP62CL

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for NUP62CL Gene

Localization for NUP62CL Gene

Subcellular locations from

Jensen Localization Image for NUP62CL Gene COMPARTMENTS Subcellular localization image for NUP62CL gene
Compartment Confidence
cytosol 3
mitochondrion 3
nucleus 2
extracellular 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for NUP62CL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005643 nuclear pore IEA --
genes like me logo Genes that share ontologies with NUP62CL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for NUP62CL Gene

Pathways for NUP62CL Gene

SuperPathways for NUP62CL Gene

No Data Available

Gene Ontology (GO) - Biological Process for NUP62CL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015031 protein transport IEA --
genes like me logo Genes that share ontologies with NUP62CL: view

No data available for Pathways by source for NUP62CL Gene

Transcripts for NUP62CL Gene

mRNA/cDNA for NUP62CL Gene

(20) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUP62CL Gene

Nucleoporin 62kDa C-terminal like:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NUP62CL

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUP62CL Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
SP2: - -

Relevant External Links for NUP62CL Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NUP62CL Gene

mRNA expression in normal human tissues for NUP62CL Gene

mRNA differential expression in normal tissues according to GTEx for NUP62CL Gene

This gene is overexpressed in Testis (7.8) and Adrenal Gland (4.5).

SOURCE GeneReport for Unigene cluster for NUP62CL Gene Hs.163629

genes like me logo Genes that share expressions with NUP62CL: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for NUP62CL Gene

Orthologs for NUP62CL Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for NUP62CL Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia NUP62CL 35
  • 99.28 (n)
  • 98.91 (a)
NUP62CL 36
  • 99 (a)
(Mus musculus)
Mammalia Nup62cl 16
Nup62cl 36
  • 30 (a)
(Canis familiaris)
Mammalia NUP62CL 36
  • 21 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 12 (a)
-- 36
  • 15 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 19 (a)
(Gallus gallus)
Aves -- 36
  • 19 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 16 (a)
(Danio rerio)
Actinopterygii nup62l 36
  • 18 (a)
fruit fly
(Drosophila melanogaster)
Insecta Nup62 36
  • 15 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NSP1 36
  • 2 (a)
NUP1 36
  • 1 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 18 (a)
Species with no ortholog for NUP62CL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NUP62CL Gene

Gene Tree for NUP62CL (if available)
Gene Tree for NUP62CL (if available)

Paralogs for NUP62CL Gene

Paralogs for NUP62CL Gene

Selected SIMAP similar genes for NUP62CL Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with NUP62CL: view

Variants for NUP62CL Gene

Sequence variations from dbSNP and Humsavar for NUP62CL Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs967194 -- 107,131,340(-) TCTCA(G/T)CAAAA intron-variant
rs970030 -- 107,143,757(+) ATAAC(A/G)ATTAT intron-variant
rs982835 -- 107,154,804(+) CAGCA(C/G)GGCTC intron-variant
rs1116288 -- 107,178,625(-) TAATA(A/G)GAGCA intron-variant
rs1285546 -- 107,130,202(-) TGTTT(C/G)ACCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NUP62CL Gene

Variant ID Type Subtype PubMed ID
esv2752312 CNV Gain 17911159
nsv519484 CNV Gain 19592680
esv2740376 CNV Deletion 23290073
nsv7027 CNV Insertion 18451855
esv1568973 CNV Insertion 17803354

Relevant External Links for NUP62CL Gene

HapMap Linkage Disequilibrium report
Locus Specific Mutation Databases (LSDB)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUP62CL Gene

Disorders for NUP62CL Gene

No disorders were found for NUP62CL Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for NUP62CL Gene

Publications for NUP62CL Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  5. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3

Products for NUP62CL Gene

Sources for NUP62CL Gene

Back to Top